Wall clock time and date at job start Tue Mar 31 2020 21:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 119.99833 * 2 1 4 4 H 1.48500 * 109.46802 * 275.36821 * 3 2 1 5 5 H 1.48496 * 109.47332 * 35.36676 * 3 2 1 6 6 H 1.48502 * 109.47059 * 155.36813 * 3 2 1 7 7 C 1.38810 * 120.00277 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99655 * 339.27828 * 7 2 1 9 9 N 1.36933 * 120.00154 * 159.28093 * 7 2 1 10 10 C 1.46502 * 119.99569 * 324.15291 * 9 7 2 11 11 C 1.50699 * 109.47352 * 270.00255 * 10 9 7 12 12 O 1.21291 * 120.00129 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00035 * 180.02562 * 11 10 9 14 14 C 1.39955 * 119.99802 * 185.02013 * 13 11 10 15 15 C 1.38868 * 120.06142 * 211.97894 * 14 13 11 16 16 C 1.38105 * 119.94095 * 179.76556 * 15 14 13 17 17 C 1.38359 * 120.05876 * 0.49158 * 16 15 14 18 18 Br 1.89104 * 119.93898 * 179.74275 * 17 16 15 19 19 C 1.38353 * 120.12199 * 359.76199 * 17 16 15 20 20 C 1.38110 * 120.06383 * 0.02562 * 19 17 16 21 21 C 1.46501 * 120.00344 * 144.16146 * 9 7 2 22 22 C 1.52999 * 117.49925 * 4.53999 * 21 9 7 23 23 C 1.53001 * 117.49579 * 295.88078 * 21 9 7 24 24 H 0.96992 * 120.00555 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47386 * 30.00712 * 10 9 7 26 26 H 1.09002 * 109.46856 * 150.00377 * 10 9 7 27 27 H 0.96999 * 119.99969 * 5.02535 * 13 11 10 28 28 H 1.08005 * 120.02946 * 0.02562 * 15 14 13 29 29 H 1.08003 * 119.96969 * 180.21151 * 16 15 14 30 30 H 1.08010 * 119.96963 * 179.97438 * 19 17 16 31 31 H 1.07998 * 120.03264 * 179.97438 * 20 19 17 32 32 H 1.09001 * 115.54872 * 150.21604 * 21 9 7 33 33 H 1.09005 * 117.49594 * 0.02562 * 22 21 9 34 34 H 1.09000 * 117.50029 * 145.02081 * 22 21 9 35 35 H 1.08994 * 117.50242 * 214.97727 * 23 21 9 36 36 H 1.08999 * 117.49722 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3841 2.1119 -1.3940 5 1 1.5089 2.6173 0.8103 6 1 3.5998 1.4101 0.5835 7 6 2.0103 -1.2021 0.0005 8 1 1.5226 -2.1071 0.3319 9 7 3.3132 -1.2406 -0.4190 10 6 3.7536 -0.3812 -1.5207 11 6 3.5750 -1.1092 -2.8280 12 8 3.1238 -2.2350 -2.8386 13 7 3.9168 -0.5093 -3.9856 14 6 3.6541 -1.1423 -5.2059 15 6 4.5032 -0.9477 -6.2874 16 6 4.2444 -1.5774 -7.4890 17 6 3.1346 -2.3934 -7.6188 18 35 2.7794 -3.2482 -9.2678 19 6 2.2841 -2.5849 -6.5445 20 6 2.5405 -1.9612 -5.3393 21 6 4.2666 -2.1413 0.2337 22 6 3.7235 -3.0892 1.3048 23 6 4.5813 -1.8877 1.7094 24 1 -0.4850 0.8399 -0.0004 25 1 3.1588 0.5321 -1.5292 26 1 4.8054 -0.1285 -1.3862 27 1 4.3448 0.3610 -3.9729 28 1 5.3676 -0.3078 -6.1876 29 1 4.9063 -1.4291 -8.3294 30 1 1.4182 -3.2221 -6.6487 31 1 1.8760 -2.1107 -4.5011 32 1 5.0763 -2.5066 -0.3981 33 1 2.6566 -3.0430 1.5235 34 1 4.1760 -4.0781 1.3780 35 1 5.5978 -2.0867 2.0486 36 1 4.0793 -1.0506 2.1944 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063516447.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:48 Heat of formation + Delta-G solvation = 59.853481 kcal Electronic energy + Delta-G solvation = -20911.225638 eV Core-core repulsion = 17636.952495 eV Total energy + Delta-G solvation = -3274.273143 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.037 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -40.25132 -38.41770 -36.99932 -34.57025 -33.54803 -31.70166 -31.28885 -31.04204 -28.72611 -26.64941 -24.17295 -23.08060 -22.19225 -21.53962 -20.27452 -19.72342 -17.95932 -16.91941 -16.47734 -15.81256 -15.76243 -15.27129 -15.12923 -14.32007 -14.07085 -13.77576 -13.49239 -13.39905 -13.17522 -12.53574 -12.37914 -12.19409 -11.79104 -11.50895 -11.21934 -11.04510 -10.93204 -10.61547 -10.33344 -10.20201 -10.17575 -9.85579 -9.64075 -9.52983 -9.27873 -8.98673 -8.67093 -7.95655 -6.95247 -6.12662 -3.55187 1.07598 1.32072 1.62098 3.03499 3.07397 3.27672 3.32187 3.34987 3.74078 4.31966 4.61514 4.73833 4.78228 4.86749 5.10354 5.26116 5.29995 5.43389 5.59174 5.73145 5.74102 5.84423 5.92072 5.95427 5.99135 6.09025 6.25259 6.35738 6.37889 6.41938 6.52658 6.84684 7.01538 7.06361 7.60534 7.87583 8.27054 8.58931 8.81484 9.52465 9.87332 11.02078 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.020642 B = 0.002875 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.127451 B = 9735.375492 C =10070.292032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.035 3.965 3 Si 0.868 3.132 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.262 1.262 7 C -0.264 4.264 8 H 0.088 0.912 9 N -0.546 5.546 10 C 0.121 3.879 11 C 0.482 3.518 12 O -0.490 6.490 13 N -0.689 5.689 14 C 0.181 3.819 15 C -0.154 4.154 16 C -0.071 4.071 17 C -0.118 4.118 18 Br -0.065 7.065 19 C -0.068 4.068 20 C -0.119 4.119 21 C 0.123 3.877 22 C -0.185 4.185 23 C -0.219 4.219 24 H 0.265 0.735 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.407 0.593 28 H 0.132 0.868 29 H 0.131 0.869 30 H 0.133 0.867 31 H 0.149 0.851 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.249 -1.201 -15.815 18.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.166 4.166 3 Si 0.697 3.303 4 H -0.213 1.213 5 H -0.223 1.223 6 H -0.187 1.187 7 C -0.392 4.392 8 H 0.106 0.894 9 N -0.262 5.262 10 C -0.010 4.010 11 C 0.268 3.732 12 O -0.360 6.360 13 N -0.336 5.336 14 C 0.084 3.916 15 C -0.176 4.176 16 C -0.092 4.092 17 C -0.198 4.198 18 Br 0.020 6.980 19 C -0.088 4.088 20 C -0.141 4.141 21 C 0.015 3.985 22 C -0.223 4.223 23 C -0.259 4.259 24 H 0.076 0.924 25 H 0.104 0.896 26 H 0.096 0.904 27 H 0.243 0.757 28 H 0.150 0.850 29 H 0.149 0.851 30 H 0.151 0.849 31 H 0.167 0.833 32 H 0.110 0.890 33 H 0.122 0.878 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 9.563 -2.246 -16.258 18.995 hybrid contribution 0.591 1.631 0.290 1.759 sum 10.153 -0.615 -15.968 18.932 Atomic orbital electron populations 1.69837 1.05846 1.26838 1.50598 1.25441 0.95173 0.97585 0.98434 0.87078 0.81205 0.84983 0.76992 1.21325 1.22306 1.18684 1.18792 0.84998 0.94648 1.40768 0.89428 1.43264 1.07613 1.45010 1.30360 1.21435 1.00090 0.94785 0.84670 1.23386 0.76445 0.87711 0.85628 1.90653 1.40533 1.18307 1.86541 1.44312 1.62409 1.22624 1.04256 1.18051 0.92949 0.94608 0.85987 1.20858 0.99912 1.04032 0.92799 1.20792 0.95624 0.95223 0.97550 1.21625 1.00953 1.04704 0.92536 1.96648 1.95613 1.79170 1.26556 1.21011 0.98424 0.98280 0.91088 1.21370 0.96618 0.98029 0.98036 1.21044 0.94261 0.96052 0.87133 1.23075 1.00990 0.93136 1.05074 1.23400 0.98983 1.00796 1.02767 0.92440 0.89644 0.90367 0.75747 0.85046 0.85078 0.84899 0.83299 0.89021 0.87756 0.90327 0.90571 0.89059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.25 13.97 55.49 0.78 -25.48 16 2 C 0.03 0.95 5.34 -17.43 -0.09 0.86 16 3 Si 0.87 20.17 24.84 -169.99 -4.22 15.94 16 4 H -0.28 -6.20 6.69 56.52 0.38 -5.82 16 5 H -0.30 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.26 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.26 -7.09 9.09 -15.06 -0.14 -7.22 16 8 H 0.09 2.60 6.68 -52.48 -0.35 2.25 16 9 N -0.55 -12.46 1.95 -167.02 -0.33 -12.79 16 10 C 0.12 2.38 5.02 -5.19 -0.03 2.35 16 11 C 0.48 9.26 7.65 -10.98 -0.08 9.18 16 12 O -0.49 -11.21 14.04 5.55 0.08 -11.13 16 13 N -0.69 -10.27 5.35 -9.86 -0.05 -10.32 16 14 C 0.18 2.68 6.30 -83.68 -0.53 2.15 16 15 C -0.15 -1.82 9.96 -39.40 -0.39 -2.21 16 16 C -0.07 -0.82 9.78 -39.59 -0.39 -1.20 16 17 C -0.12 -1.50 6.22 -39.49 -0.25 -1.74 16 18 Br -0.06 -0.72 33.70 -68.01 -2.29 -3.01 16 19 C -0.07 -0.95 9.78 -39.59 -0.39 -1.34 16 20 C -0.12 -1.95 8.66 -39.40 -0.34 -2.29 16 21 C 0.12 2.45 6.57 -67.93 -0.45 2.01 16 22 C -0.18 -3.52 9.81 -26.69 -0.26 -3.78 16 23 C -0.22 -3.98 10.34 -26.69 -0.28 -4.26 16 24 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.09 1.78 2.90 -51.93 -0.15 1.63 16 26 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 27 H 0.41 4.56 8.81 -40.82 -0.36 4.20 16 28 H 0.13 1.17 8.06 -52.48 -0.42 0.74 16 29 H 0.13 1.19 8.06 -52.48 -0.42 0.76 16 30 H 0.13 1.70 8.06 -52.48 -0.42 1.28 16 31 H 0.15 2.87 6.33 -52.49 -0.33 2.53 16 32 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 33 H 0.10 2.25 6.37 -51.93 -0.33 1.92 16 34 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 LS Contribution 323.48 15.07 4.87 4.87 Total: -1.00 -31.08 323.48 -8.83 -39.91 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -4.06 Total: 9.51 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -3.60 Total: -7.51 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: 0.40 Total: -48.59 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.08 Total: -11.13 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.22 Total: 15.94 kcal Atomic # 35 Polarization: -0.72 SS G_CDS: -2.29 Total: -3.01 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.08 -8.83 -39.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063516447.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.763 kcal (2) G-P(sol) polarization free energy of solvation -31.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds