Wall clock time and date at job start Tue Mar 31 2020 20:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46899 * 2 1 4 4 C 1.50701 * 109.47377 * 119.99639 * 2 1 3 5 5 H 1.07999 * 120.00291 * 120.00159 * 4 2 1 6 6 C 1.37886 * 119.99538 * 300.00168 * 4 2 1 7 7 N 1.31516 * 120.00144 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99805 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46865 * 60.00027 * 8 6 4 10 10 H 1.48494 * 109.46978 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47053 * 300.00467 * 8 6 4 12 12 N 1.46498 * 109.47300 * 239.99633 * 2 1 3 13 13 C 1.46500 * 119.99815 * 299.99669 * 12 2 1 14 14 S 1.65602 * 119.99940 * 119.99735 * 12 2 1 15 15 O 1.42105 * 106.40019 * 156.45883 * 14 12 2 16 16 O 1.42099 * 106.40315 * 23.54074 * 14 12 2 17 17 C 1.76197 * 107.21830 * 270.00102 * 14 12 2 18 18 C 1.38187 * 120.39644 * 90.00052 * 17 14 12 19 19 N 1.31886 * 120.80670 * 179.72123 * 18 17 14 20 20 C 1.31958 * 121.71911 * 0.27845 * 19 18 17 21 21 Cl 1.73601 * 119.64298 * 179.97438 * 20 19 18 22 22 C 1.38476 * 120.71533 * 359.97438 * 20 19 18 23 23 Cl 1.73602 * 120.43725 * 180.02562 * 22 20 19 24 24 C 1.38659 * 120.39806 * 270.26880 * 17 14 12 25 25 H 1.09007 * 109.47223 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47535 * 300.00135 * 1 2 3 27 27 H 1.08998 * 109.47527 * 60.00737 * 1 2 3 28 28 H 0.97001 * 119.99353 * 179.97438 * 7 6 4 29 29 H 1.08995 * 109.47136 * 269.99842 * 13 12 2 30 30 H 1.09002 * 109.47065 * 30.00598 * 13 12 2 31 31 H 1.09004 * 109.46710 * 150.00271 * 13 12 2 32 32 H 1.08002 * 119.59972 * 0.02562 * 18 17 14 33 33 H 1.07999 * 120.78275 * 0.02562 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2391 2.4828 7 7 0.9435 0.8305 2.6033 8 14 2.3213 -1.1199 4.0081 9 1 3.8063 -1.1204 4.0083 10 1 1.8259 -0.4201 5.2205 11 1 1.8259 -2.5199 4.0079 12 7 2.0183 -0.6907 -1.1961 13 6 1.6645 -2.0933 -1.4278 14 16 2.9704 0.1141 -2.2862 15 8 3.7119 -0.8790 -2.9813 16 8 3.5793 1.1829 -1.5749 17 6 1.8960 0.8533 -3.4711 18 6 1.4065 2.1299 -3.2706 19 7 0.6062 2.6931 -4.1547 20 6 0.2377 2.0657 -5.2556 21 17 -0.8185 2.8580 -6.3828 22 6 0.6844 0.7822 -5.5215 23 17 0.1956 -0.0361 -6.9724 24 6 1.5272 0.1589 -4.6132 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 0.7089 1.1616 3.4844 29 1 2.4158 -2.7377 -0.9714 30 1 0.6904 -2.3003 -0.9845 31 1 1.6239 -2.2854 -2.5000 32 1 1.6866 2.6751 -2.3813 33 1 1.8909 -0.8419 -4.7932 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081674006.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:49 Heat of formation + Delta-G solvation = -41.714125 kcal Electronic energy + Delta-G solvation = -22968.228808 eV Core-core repulsion = 19208.465975 eV Total energy + Delta-G solvation = -3759.762832 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.62323 -37.19193 -37.07202 -36.95738 -36.36794 -35.52739 -33.08045 -32.69962 -31.42499 -29.24129 -25.78875 -25.26144 -24.47970 -24.30959 -20.90756 -19.04055 -18.12112 -17.57800 -17.35497 -16.94527 -16.37902 -15.50082 -15.36094 -15.20167 -14.60951 -14.00025 -13.68826 -13.61331 -13.22036 -12.96725 -12.52115 -12.28841 -12.16024 -12.02342 -11.94918 -11.75942 -11.59131 -11.50070 -11.37797 -11.26948 -11.06754 -10.88718 -10.63817 -10.42113 -10.38163 -10.13148 -10.03545 -9.42717 -9.38746 -8.53647 -8.16647 -6.15368 -4.22721 -0.02174 0.51336 0.65065 1.22711 1.52489 2.85047 3.26465 3.31547 3.33704 3.42849 3.92723 4.00924 4.20203 4.32751 4.35794 4.46795 4.86755 5.05647 5.16227 5.36246 5.40391 5.78815 5.98852 6.19515 6.47132 6.62433 6.66609 6.86309 7.06644 7.24250 7.49411 7.66970 7.92597 8.15159 8.78973 9.43656 10.90287 Molecular weight = 338.00amu Principal moments of inertia in cm(-1) A = 0.020026 B = 0.003643 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.852146 B = 7683.370935 C = 8155.606577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.265 3.735 3 H 0.063 0.937 4 C -0.522 4.522 5 H 0.064 0.936 6 C 0.066 3.934 7 N -0.889 5.889 8 Si 0.900 3.100 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.973 5.973 13 C 0.105 3.895 14 S 2.685 3.315 15 O -0.962 6.962 16 O -0.938 6.938 17 C -0.719 4.719 18 C 0.228 3.772 19 N -0.473 5.473 20 C 0.226 3.774 21 Cl -0.003 7.003 22 C -0.103 4.103 23 Cl -0.029 7.029 24 C 0.046 3.954 25 H 0.036 0.964 26 H 0.096 0.904 27 H 0.008 0.992 28 H 0.265 0.735 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.050 0.950 32 H 0.194 0.806 33 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.035 -0.721 -15.866 16.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.162 3.838 3 H 0.081 0.919 4 C -0.562 4.562 5 H 0.083 0.917 6 C -0.137 4.137 7 N -0.527 5.527 8 Si 0.727 3.273 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.815 5.815 13 C -0.041 4.041 14 S 2.769 3.231 15 O -0.952 6.952 16 O -0.928 6.928 17 C -0.801 4.801 18 C 0.070 3.930 19 N -0.184 5.184 20 C 0.060 3.940 21 Cl 0.026 6.974 22 C -0.134 4.134 23 Cl 0.000 7.000 24 C 0.019 3.981 25 H 0.055 0.945 26 H 0.115 0.885 27 H 0.027 0.973 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.210 0.790 33 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -2.716 0.335 -15.865 16.099 hybrid contribution -0.388 -1.014 0.118 1.092 sum -3.104 -0.679 -15.747 16.064 Atomic orbital electron populations 1.22163 0.98116 1.00018 1.00766 1.18888 0.91411 0.93248 0.80213 0.91938 1.21230 1.32049 1.13215 0.89687 0.91749 1.24900 0.94839 0.94963 0.99015 1.69835 1.36203 1.22544 1.24115 0.86528 0.79397 0.79568 0.81772 1.20055 1.21189 1.20204 1.57478 1.70382 1.19603 1.34031 1.21270 1.02345 0.81435 0.99069 1.02561 0.74062 0.73776 0.72663 1.93542 1.67831 1.58767 1.75050 1.93611 1.72677 1.55960 1.70558 1.32936 1.22667 1.07963 1.16558 1.22763 0.85203 0.89623 0.95429 1.67384 1.13395 1.36111 1.01490 1.21873 0.92294 0.88422 0.91390 1.98443 1.62130 1.80484 1.56365 1.21642 1.03964 0.94060 0.93766 1.98403 1.90219 1.77824 1.33570 1.21292 0.88525 0.99644 0.88683 0.94485 0.88528 0.97253 0.92483 0.92450 0.90508 0.93115 0.78965 0.81209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 8.95 37.16 0.33 -2.85 16 2 C 0.26 5.91 2.62 -69.09 -0.18 5.73 16 3 H 0.06 1.51 6.91 -51.93 -0.36 1.15 16 4 C -0.52 -13.10 8.37 -34.44 -0.29 -13.39 16 5 H 0.06 1.60 7.65 -52.49 -0.40 1.20 16 6 C 0.07 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -23.46 11.32 55.43 0.63 -22.83 16 8 Si 0.90 20.16 29.54 -169.99 -5.02 15.14 16 9 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 12 N -0.97 -18.06 3.06 -115.85 -0.35 -18.41 16 13 C 0.10 1.64 9.53 59.85 0.57 2.21 16 14 S 2.69 46.57 5.65 -107.50 -0.61 45.96 16 15 O -0.96 -17.20 16.44 -57.17 -0.94 -18.14 16 16 O -0.94 -19.05 15.87 -57.17 -0.91 -19.96 16 17 C -0.72 -10.46 5.99 -39.44 -0.24 -10.70 16 18 C 0.23 3.34 10.68 -17.55 -0.19 3.15 16 19 N -0.47 -6.93 10.34 -10.33 -0.11 -7.04 16 20 C 0.23 3.01 7.28 -17.41 -0.13 2.88 16 21 Cl 0.00 -0.04 28.13 -51.86 -1.46 -1.49 16 22 C -0.10 -1.28 6.35 -39.32 -0.25 -1.53 16 23 Cl -0.03 -0.30 28.00 -51.86 -1.45 -1.75 16 24 C 0.05 0.58 9.45 -39.25 -0.37 0.21 16 25 H 0.04 0.73 6.66 -51.92 -0.35 0.39 16 26 H 0.10 2.29 6.07 -51.93 -0.32 1.97 16 27 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.08 1.17 6.43 -51.93 -0.33 0.84 16 31 H 0.05 0.63 7.79 -51.93 -0.40 0.22 16 32 H 0.19 2.65 7.63 -52.49 -0.40 2.25 16 33 H 0.17 1.79 7.71 -52.49 -0.40 1.39 16 LS Contribution 325.63 15.07 4.91 4.91 Total: -1.00 -28.69 325.63 -9.09 -37.78 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: -2.94 Total: -1.47 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -0.83 Total: -12.69 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: 0.17 Total: -48.28 kcal Atomic # 8 Polarization: -36.25 SS G_CDS: -1.85 Total: -38.10 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 16 Polarization: 46.57 SS G_CDS: -0.61 Total: 45.96 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -2.91 Total: -3.25 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.69 -9.09 -37.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081674006.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.935 kcal (2) G-P(sol) polarization free energy of solvation -28.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds