Wall clock time and date at job start Tue Mar 31 2020 21:03:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31412 * 1
3 3 Si 1.86804 * 119.99652 * 2 1
4 4 H 1.48502 * 109.46727 * 179.97438 * 3 2 1
5 5 H 1.48500 * 109.47110 * 299.99849 * 3 2 1
6 6 H 1.48498 * 109.47193 * 59.99866 * 3 2 1
7 7 C 1.38949 * 120.00362 * 179.97438 * 2 1 3
8 8 H 1.07997 * 119.99982 * 179.97438 * 7 2 1
9 9 N 1.37098 * 119.99550 * 0.02562 * 7 2 1
10 10 C 1.34780 * 119.99477 * 179.97438 * 9 7 2
11 11 O 1.21289 * 120.00289 * 359.97438 * 10 9 7
12 12 C 1.50705 * 119.99645 * 179.97438 * 10 9 7
13 13 N 1.46894 * 109.47011 * 179.97438 * 12 10 9
14 14 C 1.46906 * 111.00235 * 186.18512 * 13 12 10
15 15 C 1.50701 * 115.55986 * 319.80213 * 14 13 12
16 16 C 1.38245 * 119.98672 * 119.82128 * 15 14 13
17 17 C 1.38214 * 120.00550 * 179.76831 * 16 15 14
18 18 C 1.38325 * 119.99247 * 0.50369 * 17 16 15
19 19 Br 1.89098 * 120.01321 * 179.76772 * 18 17 16
20 20 C 1.38326 * 119.97832 * 359.75141 * 18 17 16
21 21 C 1.38220 * 119.99039 * 359.97438 * 20 18 17
22 22 C 1.53001 * 117.49673 * 105.48778 * 14 13 12
23 23 C 1.52993 * 117.50076 * 174.11000 * 14 13 12
24 24 H 0.97004 * 120.00439 * 0.02562 * 1 2 3
25 25 H 0.97000 * 120.00717 * 359.97438 * 9 7 2
26 26 H 1.09004 * 109.47090 * 59.99688 * 12 10 9
27 27 H 1.08995 * 109.47375 * 300.00240 * 12 10 9
28 28 H 1.00896 * 111.00627 * 310.14486 * 13 12 10
29 29 H 1.07999 * 119.99510 * 0.02562 * 16 15 14
30 30 H 1.08001 * 120.00726 * 180.27847 * 17 16 15
31 31 H 1.08008 * 120.00364 * 179.97438 * 20 18 17
32 32 H 1.08004 * 119.99173 * 180.02562 * 21 20 18
33 33 H 1.08994 * 117.50119 * 214.98075 * 22 14 13
34 34 H 1.09003 * 117.49868 * 0.02562 * 22 14 13
35 35 H 1.09004 * 117.49701 * 0.02562 * 23 14 13
36 36 H 1.08997 * 117.50347 * 145.02232 * 23 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2480 1.6178 0.0000
4 1 3.7081 1.3465 0.0006
5 1 1.8893 2.3965 -1.2125
6 1 1.8892 2.3965 1.2125
7 6 2.0089 -1.2033 0.0005
8 1 3.0889 -1.2032 0.0001
9 7 1.3234 -2.3906 0.0005
10 6 1.9974 -3.5578 0.0005
11 8 3.2103 -3.5577 0.0001
12 6 1.2439 -4.8629 0.0011
13 7 2.1985 -5.9794 0.0004
14 6 1.5042 -7.2656 -0.1468
15 6 0.2145 -7.4000 0.6210
16 6 -0.9690 -7.6381 -0.0525
17 6 -2.1514 -7.7661 0.6517
18 6 -2.1520 -7.6457 2.0297
19 35 -3.7703 -7.8142 2.9932
20 6 -0.9683 -7.4022 2.7027
21 6 0.2146 -7.2799 1.9982
22 6 1.5945 -7.9658 -1.5042
23 6 2.3663 -8.5197 -0.3049
24 1 -0.4851 0.8400 -0.0004
25 1 0.3534 -2.3907 0.0005
26 1 0.6169 -4.9208 -0.8886
27 1 0.6176 -4.9205 0.8913
28 1 2.8946 -5.8597 -0.7202
29 1 -0.9691 -7.7281 -1.1288
30 1 -3.0753 -7.9566 0.1259
31 1 -0.9683 -7.3077 3.7787
32 1 1.1389 -7.0903 2.5237
33 1 0.7212 -8.5236 -1.8419
34 1 2.1694 -7.4723 -2.2879
35 1 3.4486 -8.3904 -0.2992
36 1 2.0006 -9.4420 0.1465
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000066497290.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:03:37
Heat of formation + Delta-G solvation = 20.004058 kcal
Electronic energy + Delta-G solvation = -20490.604295 eV
Core-core repulsion = 17214.603152 eV
Total energy + Delta-G solvation = -3276.001144 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 338.037 amu
Computer time = 0.50 seconds
Orbital eigenvalues (eV)
-40.13453 -38.28814 -37.35097 -34.05326 -32.73729 -32.25275 -31.23192 -31.14990
-29.25045 -26.55466 -24.09996 -23.32552 -23.10448 -22.01348 -19.81912 -19.28769
-17.92226 -16.99593 -16.36689 -15.59498 -15.47197 -14.96619 -14.87715 -14.46156
-14.07008 -14.01258 -13.63309 -13.34157 -13.15230 -12.85321 -12.39622 -11.98112
-11.62098 -11.59640 -11.49798 -11.33468 -11.15895 -11.08416 -10.69215 -10.44514
-10.39510 -10.35155 -10.23406 -9.54021 -9.15899 -8.69844 -8.43374 -8.04354
-7.96727 -6.43009 -3.84132 0.89799 1.17346 1.47201 3.15503 3.26325
3.33396 3.40894 3.62984 3.87309 4.06836 4.23456 4.40160 4.63452
4.76287 4.81300 5.01869 5.10138 5.22057 5.25971 5.30693 5.39883
5.54278 5.58124 5.79736 5.80121 5.84852 5.99786 6.02498 6.05194
6.07310 6.24716 6.40262 6.64621 7.14062 7.54064 7.56572 8.04266
8.58547 9.15797 9.51916 10.02529 10.74595
Molecular weight = 338.04amu
Principal moments of inertia in cm(-1)
A = 0.011436 B = 0.003228 C = 0.002629
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2447.899697 B = 8670.860577 C =10646.111836
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.900 5.900
2 C 0.023 3.977
3 Si 0.929 3.071
4 H -0.268 1.268
5 H -0.281 1.281
6 H -0.281 1.281
7 C -0.300 4.300
8 H 0.104 0.896
9 N -0.560 5.560
10 C 0.439 3.561
11 O -0.586 6.586
12 C 0.052 3.948
13 N -0.624 5.624
14 C 0.089 3.911
15 C -0.026 4.026
16 C -0.107 4.107
17 C -0.092 4.092
18 C -0.090 4.090
19 Br -0.058 7.058
20 C -0.092 4.092
21 C -0.087 4.087
22 C -0.215 4.215
23 C -0.155 4.155
24 H 0.271 0.729
25 H 0.393 0.607
26 H 0.046 0.954
27 H 0.087 0.913
28 H 0.358 0.642
29 H 0.132 0.868
30 H 0.132 0.868
31 H 0.134 0.866
32 H 0.139 0.861
33 H 0.096 0.904
34 H 0.098 0.902
35 H 0.102 0.898
36 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.370 -19.745 2.449 21.586
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.541 5.541
2 C -0.179 4.179
3 Si 0.756 3.244
4 H -0.192 1.192
5 H -0.207 1.207
6 H -0.207 1.207
7 C -0.430 4.430
8 H 0.122 0.878
9 N -0.197 5.197
10 C 0.224 3.776
11 O -0.471 6.471
12 C -0.080 4.080
13 N -0.255 5.255
14 C -0.003 4.003
15 C -0.027 4.027
16 C -0.126 4.126
17 C -0.111 4.111
18 C -0.169 4.169
19 Br 0.028 6.972
20 C -0.111 4.111
21 C -0.106 4.106
22 C -0.255 4.255
23 C -0.193 4.193
24 H 0.081 0.919
25 H 0.226 0.774
26 H 0.064 0.936
27 H 0.105 0.895
28 H 0.179 0.821
29 H 0.150 0.850
30 H 0.150 0.850
31 H 0.151 0.849
32 H 0.157 0.843
33 H 0.114 0.886
34 H 0.116 0.884
35 H 0.120 0.880
36 H 0.116 0.884
Dipole moment (debyes) X Y Z Total
from point charges -8.241 -19.626 3.505 21.572
hybrid contribution -0.185 0.978 -1.162 1.530
sum -8.426 -18.648 2.343 20.597
Atomic orbital electron populations
1.69624 1.05959 1.28119 1.50401 1.25272 0.95623 0.99745 0.97220
0.85804 0.79725 0.81106 0.77739 1.19185 1.20739 1.20694 1.19760
0.93408 0.82178 1.47633 0.87823 1.41855 1.09244 1.04588 1.63974
1.19779 0.88329 0.84763 0.84692 1.90521 1.13707 1.87056 1.55823
1.21677 0.94504 0.90319 1.01490 1.59979 1.13634 0.97897 1.54009
1.20165 0.93205 0.90401 0.96560 1.19000 0.92427 0.97876 0.93368
1.21064 0.91273 1.00000 1.00284 1.21037 0.98818 0.99296 0.91986
1.21791 0.92036 1.08242 0.94863 1.96706 1.29058 1.96996 1.74457
1.21146 0.90922 0.98592 1.00470 1.21096 0.98253 0.97794 0.93463
1.23739 1.03472 1.05749 0.92533 1.23135 0.99021 0.96206 1.00928
0.91868 0.77413 0.93613 0.89483 0.82065 0.85034 0.84997 0.84859
0.84323 0.88578 0.88361 0.87962 0.88420
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -24.57 13.05 55.50 0.72 -23.85 16
2 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16
3 Si 0.93 21.04 29.55 -169.99 -5.02 16.02 16
4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16
5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16
6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16
7 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16
8 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16
9 N -0.56 -14.31 5.29 -10.96 -0.06 -14.36 16
10 C 0.44 10.39 7.81 -10.98 -0.09 10.31 16
11 O -0.59 -15.81 15.64 5.55 0.09 -15.73 16
12 C 0.05 0.94 5.52 -4.98 -0.03 0.91 16
13 N -0.62 -10.02 6.48 -102.40 -0.66 -10.68 16
14 C 0.09 1.12 2.39 -132.75 -0.32 0.80 16
15 C -0.03 -0.31 3.90 -104.62 -0.41 -0.72 16
16 C -0.11 -1.16 9.26 -39.59 -0.37 -1.53 16
17 C -0.09 -0.97 9.79 -39.56 -0.39 -1.36 16
18 C -0.09 -1.01 6.22 -39.52 -0.25 -1.26 16
19 Br -0.06 -0.60 33.70 -68.01 -2.29 -2.89 16
20 C -0.09 -1.04 9.79 -39.56 -0.39 -1.43 16
21 C -0.09 -1.06 8.99 -39.59 -0.36 -1.41 16
22 C -0.22 -2.25 9.46 -26.73 -0.25 -2.50 16
23 C -0.16 -1.63 10.16 -26.74 -0.27 -1.90 16
24 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16
25 H 0.39 9.67 7.90 -40.82 -0.32 9.34 16
26 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16
27 H 0.09 1.53 6.81 -51.93 -0.35 1.18 16
28 H 0.36 5.96 8.03 -39.29 -0.32 5.65 16
29 H 0.13 1.22 6.72 -52.49 -0.35 0.87 16
30 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16
31 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16
32 H 0.14 1.70 8.06 -52.48 -0.42 1.27 16
33 H 0.10 0.87 6.84 -51.93 -0.36 0.51 16
34 H 0.10 1.04 8.12 -51.93 -0.42 0.61 16
35 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16
36 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16
LS Contribution 331.97 15.07 5.00 5.00
Total: -1.00 -30.34 331.97 -9.74 -40.08
By element:
Atomic # 1 Polarization: 18.68 SS G_CDS: -4.17 Total: 14.51 kcal
Atomic # 6 Polarization: -4.75 SS G_CDS: -3.35 Total: -8.10 kcal
Atomic # 7 Polarization: -48.90 SS G_CDS: 0.00 Total: -48.89 kcal
Atomic # 8 Polarization: -15.81 SS G_CDS: 0.09 Total: -15.73 kcal
Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal
Atomic # 35 Polarization: -0.60 SS G_CDS: -2.29 Total: -2.89 kcal
Total LS contribution 5.00 Total: 5.00 kcal
Total: -30.34 -9.74 -40.08 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000066497290.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 60.081 kcal
(2) G-P(sol) polarization free energy of solvation -30.339 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.741 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.737 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.077 kcal
(6) G-S(sol) free energy of system = (1) + (5) 20.004 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.50 seconds