Wall clock time and date at job start Tue Mar 31 2020 21:07:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31617 * 1
3 3 Si 1.86796 * 120.00228 * 2 1
4 4 H 1.48503 * 109.46997 * 274.14083 * 3 2 1
5 5 H 1.48503 * 109.47192 * 34.13488 * 3 2 1
6 6 H 1.48494 * 109.47777 * 154.14200 * 3 2 1
7 7 C 1.38812 * 119.99902 * 179.97438 * 2 1 3
8 8 H 1.07997 * 119.99940 * 342.68404 * 7 2 1
9 9 N 1.36936 * 120.00098 * 162.69338 * 7 2 1
10 10 C 1.46507 * 119.99781 * 317.66518 * 9 7 2
11 11 C 1.50696 * 109.47082 * 270.00201 * 10 9 7
12 12 O 1.21284 * 120.00168 * 0.02562 * 11 10 9
13 13 N 1.34783 * 119.99867 * 179.97438 * 11 10 9
14 14 C 1.39960 * 120.00245 * 184.72261 * 13 11 10
15 15 C 1.38863 * 120.07248 * 22.95432 * 14 13 11
16 16 C 1.38113 * 119.93977 * 180.02562 * 15 14 13
17 17 C 1.38300 * 120.08681 * 0.02562 * 16 15 14
18 18 C 1.38264 * 120.14505 * 359.97438 * 17 16 15
19 19 C 1.38204 * 120.05978 * 0.02562 * 18 17 16
20 20 Br 1.89109 * 120.04041 * 180.02562 * 19 18 17
21 21 C 1.46493 * 120.00477 * 137.66941 * 9 7 2
22 22 C 1.53000 * 117.49991 * 12.99453 * 21 9 7
23 23 C 1.52997 * 117.49964 * 304.33620 * 21 9 7
24 24 H 0.97000 * 119.99793 * 0.02562 * 1 2 3
25 25 H 1.09003 * 109.46627 * 149.99872 * 10 9 7
26 26 H 1.09003 * 109.46560 * 30.00595 * 10 9 7
27 27 H 0.97000 * 119.99964 * 4.71430 * 13 11 10
28 28 H 1.07999 * 120.02825 * 0.05185 * 15 14 13
29 29 H 1.07999 * 119.95280 * 180.28005 * 16 15 14
30 30 H 1.07990 * 119.92585 * 179.97438 * 17 16 15
31 31 H 1.08001 * 119.96293 * 180.02562 * 18 17 16
32 32 H 1.09006 * 115.55497 * 158.66349 * 21 9 7
33 33 H 1.09008 * 117.49384 * 359.97438 * 22 21 9
34 34 H 1.08998 * 117.50442 * 145.02091 * 22 21 9
35 35 H 1.09000 * 117.50243 * 214.97874 * 23 21 9
36 36 H 1.09008 * 117.49792 * 359.97317 * 23 21 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.4102 2.0969 -1.3965
5 1 1.4941 2.6258 0.7857
6 1 3.5888 1.4165 0.6106
7 6 2.0102 -1.2022 0.0005
8 1 1.5069 -2.1161 0.2793
9 7 3.3331 -1.2292 -0.3522
10 6 3.8022 -0.4439 -1.4966
11 6 3.7111 -1.2772 -2.7489
12 8 3.2949 -2.4149 -2.6913
13 7 4.0913 -0.7578 -3.9331
14 6 3.9148 -1.4951 -5.1096
15 6 2.9603 -2.5023 -5.1631
16 6 2.7889 -3.2284 -6.3254
17 6 3.5668 -2.9540 -7.4354
18 6 4.5182 -1.9520 -7.3861
19 6 4.6948 -1.2216 -6.2262
20 35 5.9957 0.1493 -6.1596
21 6 4.2792 -2.0434 0.4145
22 6 3.6994 -3.0671 1.3926
23 6 4.3657 -1.7947 1.9217
24 1 -0.4850 0.8401 -0.0004
25 1 4.8379 -0.1461 -1.3328
26 1 3.1814 0.4454 -1.6059
27 1 4.4871 0.1270 -3.9700
28 1 2.3524 -2.7173 -4.2968
29 1 2.0435 -4.0088 -6.3686
30 1 3.4308 -3.5237 -8.3427
31 1 5.1237 -1.7399 -8.2549
32 1 5.1997 -2.3093 -0.1053
33 1 2.6139 -3.1345 1.4659
34 1 4.2385 -4.0063 1.5166
35 1 5.3429 -1.8972 2.3935
36 1 3.7189 -1.0248 2.3426
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000063516122.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:07:44
Heat of formation + Delta-G solvation = 41.489566 kcal
Electronic energy + Delta-G solvation = -21167.036311 eV
Core-core repulsion = 17891.966849 eV
Total energy + Delta-G solvation = -3275.069462 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 338.037 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-41.64092 -39.68743 -38.54838 -35.87406 -35.27759 -33.44819 -33.26498 -31.17477
-30.15310 -28.39195 -26.00143 -24.18992 -23.23945 -23.01888 -21.71369 -21.44398
-19.34714 -18.34291 -18.15591 -17.40890 -17.07226 -16.84406 -16.36641 -15.64828
-15.41866 -15.28999 -14.88933 -14.57147 -14.45012 -14.29499 -14.06952 -13.68494
-13.07749 -12.86546 -12.68661 -12.32342 -12.21618 -11.99297 -11.90513 -11.88939
-11.63476 -11.49963 -11.34620 -11.04055 -10.74591 -10.64144 -9.81064 -9.12346
-8.65883 -8.22606 -5.73469 0.03895 0.27243 0.53357 1.23814 1.39873
1.50727 1.66614 1.93001 2.36132 2.68930 2.95129 3.10291 3.33685
3.71394 3.84879 4.10221 4.23140 4.24633 4.30329 4.31454 4.37891
4.39705 4.44861 4.55844 4.85014 4.92305 4.96461 5.08046 5.22445
5.29115 5.39873 5.50832 5.54085 5.88386 5.90416 6.19925 6.31603
6.86759 7.14483 7.50605 7.90930 8.95514
Molecular weight = 338.04amu
Principal moments of inertia in cm(-1)
A = 0.014661 B = 0.004142 C = 0.003938
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1909.399412 B = 6757.677888 C = 7108.235130
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.949 5.949
2 C -0.021 4.021
3 Si 0.938 3.062
4 H -0.261 1.261
5 H -0.305 1.305
6 H -0.238 1.238
7 C -0.252 4.252
8 H 0.032 0.968
9 N -0.559 5.559
10 C 0.114 3.886
11 C 0.487 3.513
12 O -0.529 6.529
13 N -0.671 5.671
14 C 0.167 3.833
15 C -0.162 4.162
16 C -0.084 4.084
17 C -0.132 4.132
18 C -0.067 4.067
19 C -0.141 4.141
20 Br -0.038 7.038
21 C 0.107 3.893
22 C -0.197 4.197
23 C -0.194 4.194
24 H 0.265 0.735
25 H 0.123 0.877
26 H 0.077 0.923
27 H 0.418 0.582
28 H 0.122 0.878
29 H 0.146 0.854
30 H 0.167 0.833
31 H 0.163 0.837
32 H 0.122 0.878
33 H 0.062 0.938
34 H 0.107 0.893
35 H 0.116 0.884
36 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.709 0.559 -16.376 22.699
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.591 5.591
2 C -0.218 4.218
3 Si 0.764 3.236
4 H -0.187 1.187
5 H -0.234 1.234
6 H -0.161 1.161
7 C -0.382 4.382
8 H 0.049 0.951
9 N -0.276 5.276
10 C -0.015 4.015
11 C 0.274 3.726
12 O -0.403 6.403
13 N -0.318 5.318
14 C 0.068 3.932
15 C -0.183 4.183
16 C -0.103 4.103
17 C -0.151 4.151
18 C -0.086 4.086
19 C -0.223 4.223
20 Br 0.047 6.953
21 C 0.000 4.000
22 C -0.235 4.235
23 C -0.234 4.234
24 H 0.074 0.926
25 H 0.141 0.859
26 H 0.095 0.905
27 H 0.257 0.743
28 H 0.140 0.860
29 H 0.164 0.836
30 H 0.185 0.815
31 H 0.180 0.820
32 H 0.140 0.860
33 H 0.081 0.919
34 H 0.125 0.875
35 H 0.134 0.866
36 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges 15.735 0.393 -16.167 22.563
hybrid contribution -0.855 0.739 0.388 1.195
sum 14.880 1.132 -15.779 21.718
Atomic orbital electron populations
1.69979 1.08008 1.27726 1.53436 1.26296 0.95825 1.01822 0.97829
0.85918 0.80274 0.79020 0.78421 1.18721 1.23354 1.16126 1.18400
0.85140 0.92360 1.42337 0.95072 1.43272 1.04684 1.52970 1.26698
1.21575 1.02241 0.93595 0.84131 1.23081 0.75483 0.88487 0.85580
1.90579 1.43551 1.20015 1.86194 1.44078 1.62308 1.20646 1.04814
1.17833 0.94701 0.94518 0.86110 1.21547 0.98518 0.97798 1.00455
1.21489 0.98878 0.98236 0.91662 1.21491 0.95862 0.98319 0.99458
1.21299 0.97773 0.93691 0.95887 1.21676 1.00614 1.02482 0.97505
1.96655 1.52220 1.47530 1.98860 1.21407 0.93935 0.97025 0.87649
1.23045 0.99710 0.94159 1.06623 1.23318 1.01847 0.98867 0.99395
0.92619 0.85918 0.90510 0.74288 0.86036 0.83616 0.81538 0.81975
0.86012 0.91909 0.87493 0.86554 0.91433
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -59.32 13.97 21.65 0.30 -59.01 16
2 C -0.02 -1.21 5.36 84.86 0.45 -0.76 16
3 Si 0.94 42.80 24.96 68.60 1.71 44.51 16
4 H -0.26 -10.83 6.70 99.48 0.67 -10.16 16
5 H -0.31 -14.38 7.11 99.48 0.71 -13.67 16
6 H -0.24 -9.93 7.11 99.48 0.71 -9.23 16
7 C -0.25 -14.36 8.95 84.03 0.75 -13.61 16
8 H 0.03 2.07 6.75 -2.91 -0.02 2.05 16
9 N -0.56 -25.96 1.85 -682.34 -1.26 -27.23 16
10 C 0.11 4.48 4.98 85.63 0.43 4.91 16
11 C 0.49 19.37 7.73 87.65 0.68 20.05 16
12 O -0.53 -25.15 13.46 -3.04 -0.04 -25.19 16
13 N -0.67 -21.65 5.19 -303.44 -1.57 -23.23 16
14 C 0.17 5.22 6.46 38.16 0.25 5.46 16
15 C -0.16 -5.44 8.75 22.39 0.20 -5.24 16
16 C -0.08 -2.08 10.04 22.25 0.22 -1.86 16
17 C -0.13 -2.46 10.04 22.29 0.22 -2.24 16
18 C -0.07 -1.29 9.78 22.27 0.22 -1.08 16
19 C -0.14 -3.46 6.24 22.43 0.14 -3.32 16
20 Br -0.04 -0.77 32.28 -20.37 -0.66 -1.43 16
21 C 0.11 4.22 6.60 44.99 0.30 4.51 16
22 C -0.20 -7.72 9.86 30.62 0.30 -7.42 16
23 C -0.19 -6.99 10.19 30.62 0.31 -6.68 16
24 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16
25 H 0.12 3.68 8.07 -2.39 -0.02 3.67 16
26 H 0.08 3.18 3.50 -2.39 -0.01 3.17 16
27 H 0.42 11.14 7.47 -92.71 -0.69 10.45 16
28 H 0.12 5.08 5.63 -2.91 -0.02 5.07 16
29 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16
30 H 0.17 1.84 8.06 -2.92 -0.02 1.81 16
31 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16
32 H 0.12 4.09 8.14 -2.38 -0.02 4.07 16
33 H 0.06 2.96 6.44 -2.38 -0.02 2.95 16
34 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16
35 H 0.12 3.25 8.14 -2.39 -0.02 3.23 16
36 H 0.07 2.79 8.14 -2.38 -0.02 2.77 16
Total: -1.00 -72.61 320.50 3.34 -69.27
By element:
Atomic # 1 Polarization: 29.18 SS G_CDS: 0.39 Total: 29.57 kcal
Atomic # 6 Polarization: -11.73 SS G_CDS: 4.47 Total: -7.27 kcal
Atomic # 7 Polarization: -106.93 SS G_CDS: -2.54 Total: -109.47 kcal
Atomic # 8 Polarization: -25.15 SS G_CDS: -0.04 Total: -25.19 kcal
Atomic # 14 Polarization: 42.80 SS G_CDS: 1.71 Total: 44.51 kcal
Atomic # 35 Polarization: -0.77 SS G_CDS: -0.66 Total: -1.43 kcal
Total: -72.61 3.34 -69.27 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000063516122.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 110.760 kcal
(2) G-P(sol) polarization free energy of solvation -72.605 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.154 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.335 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.270 kcal
(6) G-S(sol) free energy of system = (1) + (5) 41.490 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.54 seconds