Wall clock time and date at job start Tue Mar 31 2020 21:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00228 * 2 1 4 4 H 1.48503 * 109.46997 * 274.14083 * 3 2 1 5 5 H 1.48503 * 109.47192 * 34.13488 * 3 2 1 6 6 H 1.48494 * 109.47777 * 154.14200 * 3 2 1 7 7 C 1.38812 * 119.99902 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99940 * 342.68404 * 7 2 1 9 9 N 1.36936 * 120.00098 * 162.69338 * 7 2 1 10 10 C 1.46507 * 119.99781 * 317.66518 * 9 7 2 11 11 C 1.50696 * 109.47082 * 270.00201 * 10 9 7 12 12 O 1.21284 * 120.00168 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99867 * 179.97438 * 11 10 9 14 14 C 1.39960 * 120.00245 * 184.72261 * 13 11 10 15 15 C 1.38863 * 120.07248 * 22.95432 * 14 13 11 16 16 C 1.38113 * 119.93977 * 180.02562 * 15 14 13 17 17 C 1.38300 * 120.08681 * 0.02562 * 16 15 14 18 18 C 1.38264 * 120.14505 * 359.97438 * 17 16 15 19 19 C 1.38204 * 120.05978 * 0.02562 * 18 17 16 20 20 Br 1.89109 * 120.04041 * 180.02562 * 19 18 17 21 21 C 1.46493 * 120.00477 * 137.66941 * 9 7 2 22 22 C 1.53000 * 117.49991 * 12.99453 * 21 9 7 23 23 C 1.52997 * 117.49964 * 304.33620 * 21 9 7 24 24 H 0.97000 * 119.99793 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46627 * 149.99872 * 10 9 7 26 26 H 1.09003 * 109.46560 * 30.00595 * 10 9 7 27 27 H 0.97000 * 119.99964 * 4.71430 * 13 11 10 28 28 H 1.07999 * 120.02825 * 0.05185 * 15 14 13 29 29 H 1.07999 * 119.95280 * 180.28005 * 16 15 14 30 30 H 1.07990 * 119.92585 * 179.97438 * 17 16 15 31 31 H 1.08001 * 119.96293 * 180.02562 * 18 17 16 32 32 H 1.09006 * 115.55497 * 158.66349 * 21 9 7 33 33 H 1.09008 * 117.49384 * 359.97438 * 22 21 9 34 34 H 1.08998 * 117.50442 * 145.02091 * 22 21 9 35 35 H 1.09000 * 117.50243 * 214.97874 * 23 21 9 36 36 H 1.09008 * 117.49792 * 359.97317 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4102 2.0969 -1.3965 5 1 1.4941 2.6258 0.7857 6 1 3.5888 1.4165 0.6106 7 6 2.0102 -1.2022 0.0005 8 1 1.5069 -2.1161 0.2793 9 7 3.3331 -1.2292 -0.3522 10 6 3.8022 -0.4439 -1.4966 11 6 3.7111 -1.2772 -2.7489 12 8 3.2949 -2.4149 -2.6913 13 7 4.0913 -0.7578 -3.9331 14 6 3.9148 -1.4951 -5.1096 15 6 2.9603 -2.5023 -5.1631 16 6 2.7889 -3.2284 -6.3254 17 6 3.5668 -2.9540 -7.4354 18 6 4.5182 -1.9520 -7.3861 19 6 4.6948 -1.2216 -6.2262 20 35 5.9957 0.1493 -6.1596 21 6 4.2792 -2.0434 0.4145 22 6 3.6994 -3.0671 1.3926 23 6 4.3657 -1.7947 1.9217 24 1 -0.4850 0.8401 -0.0004 25 1 4.8379 -0.1461 -1.3328 26 1 3.1814 0.4454 -1.6059 27 1 4.4871 0.1270 -3.9700 28 1 2.3524 -2.7173 -4.2968 29 1 2.0435 -4.0088 -6.3686 30 1 3.4308 -3.5237 -8.3427 31 1 5.1237 -1.7399 -8.2549 32 1 5.1997 -2.3093 -0.1053 33 1 2.6139 -3.1345 1.4659 34 1 4.2385 -4.0063 1.5166 35 1 5.3429 -1.8972 2.3935 36 1 3.7189 -1.0248 2.3426 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063516122.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:44 Heat of formation + Delta-G solvation = 60.222970 kcal Electronic energy + Delta-G solvation = -21166.223970 eV Core-core repulsion = 17891.966849 eV Total energy + Delta-G solvation = -3274.257121 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.037 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.31559 -38.37344 -36.95945 -34.53516 -33.48838 -32.23149 -31.50823 -29.99329 -29.04397 -26.75637 -24.16021 -22.99376 -22.10645 -21.49633 -20.27554 -19.71711 -17.95456 -16.87733 -16.51434 -15.89374 -15.68850 -15.22363 -15.01442 -14.30050 -14.09183 -13.70725 -13.50636 -13.37379 -13.13997 -12.52357 -12.34987 -12.11676 -11.89228 -11.33140 -11.16788 -10.94090 -10.89643 -10.57846 -10.39029 -10.36015 -10.21991 -10.15464 -9.62610 -9.48722 -9.17804 -8.76844 -8.65591 -7.95890 -6.81045 -6.11562 -3.62763 1.09713 1.34814 1.54704 3.06564 3.11303 3.25165 3.34167 3.37906 3.77442 4.34194 4.65916 4.75840 4.83052 4.96580 5.11259 5.22085 5.33286 5.48282 5.53554 5.76309 5.78152 5.88181 5.91481 6.01261 6.10810 6.20066 6.23447 6.42944 6.44522 6.47099 6.59557 6.90896 7.03422 7.12582 7.59658 7.92529 8.33073 8.56533 8.83496 9.52823 9.90903 11.02330 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.014661 B = 0.004142 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.399412 B = 6757.677888 C = 7108.235130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.039 3.961 3 Si 0.869 3.131 4 H -0.284 1.284 5 H -0.295 1.295 6 H -0.260 1.260 7 C -0.265 4.265 8 H 0.085 0.915 9 N -0.545 5.545 10 C 0.120 3.880 11 C 0.485 3.515 12 O -0.488 6.488 13 N -0.683 5.683 14 C 0.196 3.804 15 C -0.133 4.133 16 C -0.081 4.081 17 C -0.148 4.148 18 C -0.072 4.072 19 C -0.139 4.139 20 Br -0.057 7.057 21 C 0.124 3.876 22 C -0.189 4.189 23 C -0.215 4.215 24 H 0.266 0.734 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.408 0.592 28 H 0.162 0.838 29 H 0.130 0.870 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.180 -0.313 -14.047 18.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.162 4.162 3 Si 0.698 3.302 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.184 1.184 7 C -0.394 4.394 8 H 0.102 0.898 9 N -0.261 5.261 10 C -0.011 4.011 11 C 0.272 3.728 12 O -0.359 6.359 13 N -0.329 5.329 14 C 0.096 3.904 15 C -0.154 4.154 16 C -0.100 4.100 17 C -0.168 4.168 18 C -0.092 4.092 19 C -0.221 4.221 20 Br 0.028 6.972 21 C 0.016 3.984 22 C -0.228 4.228 23 C -0.256 4.256 24 H 0.076 0.924 25 H 0.096 0.904 26 H 0.105 0.895 27 H 0.244 0.756 28 H 0.180 0.820 29 H 0.148 0.852 30 H 0.145 0.855 31 H 0.148 0.852 32 H 0.111 0.889 33 H 0.120 0.880 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 12.147 -0.486 -13.794 18.386 hybrid contribution 0.225 1.159 -0.196 1.197 sum 12.371 0.673 -13.990 18.688 Atomic orbital electron populations 1.69813 1.05917 1.26907 1.50565 1.25593 0.95193 0.97825 0.97638 0.87025 0.81217 0.84624 0.77308 1.21165 1.22198 1.18442 1.18726 0.83278 0.94114 1.43308 0.89757 1.43245 1.05787 1.52107 1.24981 1.21466 1.00174 0.94595 0.84841 1.23382 0.75757 0.89095 0.84614 1.90571 1.41579 1.18301 1.85478 1.44461 1.62888 1.20254 1.05313 1.17736 0.93290 0.93774 0.85588 1.21742 0.97593 0.95796 1.00221 1.21250 0.98171 0.98408 0.92142 1.21052 0.97659 0.99023 0.99112 1.20823 0.97958 0.94647 0.95748 1.21498 1.00790 1.01914 0.97884 1.96639 1.53284 1.48432 1.98871 1.21067 0.93486 0.97036 0.86850 1.23088 1.01558 0.92220 1.05890 1.23345 1.00777 1.00695 1.00763 0.92411 0.90354 0.89486 0.75571 0.82028 0.85234 0.85490 0.85179 0.88911 0.87962 0.90510 0.90651 0.88893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.38 13.97 55.49 0.78 -25.61 16 2 C 0.04 1.08 5.36 -17.43 -0.09 0.99 16 3 Si 0.87 20.51 24.96 -169.99 -4.24 16.27 16 4 H -0.28 -6.33 6.70 56.52 0.38 -5.96 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.26 -5.90 7.11 56.52 0.40 -5.50 16 7 C -0.27 -7.17 8.95 -15.06 -0.13 -7.30 16 8 H 0.08 2.53 6.75 -52.49 -0.35 2.18 16 9 N -0.55 -12.56 1.85 -167.02 -0.31 -12.87 16 10 C 0.12 2.42 4.98 -5.19 -0.03 2.40 16 11 C 0.49 9.59 7.73 -10.98 -0.08 9.51 16 12 O -0.49 -11.11 13.46 5.55 0.07 -11.03 16 13 N -0.68 -11.23 5.19 -9.84 -0.05 -11.28 16 14 C 0.20 3.12 6.46 -83.66 -0.54 2.58 16 15 C -0.13 -2.17 8.75 -39.40 -0.34 -2.52 16 16 C -0.08 -1.05 10.04 -39.60 -0.40 -1.45 16 17 C -0.15 -1.66 10.04 -39.55 -0.40 -2.05 16 18 C -0.07 -0.83 9.78 -39.58 -0.39 -1.22 16 19 C -0.14 -1.87 6.24 -39.34 -0.25 -2.12 16 20 Br -0.06 -0.67 32.28 -68.01 -2.20 -2.86 16 21 C 0.12 2.50 6.60 -67.94 -0.45 2.06 16 22 C -0.19 -3.67 9.86 -26.70 -0.26 -3.94 16 23 C -0.22 -4.05 10.19 -26.70 -0.27 -4.32 16 24 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.08 1.31 8.07 -51.93 -0.42 0.89 16 26 H 0.09 1.86 3.50 -51.93 -0.18 1.68 16 27 H 0.41 5.77 7.47 -40.82 -0.30 5.46 16 28 H 0.16 3.12 5.63 -52.49 -0.30 2.82 16 29 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 30 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 31 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.09 1.69 8.14 -51.93 -0.42 1.26 16 33 H 0.10 2.24 6.44 -51.92 -0.33 1.91 16 34 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.09 1.94 8.14 -51.92 -0.42 1.52 16 LS Contribution 320.50 15.07 4.83 4.83 Total: -1.00 -30.54 320.50 -8.76 -39.30 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -4.01 Total: 10.64 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -3.63 Total: -7.39 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: 0.41 Total: -49.76 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.07 Total: -11.03 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.24 Total: 16.27 kcal Atomic # 35 Polarization: -0.67 SS G_CDS: -2.20 Total: -2.86 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.54 -8.76 -39.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063516122.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.525 kcal (2) G-P(sol) polarization free energy of solvation -30.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds