Wall clock time and date at job start Tue Mar 31 2020 21:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86804 * 119.99652 * 2 1 4 4 H 1.48502 * 109.46727 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47110 * 299.99849 * 3 2 1 6 6 H 1.48498 * 109.47193 * 59.99866 * 3 2 1 7 7 C 1.38949 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99982 * 179.97438 * 7 2 1 9 9 N 1.37098 * 119.99550 * 0.02562 * 7 2 1 10 10 C 1.34780 * 119.99477 * 179.97438 * 9 7 2 11 11 O 1.21289 * 120.00289 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99645 * 179.97438 * 10 9 7 13 13 N 1.46894 * 109.47011 * 179.97438 * 12 10 9 14 14 C 1.46906 * 111.00235 * 186.18512 * 13 12 10 15 15 C 1.50701 * 115.55986 * 319.80213 * 14 13 12 16 16 C 1.38245 * 119.98672 * 119.82128 * 15 14 13 17 17 C 1.38214 * 120.00550 * 179.76831 * 16 15 14 18 18 C 1.38325 * 119.99247 * 0.50369 * 17 16 15 19 19 Br 1.89098 * 120.01321 * 179.76772 * 18 17 16 20 20 C 1.38326 * 119.97832 * 359.75141 * 18 17 16 21 21 C 1.38220 * 119.99039 * 359.97438 * 20 18 17 22 22 C 1.53001 * 117.49673 * 105.48778 * 14 13 12 23 23 C 1.52993 * 117.50076 * 174.11000 * 14 13 12 24 24 H 0.97004 * 120.00439 * 0.02562 * 1 2 3 25 25 H 0.97000 * 120.00717 * 359.97438 * 9 7 2 26 26 H 1.09004 * 109.47090 * 59.99688 * 12 10 9 27 27 H 1.08995 * 109.47375 * 300.00240 * 12 10 9 28 28 H 1.00896 * 111.00627 * 310.14486 * 13 12 10 29 29 H 1.07999 * 119.99510 * 0.02562 * 16 15 14 30 30 H 1.08001 * 120.00726 * 180.27847 * 17 16 15 31 31 H 1.08008 * 120.00364 * 179.97438 * 20 18 17 32 32 H 1.08004 * 119.99173 * 180.02562 * 21 20 18 33 33 H 1.08994 * 117.50119 * 214.98075 * 22 14 13 34 34 H 1.09003 * 117.49868 * 0.02562 * 22 14 13 35 35 H 1.09004 * 117.49701 * 0.02562 * 23 14 13 36 36 H 1.08997 * 117.50347 * 145.02232 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8892 2.3965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5577 0.0001 12 6 1.2439 -4.8629 0.0011 13 7 2.1985 -5.9794 0.0004 14 6 1.5042 -7.2656 -0.1468 15 6 0.2145 -7.4000 0.6210 16 6 -0.9690 -7.6381 -0.0525 17 6 -2.1514 -7.7661 0.6517 18 6 -2.1520 -7.6457 2.0297 19 35 -3.7703 -7.8142 2.9932 20 6 -0.9683 -7.4022 2.7027 21 6 0.2146 -7.2799 1.9982 22 6 1.5945 -7.9658 -1.5042 23 6 2.3663 -8.5197 -0.3049 24 1 -0.4851 0.8400 -0.0004 25 1 0.3534 -2.3907 0.0005 26 1 0.6169 -4.9208 -0.8886 27 1 0.6176 -4.9205 0.8913 28 1 2.8946 -5.8597 -0.7202 29 1 -0.9691 -7.7281 -1.1288 30 1 -3.0753 -7.9566 0.1259 31 1 -0.9683 -7.3077 3.7787 32 1 1.1389 -7.0903 2.5237 33 1 0.7212 -8.5236 -1.8419 34 1 2.1694 -7.4723 -2.2879 35 1 3.4486 -8.3904 -0.2992 36 1 2.0006 -9.4420 0.1465 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066497290.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:36 Heat of formation + Delta-G solvation = 0.895539 kcal Electronic energy + Delta-G solvation = -20491.432903 eV Core-core repulsion = 17214.603152 eV Total energy + Delta-G solvation = -3276.829751 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.037 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.09922 -40.02820 -38.41057 -36.04161 -34.10253 -33.23956 -33.09566 -32.02702 -30.10186 -28.25346 -25.88184 -24.20733 -24.00724 -22.84431 -21.16029 -20.75264 -19.94547 -18.09057 -17.75190 -16.89844 -16.60558 -16.42363 -16.03689 -15.80073 -15.74184 -15.45307 -14.59160 -14.43501 -14.20490 -14.11157 -13.90610 -13.53808 -13.36905 -12.92588 -12.54183 -12.43931 -12.40402 -12.22847 -12.11814 -12.03103 -11.65702 -11.52985 -11.30116 -11.25069 -10.37269 -10.04463 -10.00752 -9.57036 -9.19516 -8.48398 -5.97747 0.02645 0.32404 0.63091 1.35801 1.41640 1.55932 1.99956 2.26948 2.54328 2.62493 3.01952 3.18660 3.37702 3.58793 3.80091 3.92196 3.96203 4.09967 4.24668 4.37775 4.43626 4.48459 4.53780 4.57056 4.71282 4.77471 4.97704 5.01337 5.17511 5.20779 5.24298 5.39623 5.52185 5.78729 5.86530 6.05269 6.31075 6.56079 7.09584 7.51767 8.05991 8.69174 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.011436 B = 0.003228 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.899697 B = 8670.860577 C =10646.111836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.011 4.011 3 Si 0.993 3.007 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.335 4.335 8 H 0.080 0.920 9 N -0.570 5.570 10 C 0.437 3.563 11 O -0.622 6.622 12 C 0.074 3.926 13 N -0.636 5.636 14 C 0.069 3.931 15 C -0.034 4.034 16 C -0.106 4.106 17 C -0.091 4.091 18 C -0.100 4.100 19 Br -0.051 7.051 20 C -0.097 4.097 21 C -0.100 4.100 22 C -0.200 4.200 23 C -0.146 4.146 24 H 0.278 0.722 25 H 0.396 0.604 26 H 0.062 0.938 27 H 0.093 0.907 28 H 0.352 0.648 29 H 0.150 0.850 30 H 0.151 0.849 31 H 0.142 0.858 32 H 0.130 0.870 33 H 0.116 0.884 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.348 -20.425 1.878 22.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.211 4.211 3 Si 0.817 3.183 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.464 4.464 8 H 0.098 0.902 9 N -0.207 5.207 10 C 0.224 3.776 11 O -0.509 6.509 12 C -0.058 4.058 13 N -0.267 5.267 14 C -0.022 4.022 15 C -0.035 4.035 16 C -0.125 4.125 17 C -0.111 4.111 18 C -0.179 4.179 19 Br 0.034 6.966 20 C -0.117 4.117 21 C -0.119 4.119 22 C -0.239 4.239 23 C -0.184 4.184 24 H 0.088 0.912 25 H 0.229 0.771 26 H 0.080 0.920 27 H 0.111 0.889 28 H 0.172 0.828 29 H 0.168 0.832 30 H 0.168 0.832 31 H 0.159 0.841 32 H 0.148 0.852 33 H 0.134 0.866 34 H 0.115 0.885 35 H 0.118 0.882 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -9.248 -20.333 2.936 22.529 hybrid contribution 0.104 1.111 -0.966 1.476 sum -9.143 -19.221 1.970 21.376 Atomic orbital electron populations 1.69683 1.06904 1.29328 1.50109 1.26056 0.96514 1.02448 0.96087 0.84867 0.78076 0.77002 0.78372 1.19686 1.19474 1.19621 1.19723 0.92747 0.83913 1.50055 0.90168 1.41922 1.09306 1.04751 1.64673 1.20760 0.88205 0.86092 0.82513 1.90488 1.15624 1.87898 1.56911 1.21415 0.94099 0.87898 1.02403 1.59956 1.13667 0.98760 1.54297 1.20222 0.94011 0.89221 0.98789 1.19047 0.92676 0.98526 0.93265 1.21266 0.90736 0.99339 1.01201 1.21297 0.99560 0.98447 0.91799 1.21956 0.92232 1.08292 0.95424 1.96710 1.28488 1.96968 1.74438 1.21266 0.90869 0.98515 1.01016 1.21114 0.98270 0.98665 0.93866 1.23783 1.03927 1.04622 0.91583 1.23203 0.98807 0.95631 1.00725 0.91232 0.77075 0.91983 0.88916 0.82759 0.83203 0.83154 0.84059 0.85166 0.86564 0.88479 0.88214 0.86957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.86 13.05 21.66 0.28 -49.57 16 2 C -0.01 -0.59 5.50 84.93 0.47 -0.13 16 3 Si 0.99 42.93 29.55 68.60 2.03 44.96 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 6 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 7 C -0.33 -19.13 9.68 84.04 0.81 -18.32 16 8 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 9 N -0.57 -29.64 5.29 -306.98 -1.62 -31.26 16 10 C 0.44 21.04 7.81 87.66 0.68 21.72 16 11 O -0.62 -34.46 15.64 -3.06 -0.05 -34.51 16 12 C 0.07 2.63 5.52 85.56 0.47 3.11 16 13 N -0.64 -20.14 6.48 -477.87 -3.10 -23.24 16 14 C 0.07 1.63 2.39 2.78 0.01 1.64 16 15 C -0.03 -0.77 3.90 -19.86 -0.08 -0.85 16 16 C -0.11 -2.05 9.26 22.27 0.21 -1.84 16 17 C -0.09 -1.73 9.79 22.28 0.22 -1.51 16 18 C -0.10 -2.09 6.22 22.31 0.14 -1.95 16 19 Br -0.05 -0.99 33.70 -20.37 -0.69 -1.68 16 20 C -0.10 -2.12 9.79 22.29 0.22 -1.90 16 21 C -0.10 -2.36 8.99 22.26 0.20 -2.16 16 22 C -0.20 -3.68 9.46 30.59 0.29 -3.39 16 23 C -0.15 -2.80 10.16 30.59 0.31 -2.49 16 24 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 25 H 0.40 19.72 7.90 -92.71 -0.73 18.99 16 26 H 0.06 2.01 8.12 -2.38 -0.02 1.99 16 27 H 0.09 3.22 6.81 -2.39 -0.02 3.21 16 28 H 0.35 11.72 8.03 -89.70 -0.72 11.00 16 29 H 0.15 2.27 6.72 -2.91 -0.02 2.25 16 30 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 31 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 32 H 0.13 3.21 8.06 -2.91 -0.02 3.19 16 33 H 0.12 1.69 6.84 -2.39 -0.02 1.67 16 34 H 0.10 1.84 8.12 -2.39 -0.02 1.83 16 35 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16 36 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -65.00 331.97 0.48 -64.52 By element: Atomic # 1 Polarization: 39.18 SS G_CDS: -0.32 Total: 38.86 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: 3.95 Total: -8.07 kcal Atomic # 7 Polarization: -99.64 SS G_CDS: -4.44 Total: -104.07 kcal Atomic # 8 Polarization: -34.46 SS G_CDS: -0.05 Total: -34.51 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 35 Polarization: -0.99 SS G_CDS: -0.69 Total: -1.68 kcal Total: -65.00 0.48 -64.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066497290.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.413 kcal (2) G-P(sol) polarization free energy of solvation -65.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds