Wall clock time and date at job start Tue Mar 31 2020 20:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47261 * 61.44452 * 3 2 1 5 5 C 1.37101 * 120.00324 * 264.22771 * 4 3 2 6 6 H 1.08000 * 120.00100 * 197.71999 * 5 4 3 7 7 C 1.38950 * 119.99556 * 17.72490 * 5 4 3 8 8 N 1.31409 * 120.00377 * 21.41870 * 7 5 4 9 9 Si 1.86797 * 119.99733 * 201.41610 * 7 5 4 10 10 H 1.48504 * 109.47321 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47393 * 120.00052 * 9 7 5 12 12 H 1.48505 * 109.47046 * 240.00136 * 9 7 5 13 13 C 1.34776 * 119.99768 * 84.23223 * 4 3 2 14 14 O 1.21296 * 119.99837 * 179.97438 * 13 4 3 15 15 C 1.50696 * 120.00313 * 359.97438 * 13 4 3 16 16 O 1.42899 * 109.47433 * 180.02562 * 15 13 4 17 17 C 1.35914 * 117.00079 * 179.97438 * 16 15 13 18 18 C 1.38729 * 120.04576 * 0.27432 * 17 16 15 19 19 C 1.38139 * 119.95340 * 180.25048 * 18 17 16 20 20 C 1.38346 * 120.04541 * 359.49631 * 19 18 17 21 21 Br 1.89101 * 119.95658 * 180.25368 * 20 19 18 22 22 C 1.38339 * 120.09046 * 0.22412 * 20 19 18 23 23 C 1.38140 * 120.04805 * 0.03045 * 22 20 19 24 24 H 1.09005 * 109.46891 * 301.44654 * 3 2 1 25 25 H 1.09003 * 109.47047 * 181.44601 * 3 2 1 26 26 H 0.96998 * 120.00437 * 179.97438 * 8 7 5 27 27 H 1.08999 * 109.47181 * 59.99640 * 15 13 4 28 28 H 1.09004 * 109.46853 * 300.00080 * 15 13 4 29 29 H 1.08001 * 120.02345 * 359.97438 * 18 17 16 30 30 H 1.08002 * 119.98215 * 179.76384 * 19 18 17 31 31 H 1.08008 * 119.97542 * 180.02562 * 22 20 19 32 32 H 1.08000 * 120.02287 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0967 -0.6593 -1.2131 5 6 3.4384 -1.9867 -1.1812 6 1 4.0549 -2.4045 -1.9633 7 6 2.9914 -2.7943 -0.1427 8 7 1.9376 -2.4404 0.5581 9 14 3.8884 -4.3833 0.2573 10 1 5.0340 -4.5525 -0.6724 11 1 4.3879 -4.3315 1.6547 12 1 2.9560 -5.5293 0.1070 13 6 3.2104 0.0384 -2.3606 14 8 3.6154 -0.5079 -3.3650 15 6 2.8344 1.4973 -2.3959 16 8 3.0403 2.0106 -3.7135 17 6 2.7465 3.3218 -3.9178 18 6 2.2753 4.0995 -2.8701 19 6 1.9723 5.4306 -3.0811 20 6 2.1485 5.9909 -4.3337 21 35 1.7398 7.8152 -4.6180 22 6 2.6238 5.2186 -5.3784 23 6 2.9230 3.8858 -5.1729 24 1 2.9716 -0.5353 0.8768 25 1 2.9709 1.0282 0.0259 26 1 1.6253 -3.0044 1.2829 27 1 3.4542 2.0494 -1.6894 28 1 1.7850 1.6087 -2.1228 29 1 2.1411 3.6633 -1.8912 30 1 1.6018 6.0355 -2.2667 31 1 2.7610 5.6581 -6.3554 32 1 3.2944 3.2833 -5.9887 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060859799.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:18 Heat of formation + Delta-G solvation = -15.246407 kcal Electronic energy + Delta-G solvation = -20176.593945 eV Core-core repulsion = 16763.231132 eV Total energy + Delta-G solvation = -3413.362813 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.46735 -40.40254 -38.47514 -37.56160 -36.20734 -33.88043 -32.85248 -32.20785 -30.41533 -29.33105 -28.80860 -26.37621 -23.94860 -23.00314 -21.14526 -19.86321 -19.49382 -18.30879 -17.88952 -17.23518 -17.07373 -16.72279 -16.35333 -15.86214 -15.44774 -15.22390 -14.86494 -14.71468 -14.51738 -14.09399 -13.86099 -13.69778 -13.44097 -13.15073 -12.95119 -12.72293 -12.57554 -12.38775 -12.17292 -12.06549 -12.04495 -11.31732 -11.22463 -11.18536 -10.52260 -10.13394 -9.99991 -9.18707 -8.45434 -6.01795 0.12194 0.23115 0.67565 1.34664 1.47375 1.57323 1.67855 1.82947 2.11339 2.20705 2.37661 2.56992 2.95117 3.11496 3.50741 3.63986 3.80308 3.84031 3.97307 4.12263 4.17674 4.33711 4.47912 4.54692 4.86973 4.89695 4.94128 5.17608 5.22934 5.46140 5.53965 5.91998 6.23821 6.38531 6.96071 7.05074 7.24728 7.79537 8.58421 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.032546 B = 0.002413 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.110903 B =11598.791546 C =12243.520501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C 0.253 3.747 3 C 0.216 3.784 4 N -0.445 5.445 5 C -0.342 4.342 6 H 0.083 0.917 7 C 0.011 3.989 8 N -0.888 5.888 9 Si 0.988 3.012 10 H -0.272 1.272 11 H -0.260 1.260 12 H -0.290 1.290 13 C 0.445 3.555 14 O -0.605 6.605 15 C 0.056 3.944 16 O -0.312 6.312 17 C 0.128 3.872 18 C -0.208 4.208 19 C -0.048 4.048 20 C -0.141 4.141 21 Br -0.047 7.047 22 C -0.048 4.048 23 C -0.158 4.158 24 H 0.131 0.869 25 H 0.146 0.854 26 H 0.277 0.723 27 H 0.129 0.871 28 H 0.091 0.909 29 H 0.155 0.845 30 H 0.156 0.844 31 H 0.159 0.841 32 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.482 21.085 -2.886 21.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.183 5.183 2 C -0.064 4.064 3 C 0.089 3.911 4 N -0.166 5.166 5 C -0.469 4.469 6 H 0.101 0.899 7 C -0.192 4.192 8 N -0.526 5.526 9 Si 0.812 3.188 10 H -0.196 1.196 11 H -0.184 1.184 12 H -0.216 1.216 13 C 0.234 3.766 14 O -0.489 6.489 15 C -0.022 4.022 16 O -0.224 6.224 17 C 0.082 3.918 18 C -0.227 4.227 19 C -0.068 4.068 20 C -0.221 4.221 21 Br 0.038 6.962 22 C -0.067 4.067 23 C -0.178 4.178 24 H 0.149 0.851 25 H 0.163 0.837 26 H 0.087 0.913 27 H 0.146 0.854 28 H 0.109 0.891 29 H 0.173 0.827 30 H 0.174 0.826 31 H 0.176 0.824 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.829 21.268 -3.452 21.562 hybrid contribution 0.458 -1.733 0.367 1.830 sum 1.287 19.535 -3.085 19.818 Atomic orbital electron populations 1.80939 1.14719 1.13009 1.09610 1.29745 0.95790 0.89287 0.91615 1.19231 0.80149 1.00430 0.91253 1.43706 1.56337 1.09665 1.06859 1.19654 1.31025 0.85090 1.11152 0.89926 1.25881 0.95045 1.01976 0.96341 1.69922 1.20004 1.40807 1.21888 0.84956 0.78061 0.76951 0.78822 1.19642 1.18446 1.21603 1.20428 0.83896 0.89066 0.83170 1.90562 1.51172 1.72524 1.34674 1.22584 1.03073 0.92423 0.84169 1.86170 1.81508 1.23027 1.31696 1.19555 0.94207 0.82688 0.95391 1.21534 1.06221 0.95098 0.99838 1.21150 0.95405 0.94172 0.96035 1.21809 1.10686 0.92266 0.97316 1.96688 1.93612 1.08800 1.97056 1.21102 0.94691 0.91747 0.99180 1.20640 1.05891 0.95591 0.95630 0.85146 0.83709 0.91277 0.85365 0.89071 0.82715 0.82638 0.82390 0.84013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -22.13 18.54 20.01 0.37 -21.76 16 2 C 0.25 10.05 12.95 89.44 1.16 11.21 16 3 C 0.22 7.35 4.91 84.58 0.42 7.76 16 4 N -0.44 -19.48 2.60 -645.42 -1.68 -21.15 16 5 C -0.34 -17.13 9.32 84.04 0.78 -16.35 16 6 H 0.08 4.54 7.39 -2.91 -0.02 4.52 16 7 C 0.01 0.49 4.87 84.93 0.41 0.91 16 8 N -0.89 -42.04 9.48 21.66 0.21 -41.84 16 9 Si 0.99 38.45 29.60 68.60 2.03 40.48 16 10 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 11 H -0.26 -9.35 7.11 99.48 0.71 -8.65 16 12 H -0.29 -11.61 7.11 99.48 0.71 -10.91 16 13 C 0.45 19.63 7.64 87.66 0.67 20.30 16 14 O -0.60 -32.87 16.15 15.96 0.26 -32.61 16 15 C 0.06 1.76 3.82 71.23 0.27 2.03 16 16 O -0.31 -10.81 9.67 -73.54 -0.71 -11.52 16 17 C 0.13 3.50 6.69 22.50 0.15 3.66 16 18 C -0.21 -4.55 9.04 22.36 0.20 -4.35 16 19 C -0.05 -0.92 9.78 22.27 0.22 -0.70 16 20 C -0.14 -2.78 6.22 22.32 0.14 -2.64 16 21 Br -0.05 -0.79 33.70 -20.37 -0.69 -1.48 16 22 C -0.05 -0.95 9.78 22.27 0.22 -0.73 16 23 C -0.16 -3.83 9.99 22.36 0.22 -3.61 16 24 H 0.13 4.58 6.46 -2.38 -0.02 4.56 16 25 H 0.15 3.10 6.68 -2.39 -0.02 3.08 16 26 H 0.28 12.61 8.31 -92.71 -0.77 11.84 16 27 H 0.13 2.84 6.92 -2.39 -0.02 2.83 16 28 H 0.09 2.69 7.04 -2.38 -0.02 2.67 16 29 H 0.16 2.76 6.30 -2.91 -0.02 2.74 16 30 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 31 H 0.16 2.37 8.06 -2.91 -0.02 2.34 16 32 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -67.75 309.34 5.83 -61.92 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: 1.18 Total: 10.47 kcal Atomic # 6 Polarization: 12.63 SS G_CDS: 4.86 Total: 17.49 kcal Atomic # 7 Polarization: -83.64 SS G_CDS: -1.10 Total: -84.75 kcal Atomic # 8 Polarization: -43.68 SS G_CDS: -0.45 Total: -44.13 kcal Atomic # 14 Polarization: 38.45 SS G_CDS: 2.03 Total: 40.48 kcal Atomic # 35 Polarization: -0.79 SS G_CDS: -0.69 Total: -1.48 kcal Total: -67.75 5.83 -61.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060859799.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.672 kcal (2) G-P(sol) polarization free energy of solvation -67.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds