Wall clock time and date at job start Tue Mar 31 2020 20:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99941 * 2 1 4 4 H 1.48511 * 109.47043 * 269.99997 * 3 2 1 5 5 H 1.48494 * 109.47357 * 29.99661 * 3 2 1 6 6 H 1.48494 * 109.47227 * 150.00179 * 3 2 1 7 7 C 1.38942 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00356 * 180.27782 * 7 2 1 9 9 N 1.37105 * 119.99884 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99968 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99984 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00137 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.47452 * 180.02562 * 12 10 9 14 14 C 1.47162 * 111.00344 * 189.04584 * 13 12 10 15 15 C 1.52895 * 108.50583 * 165.32919 * 14 13 12 16 16 C 1.50714 * 109.96024 * 50.40097 * 15 14 13 17 17 C 1.38759 * 118.48821 * 163.30406 * 16 15 14 18 18 Br 1.89098 * 119.83839 * 359.57757 * 17 16 15 19 19 C 1.38122 * 120.32807 * 179.58234 * 17 16 15 20 20 C 1.38250 * 119.81638 * 0.02562 * 19 17 16 21 21 C 1.38014 * 119.87693 * 0.07946 * 20 19 17 22 22 C 1.37811 * 121.66554 * 343.03894 * 16 15 14 23 23 C 1.46636 * 111.00003 * 66.04371 * 13 12 10 24 24 H 0.97005 * 120.00019 * 0.02562 * 1 2 3 25 25 H 0.96999 * 119.99984 * 0.02562 * 9 7 2 26 26 H 1.09000 * 109.46978 * 300.00347 * 12 10 9 27 27 H 1.08996 * 109.47197 * 59.99985 * 12 10 9 28 28 H 1.09003 * 109.62437 * 285.02982 * 14 13 12 29 29 H 1.08996 * 109.62921 * 45.62158 * 14 13 12 30 30 H 1.08995 * 109.39138 * 290.24751 * 15 14 13 31 31 H 1.08999 * 109.30048 * 170.49775 * 15 14 13 32 32 H 1.08004 * 120.09747 * 179.97438 * 19 17 16 33 33 H 1.07995 * 120.05755 * 180.02562 * 20 19 17 34 34 H 1.08001 * 119.79615 * 179.97438 * 21 20 19 35 35 H 1.09002 * 109.27068 * 296.21403 * 23 13 12 36 36 H 1.09000 * 109.26847 * 55.72699 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4002 5 1 1.4456 2.6527 0.6999 6 1 3.5456 1.4402 0.7000 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0051 9 7 1.3233 -2.3906 0.0016 10 6 1.9972 -3.5578 0.0016 11 8 3.2101 -3.5578 0.0011 12 6 1.2437 -4.8629 0.0022 13 7 2.1982 -5.9795 0.0027 14 6 1.5097 -7.2621 -0.2127 15 6 2.5548 -8.3204 -0.5671 16 6 3.6744 -8.2958 0.4415 17 6 4.5292 -9.3868 0.5083 18 35 4.2634 -10.8622 -0.6443 19 6 5.5731 -9.4006 1.4126 20 6 5.7667 -8.3220 2.2555 21 6 4.9155 -7.2375 2.1909 22 6 3.8659 -7.2219 1.2837 23 6 2.9622 -6.0172 1.2537 24 1 -0.4850 0.8401 -0.0004 25 1 0.3533 -2.3906 0.0016 26 1 0.6174 -4.9204 0.8924 27 1 0.6167 -4.9209 -0.8875 28 1 0.9868 -7.5544 0.6979 29 1 0.7973 -7.1623 -1.0316 30 1 2.9567 -8.1142 -1.5590 31 1 2.0863 -9.3046 -0.5638 32 1 6.2359 -10.2519 1.4617 33 1 6.5820 -8.3285 2.9637 34 1 5.0677 -6.3958 2.8503 35 1 3.5654 -5.1128 1.3343 36 1 2.2716 -6.0651 2.0956 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066497379.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:35 Heat of formation + Delta-G solvation = -21.649914 kcal Electronic energy + Delta-G solvation = -20713.546972 eV Core-core repulsion = 17435.739576 eV Total energy + Delta-G solvation = -3277.807396 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.037 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.29292 -40.05437 -37.93199 -35.91153 -34.34220 -33.40902 -33.00842 -31.46644 -29.72672 -28.83995 -26.65811 -25.09055 -24.02081 -22.81036 -21.07357 -20.54321 -19.85100 -17.94438 -17.43292 -17.11191 -16.75790 -16.40171 -15.85025 -15.72887 -15.48064 -15.43244 -15.02022 -14.52936 -14.18676 -14.10109 -13.60418 -13.50659 -13.20515 -13.06685 -12.94091 -12.67785 -12.44034 -12.40512 -12.12183 -11.98222 -11.71347 -11.67193 -11.44723 -11.09385 -10.28116 -9.99304 -9.69626 -9.60137 -9.19644 -8.45501 -5.93810 0.10687 0.30101 0.63603 1.38329 1.42211 1.54561 2.06542 2.28701 2.58051 2.72823 3.21488 3.35200 3.61055 3.70539 4.01236 4.04383 4.26403 4.28265 4.33064 4.35692 4.40883 4.51453 4.58216 4.62866 4.73360 4.77764 4.86337 4.97328 5.14561 5.23606 5.36270 5.42329 5.52390 5.81258 5.92501 6.05712 6.14942 6.62333 7.14575 7.58131 8.14126 8.71906 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.028569 B = 0.002606 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.852544 B =10740.120662 C =11302.497292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.012 4.012 3 Si 0.991 3.009 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.331 4.331 8 H 0.078 0.922 9 N -0.573 5.573 10 C 0.441 3.559 11 O -0.614 6.614 12 C 0.057 3.943 13 N -0.530 5.530 14 C 0.051 3.949 15 C -0.077 4.077 16 C -0.057 4.057 17 C -0.104 4.104 18 Br -0.043 7.043 19 C -0.096 4.096 20 C -0.114 4.114 21 C -0.111 4.111 22 C -0.081 4.081 23 C 0.093 3.907 24 H 0.277 0.723 25 H 0.396 0.604 26 H 0.071 0.929 27 H 0.116 0.884 28 H 0.048 0.952 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.102 0.898 32 H 0.153 0.847 33 H 0.160 0.840 34 H 0.133 0.867 35 H 0.081 0.919 36 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.443 -23.233 2.514 23.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.212 4.212 3 Si 0.815 3.185 4 H -0.198 1.198 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.461 4.461 8 H 0.096 0.904 9 N -0.211 5.211 10 C 0.228 3.772 11 O -0.500 6.500 12 C -0.074 4.074 13 N -0.255 5.255 14 C -0.076 4.076 15 C -0.114 4.114 16 C -0.059 4.059 17 C -0.184 4.184 18 Br 0.043 6.957 19 C -0.116 4.116 20 C -0.133 4.133 21 C -0.130 4.130 22 C -0.082 4.082 23 C -0.034 4.034 24 H 0.087 0.913 25 H 0.230 0.770 26 H 0.089 0.911 27 H 0.134 0.866 28 H 0.066 0.934 29 H 0.120 0.880 30 H 0.101 0.899 31 H 0.120 0.880 32 H 0.171 0.829 33 H 0.178 0.822 34 H 0.151 0.849 35 H 0.099 0.901 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.325 -23.563 1.681 24.215 hybrid contribution -0.620 1.403 0.865 1.761 sum 4.705 -22.160 2.546 22.797 Atomic orbital electron populations 1.69670 1.06791 1.29232 1.50489 1.26001 0.96514 1.02310 0.96380 0.84957 0.77920 0.77045 0.78605 1.19754 1.19577 1.19769 1.19645 0.92663 0.83997 1.49756 0.90354 1.41924 1.09306 1.04640 1.65231 1.20763 0.88297 0.85911 0.82195 1.90466 1.15711 1.87720 1.56152 1.21799 0.93461 0.88234 1.03896 1.61828 1.25482 1.02827 1.35316 1.22308 0.95747 0.87662 1.01855 1.20713 0.93548 0.99795 0.97339 1.19611 0.97176 0.92156 0.96990 1.21917 1.01020 0.94706 1.00709 1.96642 1.96826 1.39010 1.63244 1.21346 0.96177 0.99858 0.94196 1.21360 0.99808 0.92456 0.99631 1.21438 0.94089 0.99472 0.98015 1.19707 0.97402 0.94425 0.96671 1.21006 0.95762 0.96531 0.90138 0.91343 0.76997 0.91141 0.86589 0.93357 0.88031 0.89904 0.87971 0.82907 0.82243 0.84891 0.90100 0.93478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.49 13.05 21.66 0.28 -49.21 16 2 C -0.01 -0.66 5.50 84.92 0.47 -0.19 16 3 Si 0.99 42.89 29.55 68.60 2.03 44.92 16 4 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 7 C -0.33 -18.72 9.68 84.04 0.81 -17.90 16 8 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 9 N -0.57 -29.19 5.29 -306.99 -1.62 -30.81 16 10 C 0.44 20.81 7.53 87.66 0.66 21.47 16 11 O -0.61 -33.73 13.87 -3.07 -0.04 -33.77 16 12 C 0.06 1.95 5.43 85.56 0.46 2.41 16 13 N -0.53 -17.43 4.42 -905.74 -4.01 -21.44 16 14 C 0.05 1.25 5.57 86.22 0.48 1.73 16 15 C -0.08 -1.80 5.16 29.82 0.15 -1.65 16 16 C -0.06 -1.52 5.77 -19.84 -0.11 -1.63 16 17 C -0.10 -2.41 6.22 22.37 0.14 -2.27 16 18 Br -0.04 -0.83 31.88 -20.37 -0.65 -1.48 16 19 C -0.10 -1.93 9.78 22.25 0.22 -1.71 16 20 C -0.11 -2.28 10.05 22.22 0.22 -2.06 16 21 C -0.11 -2.81 9.65 22.34 0.22 -2.60 16 22 C -0.08 -2.37 5.79 -19.87 -0.12 -2.48 16 23 C 0.09 3.12 4.83 85.59 0.41 3.53 16 24 H 0.28 13.96 8.31 -92.70 -0.77 13.19 16 25 H 0.40 19.10 7.90 -92.71 -0.73 18.37 16 26 H 0.07 2.12 8.07 -2.39 -0.02 2.10 16 27 H 0.12 3.41 7.91 -2.39 -0.02 3.39 16 28 H 0.05 1.07 8.05 -2.39 -0.02 1.05 16 29 H 0.10 2.06 7.87 -2.39 -0.02 2.04 16 30 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.10 1.97 7.15 -2.39 -0.02 1.96 16 32 H 0.15 2.27 8.06 -2.91 -0.02 2.24 16 33 H 0.16 2.16 8.06 -2.91 -0.02 2.13 16 34 H 0.13 3.12 8.06 -2.91 -0.02 3.10 16 35 H 0.08 3.34 5.92 -2.39 -0.01 3.33 16 36 H 0.05 1.46 8.08 -2.39 -0.02 1.44 16 Total: -1.00 -66.76 319.09 0.39 -66.37 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: 0.38 Total: 28.79 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: 4.02 Total: -3.36 kcal Atomic # 7 Polarization: -96.11 SS G_CDS: -5.35 Total: -101.46 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: -0.04 Total: -33.77 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Atomic # 35 Polarization: -0.83 SS G_CDS: -0.65 Total: -1.48 kcal Total: -66.76 0.39 -66.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066497379.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.716 kcal (2) G-P(sol) polarization free energy of solvation -66.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds