Wall clock time and date at job start Tue Mar 31 2020 21:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86804 * 119.99652 * 2 1 4 4 H 1.48502 * 109.46727 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47110 * 299.99849 * 3 2 1 6 6 H 1.48498 * 109.47193 * 59.99866 * 3 2 1 7 7 C 1.38949 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99982 * 179.97438 * 7 2 1 9 9 N 1.37098 * 119.99550 * 0.02562 * 7 2 1 10 10 C 1.34780 * 119.99477 * 179.97438 * 9 7 2 11 11 O 1.21289 * 120.00289 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99645 * 179.97438 * 10 9 7 13 13 N 1.46894 * 109.47011 * 179.97438 * 12 10 9 14 14 C 1.46906 * 111.00235 * 186.18512 * 13 12 10 15 15 C 1.50701 * 115.55986 * 319.80213 * 14 13 12 16 16 C 1.38245 * 119.98672 * 119.82128 * 15 14 13 17 17 C 1.38214 * 120.00550 * 179.76831 * 16 15 14 18 18 C 1.38325 * 119.99247 * 0.50369 * 17 16 15 19 19 Br 1.89098 * 120.01321 * 179.76772 * 18 17 16 20 20 C 1.38326 * 119.97832 * 359.75141 * 18 17 16 21 21 C 1.38220 * 119.99039 * 359.97438 * 20 18 17 22 22 C 1.53001 * 117.49673 * 105.48778 * 14 13 12 23 23 C 1.52993 * 117.50076 * 174.11000 * 14 13 12 24 24 H 0.97004 * 120.00439 * 0.02562 * 1 2 3 25 25 H 0.97000 * 120.00717 * 359.97438 * 9 7 2 26 26 H 1.09004 * 109.47090 * 59.99688 * 12 10 9 27 27 H 1.08995 * 109.47375 * 300.00240 * 12 10 9 28 28 H 1.00896 * 111.00627 * 310.14486 * 13 12 10 29 29 H 1.07999 * 119.99510 * 0.02562 * 16 15 14 30 30 H 1.08001 * 120.00726 * 180.27847 * 17 16 15 31 31 H 1.08008 * 120.00364 * 179.97438 * 20 18 17 32 32 H 1.08004 * 119.99173 * 180.02562 * 21 20 18 33 33 H 1.08994 * 117.50119 * 214.98075 * 22 14 13 34 34 H 1.09003 * 117.49868 * 0.02562 * 22 14 13 35 35 H 1.09004 * 117.49701 * 0.02562 * 23 14 13 36 36 H 1.08997 * 117.50347 * 145.02232 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8892 2.3965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5577 0.0001 12 6 1.2439 -4.8629 0.0011 13 7 2.1985 -5.9794 0.0004 14 6 1.5042 -7.2656 -0.1468 15 6 0.2145 -7.4000 0.6210 16 6 -0.9690 -7.6381 -0.0525 17 6 -2.1514 -7.7661 0.6517 18 6 -2.1520 -7.6457 2.0297 19 35 -3.7703 -7.8142 2.9932 20 6 -0.9683 -7.4022 2.7027 21 6 0.2146 -7.2799 1.9982 22 6 1.5945 -7.9658 -1.5042 23 6 2.3663 -8.5197 -0.3049 24 1 -0.4851 0.8400 -0.0004 25 1 0.3534 -2.3907 0.0005 26 1 0.6169 -4.9208 -0.8886 27 1 0.6176 -4.9205 0.8913 28 1 2.8946 -5.8597 -0.7202 29 1 -0.9691 -7.7281 -1.1288 30 1 -3.0753 -7.9566 0.1259 31 1 -0.9683 -7.3077 3.7787 32 1 1.1389 -7.0903 2.5237 33 1 0.7212 -8.5236 -1.8419 34 1 2.1694 -7.4723 -2.2879 35 1 3.4486 -8.3904 -0.2992 36 1 2.0006 -9.4420 0.1465 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066497290.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:37 Heat of formation + Delta-G solvation = 20.004058 kcal Electronic energy + Delta-G solvation = -20490.604295 eV Core-core repulsion = 17214.603152 eV Total energy + Delta-G solvation = -3276.001144 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.037 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.13453 -38.28814 -37.35097 -34.05326 -32.73729 -32.25275 -31.23192 -31.14990 -29.25045 -26.55466 -24.09996 -23.32552 -23.10448 -22.01348 -19.81912 -19.28769 -17.92226 -16.99593 -16.36689 -15.59498 -15.47197 -14.96619 -14.87715 -14.46156 -14.07008 -14.01258 -13.63309 -13.34157 -13.15230 -12.85321 -12.39622 -11.98112 -11.62098 -11.59640 -11.49798 -11.33468 -11.15895 -11.08416 -10.69215 -10.44514 -10.39510 -10.35155 -10.23406 -9.54021 -9.15899 -8.69844 -8.43374 -8.04354 -7.96727 -6.43009 -3.84132 0.89799 1.17346 1.47201 3.15503 3.26325 3.33396 3.40894 3.62984 3.87309 4.06836 4.23456 4.40160 4.63452 4.76287 4.81300 5.01869 5.10138 5.22057 5.25971 5.30693 5.39883 5.54278 5.58124 5.79736 5.80121 5.84852 5.99786 6.02498 6.05194 6.07310 6.24716 6.40262 6.64621 7.14062 7.54064 7.56572 8.04266 8.58547 9.15797 9.51916 10.02529 10.74595 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.011436 B = 0.003228 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.899697 B = 8670.860577 C =10646.111836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.023 3.977 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.300 4.300 8 H 0.104 0.896 9 N -0.560 5.560 10 C 0.439 3.561 11 O -0.586 6.586 12 C 0.052 3.948 13 N -0.624 5.624 14 C 0.089 3.911 15 C -0.026 4.026 16 C -0.107 4.107 17 C -0.092 4.092 18 C -0.090 4.090 19 Br -0.058 7.058 20 C -0.092 4.092 21 C -0.087 4.087 22 C -0.215 4.215 23 C -0.155 4.155 24 H 0.271 0.729 25 H 0.393 0.607 26 H 0.046 0.954 27 H 0.087 0.913 28 H 0.358 0.642 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.134 0.866 32 H 0.139 0.861 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.370 -19.745 2.449 21.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.430 4.430 8 H 0.122 0.878 9 N -0.197 5.197 10 C 0.224 3.776 11 O -0.471 6.471 12 C -0.080 4.080 13 N -0.255 5.255 14 C -0.003 4.003 15 C -0.027 4.027 16 C -0.126 4.126 17 C -0.111 4.111 18 C -0.169 4.169 19 Br 0.028 6.972 20 C -0.111 4.111 21 C -0.106 4.106 22 C -0.255 4.255 23 C -0.193 4.193 24 H 0.081 0.919 25 H 0.226 0.774 26 H 0.064 0.936 27 H 0.105 0.895 28 H 0.179 0.821 29 H 0.150 0.850 30 H 0.150 0.850 31 H 0.151 0.849 32 H 0.157 0.843 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.120 0.880 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.241 -19.626 3.505 21.572 hybrid contribution -0.185 0.978 -1.162 1.530 sum -8.426 -18.648 2.343 20.597 Atomic orbital electron populations 1.69624 1.05959 1.28119 1.50401 1.25272 0.95623 0.99745 0.97220 0.85804 0.79725 0.81106 0.77739 1.19185 1.20739 1.20694 1.19760 0.93408 0.82178 1.47633 0.87823 1.41855 1.09244 1.04588 1.63974 1.19779 0.88329 0.84763 0.84692 1.90521 1.13707 1.87056 1.55823 1.21677 0.94504 0.90319 1.01490 1.59979 1.13634 0.97897 1.54009 1.20165 0.93205 0.90401 0.96560 1.19000 0.92427 0.97876 0.93368 1.21064 0.91273 1.00000 1.00284 1.21037 0.98818 0.99296 0.91986 1.21791 0.92036 1.08242 0.94863 1.96706 1.29058 1.96996 1.74457 1.21146 0.90922 0.98592 1.00470 1.21096 0.98253 0.97794 0.93463 1.23739 1.03472 1.05749 0.92533 1.23135 0.99021 0.96206 1.00928 0.91868 0.77413 0.93613 0.89483 0.82065 0.85034 0.84997 0.84859 0.84323 0.88578 0.88361 0.87962 0.88420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.57 13.05 55.50 0.72 -23.85 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 3 Si 0.93 21.04 29.55 -169.99 -5.02 16.02 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 8 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 9 N -0.56 -14.31 5.29 -10.96 -0.06 -14.36 16 10 C 0.44 10.39 7.81 -10.98 -0.09 10.31 16 11 O -0.59 -15.81 15.64 5.55 0.09 -15.73 16 12 C 0.05 0.94 5.52 -4.98 -0.03 0.91 16 13 N -0.62 -10.02 6.48 -102.40 -0.66 -10.68 16 14 C 0.09 1.12 2.39 -132.75 -0.32 0.80 16 15 C -0.03 -0.31 3.90 -104.62 -0.41 -0.72 16 16 C -0.11 -1.16 9.26 -39.59 -0.37 -1.53 16 17 C -0.09 -0.97 9.79 -39.56 -0.39 -1.36 16 18 C -0.09 -1.01 6.22 -39.52 -0.25 -1.26 16 19 Br -0.06 -0.60 33.70 -68.01 -2.29 -2.89 16 20 C -0.09 -1.04 9.79 -39.56 -0.39 -1.43 16 21 C -0.09 -1.06 8.99 -39.59 -0.36 -1.41 16 22 C -0.22 -2.25 9.46 -26.73 -0.25 -2.50 16 23 C -0.16 -1.63 10.16 -26.74 -0.27 -1.90 16 24 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 25 H 0.39 9.67 7.90 -40.82 -0.32 9.34 16 26 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 27 H 0.09 1.53 6.81 -51.93 -0.35 1.18 16 28 H 0.36 5.96 8.03 -39.29 -0.32 5.65 16 29 H 0.13 1.22 6.72 -52.49 -0.35 0.87 16 30 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 31 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 32 H 0.14 1.70 8.06 -52.48 -0.42 1.27 16 33 H 0.10 0.87 6.84 -51.93 -0.36 0.51 16 34 H 0.10 1.04 8.12 -51.93 -0.42 0.61 16 35 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 331.97 15.07 5.00 5.00 Total: -1.00 -30.34 331.97 -9.74 -40.08 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -4.17 Total: 14.51 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -3.35 Total: -8.10 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: 0.00 Total: -48.89 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: 0.09 Total: -15.73 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 35 Polarization: -0.60 SS G_CDS: -2.29 Total: -2.89 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.34 -9.74 -40.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066497290.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.081 kcal (2) G-P(sol) polarization free energy of solvation -30.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds