Wall clock time and date at job start Tue Mar 31 2020 21:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00228 * 2 1 4 4 H 1.48503 * 109.46997 * 274.14083 * 3 2 1 5 5 H 1.48503 * 109.47192 * 34.13488 * 3 2 1 6 6 H 1.48494 * 109.47777 * 154.14200 * 3 2 1 7 7 C 1.38812 * 119.99902 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99940 * 342.68404 * 7 2 1 9 9 N 1.36936 * 120.00098 * 162.69338 * 7 2 1 10 10 C 1.46507 * 119.99781 * 317.66518 * 9 7 2 11 11 C 1.50696 * 109.47082 * 270.00201 * 10 9 7 12 12 O 1.21284 * 120.00168 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99867 * 179.97438 * 11 10 9 14 14 C 1.39960 * 120.00245 * 184.72261 * 13 11 10 15 15 C 1.38863 * 120.07248 * 22.95432 * 14 13 11 16 16 C 1.38113 * 119.93977 * 180.02562 * 15 14 13 17 17 C 1.38300 * 120.08681 * 0.02562 * 16 15 14 18 18 C 1.38264 * 120.14505 * 359.97438 * 17 16 15 19 19 C 1.38204 * 120.05978 * 0.02562 * 18 17 16 20 20 Br 1.89109 * 120.04041 * 180.02562 * 19 18 17 21 21 C 1.46493 * 120.00477 * 137.66941 * 9 7 2 22 22 C 1.53000 * 117.49991 * 12.99453 * 21 9 7 23 23 C 1.52997 * 117.49964 * 304.33620 * 21 9 7 24 24 H 0.97000 * 119.99793 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46627 * 149.99872 * 10 9 7 26 26 H 1.09003 * 109.46560 * 30.00595 * 10 9 7 27 27 H 0.97000 * 119.99964 * 4.71430 * 13 11 10 28 28 H 1.07999 * 120.02825 * 0.05185 * 15 14 13 29 29 H 1.07999 * 119.95280 * 180.28005 * 16 15 14 30 30 H 1.07990 * 119.92585 * 179.97438 * 17 16 15 31 31 H 1.08001 * 119.96293 * 180.02562 * 18 17 16 32 32 H 1.09006 * 115.55497 * 158.66349 * 21 9 7 33 33 H 1.09008 * 117.49384 * 359.97438 * 22 21 9 34 34 H 1.08998 * 117.50442 * 145.02091 * 22 21 9 35 35 H 1.09000 * 117.50243 * 214.97874 * 23 21 9 36 36 H 1.09008 * 117.49792 * 359.97317 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4102 2.0969 -1.3965 5 1 1.4941 2.6258 0.7857 6 1 3.5888 1.4165 0.6106 7 6 2.0102 -1.2022 0.0005 8 1 1.5069 -2.1161 0.2793 9 7 3.3331 -1.2292 -0.3522 10 6 3.8022 -0.4439 -1.4966 11 6 3.7111 -1.2772 -2.7489 12 8 3.2949 -2.4149 -2.6913 13 7 4.0913 -0.7578 -3.9331 14 6 3.9148 -1.4951 -5.1096 15 6 2.9603 -2.5023 -5.1631 16 6 2.7889 -3.2284 -6.3254 17 6 3.5668 -2.9540 -7.4354 18 6 4.5182 -1.9520 -7.3861 19 6 4.6948 -1.2216 -6.2262 20 35 5.9957 0.1493 -6.1596 21 6 4.2792 -2.0434 0.4145 22 6 3.6994 -3.0671 1.3926 23 6 4.3657 -1.7947 1.9217 24 1 -0.4850 0.8401 -0.0004 25 1 4.8379 -0.1461 -1.3328 26 1 3.1814 0.4454 -1.6059 27 1 4.4871 0.1270 -3.9700 28 1 2.3524 -2.7173 -4.2968 29 1 2.0435 -4.0088 -6.3686 30 1 3.4308 -3.5237 -8.3427 31 1 5.1237 -1.7399 -8.2549 32 1 5.1997 -2.3093 -0.1053 33 1 2.6139 -3.1345 1.4659 34 1 4.2385 -4.0063 1.5166 35 1 5.3429 -1.8972 2.3935 36 1 3.7189 -1.0248 2.3426 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063516122.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:44 Heat of formation + Delta-G solvation = 41.489566 kcal Electronic energy + Delta-G solvation = -21167.036311 eV Core-core repulsion = 17891.966849 eV Total energy + Delta-G solvation = -3275.069462 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.037 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.64092 -39.68743 -38.54838 -35.87406 -35.27759 -33.44819 -33.26498 -31.17477 -30.15310 -28.39195 -26.00143 -24.18992 -23.23945 -23.01888 -21.71369 -21.44398 -19.34714 -18.34291 -18.15591 -17.40890 -17.07226 -16.84406 -16.36641 -15.64828 -15.41866 -15.28999 -14.88933 -14.57147 -14.45012 -14.29499 -14.06952 -13.68494 -13.07749 -12.86546 -12.68661 -12.32342 -12.21618 -11.99297 -11.90513 -11.88939 -11.63476 -11.49963 -11.34620 -11.04055 -10.74591 -10.64144 -9.81064 -9.12346 -8.65883 -8.22606 -5.73469 0.03895 0.27243 0.53357 1.23814 1.39873 1.50727 1.66614 1.93001 2.36132 2.68930 2.95129 3.10291 3.33685 3.71394 3.84879 4.10221 4.23140 4.24633 4.30329 4.31454 4.37891 4.39705 4.44861 4.55844 4.85014 4.92305 4.96461 5.08046 5.22445 5.29115 5.39873 5.50832 5.54085 5.88386 5.90416 6.19925 6.31603 6.86759 7.14483 7.50605 7.90930 8.95514 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.014661 B = 0.004142 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.399412 B = 6757.677888 C = 7108.235130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.021 4.021 3 Si 0.938 3.062 4 H -0.261 1.261 5 H -0.305 1.305 6 H -0.238 1.238 7 C -0.252 4.252 8 H 0.032 0.968 9 N -0.559 5.559 10 C 0.114 3.886 11 C 0.487 3.513 12 O -0.529 6.529 13 N -0.671 5.671 14 C 0.167 3.833 15 C -0.162 4.162 16 C -0.084 4.084 17 C -0.132 4.132 18 C -0.067 4.067 19 C -0.141 4.141 20 Br -0.038 7.038 21 C 0.107 3.893 22 C -0.197 4.197 23 C -0.194 4.194 24 H 0.265 0.735 25 H 0.123 0.877 26 H 0.077 0.923 27 H 0.418 0.582 28 H 0.122 0.878 29 H 0.146 0.854 30 H 0.167 0.833 31 H 0.163 0.837 32 H 0.122 0.878 33 H 0.062 0.938 34 H 0.107 0.893 35 H 0.116 0.884 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.709 0.559 -16.376 22.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.218 4.218 3 Si 0.764 3.236 4 H -0.187 1.187 5 H -0.234 1.234 6 H -0.161 1.161 7 C -0.382 4.382 8 H 0.049 0.951 9 N -0.276 5.276 10 C -0.015 4.015 11 C 0.274 3.726 12 O -0.403 6.403 13 N -0.318 5.318 14 C 0.068 3.932 15 C -0.183 4.183 16 C -0.103 4.103 17 C -0.151 4.151 18 C -0.086 4.086 19 C -0.223 4.223 20 Br 0.047 6.953 21 C 0.000 4.000 22 C -0.235 4.235 23 C -0.234 4.234 24 H 0.074 0.926 25 H 0.141 0.859 26 H 0.095 0.905 27 H 0.257 0.743 28 H 0.140 0.860 29 H 0.164 0.836 30 H 0.185 0.815 31 H 0.180 0.820 32 H 0.140 0.860 33 H 0.081 0.919 34 H 0.125 0.875 35 H 0.134 0.866 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 15.735 0.393 -16.167 22.563 hybrid contribution -0.855 0.739 0.388 1.195 sum 14.880 1.132 -15.779 21.718 Atomic orbital electron populations 1.69979 1.08008 1.27726 1.53436 1.26296 0.95825 1.01822 0.97829 0.85918 0.80274 0.79020 0.78421 1.18721 1.23354 1.16126 1.18400 0.85140 0.92360 1.42337 0.95072 1.43272 1.04684 1.52970 1.26698 1.21575 1.02241 0.93595 0.84131 1.23081 0.75483 0.88487 0.85580 1.90579 1.43551 1.20015 1.86194 1.44078 1.62308 1.20646 1.04814 1.17833 0.94701 0.94518 0.86110 1.21547 0.98518 0.97798 1.00455 1.21489 0.98878 0.98236 0.91662 1.21491 0.95862 0.98319 0.99458 1.21299 0.97773 0.93691 0.95887 1.21676 1.00614 1.02482 0.97505 1.96655 1.52220 1.47530 1.98860 1.21407 0.93935 0.97025 0.87649 1.23045 0.99710 0.94159 1.06623 1.23318 1.01847 0.98867 0.99395 0.92619 0.85918 0.90510 0.74288 0.86036 0.83616 0.81538 0.81975 0.86012 0.91909 0.87493 0.86554 0.91433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.32 13.97 21.65 0.30 -59.01 16 2 C -0.02 -1.21 5.36 84.86 0.45 -0.76 16 3 Si 0.94 42.80 24.96 68.60 1.71 44.51 16 4 H -0.26 -10.83 6.70 99.48 0.67 -10.16 16 5 H -0.31 -14.38 7.11 99.48 0.71 -13.67 16 6 H -0.24 -9.93 7.11 99.48 0.71 -9.23 16 7 C -0.25 -14.36 8.95 84.03 0.75 -13.61 16 8 H 0.03 2.07 6.75 -2.91 -0.02 2.05 16 9 N -0.56 -25.96 1.85 -682.34 -1.26 -27.23 16 10 C 0.11 4.48 4.98 85.63 0.43 4.91 16 11 C 0.49 19.37 7.73 87.65 0.68 20.05 16 12 O -0.53 -25.15 13.46 -3.04 -0.04 -25.19 16 13 N -0.67 -21.65 5.19 -303.44 -1.57 -23.23 16 14 C 0.17 5.22 6.46 38.16 0.25 5.46 16 15 C -0.16 -5.44 8.75 22.39 0.20 -5.24 16 16 C -0.08 -2.08 10.04 22.25 0.22 -1.86 16 17 C -0.13 -2.46 10.04 22.29 0.22 -2.24 16 18 C -0.07 -1.29 9.78 22.27 0.22 -1.08 16 19 C -0.14 -3.46 6.24 22.43 0.14 -3.32 16 20 Br -0.04 -0.77 32.28 -20.37 -0.66 -1.43 16 21 C 0.11 4.22 6.60 44.99 0.30 4.51 16 22 C -0.20 -7.72 9.86 30.62 0.30 -7.42 16 23 C -0.19 -6.99 10.19 30.62 0.31 -6.68 16 24 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 25 H 0.12 3.68 8.07 -2.39 -0.02 3.67 16 26 H 0.08 3.18 3.50 -2.39 -0.01 3.17 16 27 H 0.42 11.14 7.47 -92.71 -0.69 10.45 16 28 H 0.12 5.08 5.63 -2.91 -0.02 5.07 16 29 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 30 H 0.17 1.84 8.06 -2.92 -0.02 1.81 16 31 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 32 H 0.12 4.09 8.14 -2.38 -0.02 4.07 16 33 H 0.06 2.96 6.44 -2.38 -0.02 2.95 16 34 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 35 H 0.12 3.25 8.14 -2.39 -0.02 3.23 16 36 H 0.07 2.79 8.14 -2.38 -0.02 2.77 16 Total: -1.00 -72.61 320.50 3.34 -69.27 By element: Atomic # 1 Polarization: 29.18 SS G_CDS: 0.39 Total: 29.57 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: 4.47 Total: -7.27 kcal Atomic # 7 Polarization: -106.93 SS G_CDS: -2.54 Total: -109.47 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.04 Total: -25.19 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 1.71 Total: 44.51 kcal Atomic # 35 Polarization: -0.77 SS G_CDS: -0.66 Total: -1.43 kcal Total: -72.61 3.34 -69.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063516122.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.760 kcal (2) G-P(sol) polarization free energy of solvation -72.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds