Wall clock time and date at job start Tue Mar 31 2020 20:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46899 * 2 1 4 4 C 1.50701 * 109.47377 * 119.99639 * 2 1 3 5 5 H 1.07999 * 120.00291 * 120.00159 * 4 2 1 6 6 C 1.37886 * 119.99538 * 300.00168 * 4 2 1 7 7 N 1.31516 * 120.00144 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99805 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46865 * 60.00027 * 8 6 4 10 10 H 1.48494 * 109.46978 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47053 * 300.00467 * 8 6 4 12 12 N 1.46498 * 109.47300 * 239.99633 * 2 1 3 13 13 C 1.46500 * 119.99815 * 299.99669 * 12 2 1 14 14 S 1.65602 * 119.99940 * 119.99735 * 12 2 1 15 15 O 1.42105 * 106.40019 * 156.45883 * 14 12 2 16 16 O 1.42099 * 106.40315 * 23.54074 * 14 12 2 17 17 C 1.76197 * 107.21830 * 270.00102 * 14 12 2 18 18 C 1.38187 * 120.39644 * 90.00052 * 17 14 12 19 19 N 1.31886 * 120.80670 * 179.72123 * 18 17 14 20 20 C 1.31958 * 121.71911 * 0.27845 * 19 18 17 21 21 Cl 1.73601 * 119.64298 * 179.97438 * 20 19 18 22 22 C 1.38476 * 120.71533 * 359.97438 * 20 19 18 23 23 Cl 1.73602 * 120.43725 * 180.02562 * 22 20 19 24 24 C 1.38659 * 120.39806 * 270.26880 * 17 14 12 25 25 H 1.09007 * 109.47223 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47535 * 300.00135 * 1 2 3 27 27 H 1.08998 * 109.47527 * 60.00737 * 1 2 3 28 28 H 0.97001 * 119.99353 * 179.97438 * 7 6 4 29 29 H 1.08995 * 109.47136 * 269.99842 * 13 12 2 30 30 H 1.09002 * 109.47065 * 30.00598 * 13 12 2 31 31 H 1.09004 * 109.46710 * 150.00271 * 13 12 2 32 32 H 1.08002 * 119.59972 * 0.02562 * 18 17 14 33 33 H 1.07999 * 120.78275 * 0.02562 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2391 2.4828 7 7 0.9435 0.8305 2.6033 8 14 2.3213 -1.1199 4.0081 9 1 3.8063 -1.1204 4.0083 10 1 1.8259 -0.4201 5.2205 11 1 1.8259 -2.5199 4.0079 12 7 2.0183 -0.6907 -1.1961 13 6 1.6645 -2.0933 -1.4278 14 16 2.9704 0.1141 -2.2862 15 8 3.7119 -0.8790 -2.9813 16 8 3.5793 1.1829 -1.5749 17 6 1.8960 0.8533 -3.4711 18 6 1.4065 2.1299 -3.2706 19 7 0.6062 2.6931 -4.1547 20 6 0.2377 2.0657 -5.2556 21 17 -0.8185 2.8580 -6.3828 22 6 0.6844 0.7822 -5.5215 23 17 0.1956 -0.0361 -6.9724 24 6 1.5272 0.1589 -4.6132 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 0.7089 1.1616 3.4844 29 1 2.4158 -2.7377 -0.9714 30 1 0.6904 -2.3003 -0.9845 31 1 1.6239 -2.2854 -2.5000 32 1 1.6866 2.6751 -2.3813 33 1 1.8909 -0.8419 -4.7932 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081674006.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:48 Heat of formation + Delta-G solvation = -60.234407 kcal Electronic energy + Delta-G solvation = -22969.031907 eV Core-core repulsion = 19208.465975 eV Total energy + Delta-G solvation = -3760.565932 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.69139 -38.46753 -38.14163 -37.96798 -37.93311 -36.99312 -34.52030 -34.15156 -32.49385 -30.91868 -27.27789 -27.01994 -25.57591 -25.39735 -22.57509 -20.32649 -19.36866 -18.71492 -18.66147 -18.42494 -17.99538 -16.97570 -16.56459 -16.29183 -16.25844 -15.25786 -15.03602 -14.84543 -14.63727 -14.48486 -13.73762 -13.45258 -13.40932 -13.28174 -13.25227 -13.16031 -12.97499 -12.93270 -12.79413 -12.76371 -12.57918 -12.25715 -12.21236 -12.13663 -11.88294 -11.48410 -11.18464 -11.12763 -10.46449 -10.42605 -9.70507 -8.08347 -6.21152 -1.13131 -0.71365 -0.51432 0.23262 0.56174 1.47925 1.49759 1.56012 1.70909 2.09949 2.47435 2.66451 2.85686 3.09630 3.21117 3.23770 3.41136 3.76557 3.88330 4.07262 4.32962 4.69831 4.71014 4.87109 4.97776 5.03844 5.12904 5.22590 5.64000 5.70525 5.87827 5.98810 6.12247 6.31545 6.85760 7.47824 8.95558 Molecular weight = 338.00amu Principal moments of inertia in cm(-1) A = 0.020026 B = 0.003643 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.852146 B = 7683.370935 C = 8155.606577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.269 3.731 3 H 0.037 0.963 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.021 3.979 7 N -0.912 5.912 8 Si 0.952 3.048 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.268 1.268 12 N -0.982 5.982 13 C 0.094 3.906 14 S 2.703 3.297 15 O -0.967 6.967 16 O -0.976 6.976 17 C -0.718 4.718 18 C 0.220 3.780 19 N -0.487 5.487 20 C 0.219 3.781 21 Cl 0.014 6.986 22 C -0.101 4.101 23 Cl -0.006 7.006 24 C 0.051 3.949 25 H 0.045 0.955 26 H 0.068 0.932 27 H 0.029 0.971 28 H 0.264 0.736 29 H 0.052 0.948 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.192 0.808 33 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.571 -1.880 -17.524 17.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.165 3.835 3 H 0.055 0.945 4 C -0.575 4.575 5 H 0.079 0.921 6 C -0.179 4.179 7 N -0.551 5.551 8 Si 0.778 3.222 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.193 1.193 12 N -0.822 5.822 13 C -0.051 4.051 14 S 2.791 3.209 15 O -0.957 6.957 16 O -0.966 6.966 17 C -0.805 4.805 18 C 0.062 3.938 19 N -0.198 5.198 20 C 0.054 3.946 21 Cl 0.043 6.957 22 C -0.132 4.132 23 Cl 0.023 6.977 24 C 0.024 3.976 25 H 0.064 0.936 26 H 0.087 0.913 27 H 0.048 0.952 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.209 0.791 33 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -3.233 -0.864 -17.512 17.829 hybrid contribution -0.262 -0.639 0.440 0.819 sum -3.495 -1.503 -17.072 17.491 Atomic orbital electron populations 1.21962 0.97108 1.00424 1.00378 1.18545 0.92052 0.92010 0.80900 0.94497 1.21584 1.31733 1.13170 0.91059 0.92060 1.25575 0.95202 0.95651 1.01493 1.69955 1.37183 1.23603 1.24404 0.85708 0.78560 0.79006 0.78947 1.20336 1.21106 1.19261 1.57324 1.70402 1.20877 1.33618 1.21522 1.02292 0.79694 1.01554 1.01695 0.73781 0.72996 0.72468 1.93527 1.68277 1.58989 1.74937 1.93565 1.74043 1.57102 1.71879 1.32372 1.23204 1.08129 1.16754 1.22805 0.85462 0.89851 0.95711 1.67403 1.13768 1.36574 1.02086 1.22150 0.92231 0.88958 0.91251 1.98450 1.61461 1.80272 1.55513 1.21658 1.03334 0.93776 0.94411 1.98417 1.89923 1.77250 1.32071 1.21584 0.87839 1.00423 0.87715 0.93581 0.91283 0.95195 0.92670 0.92898 0.90202 0.89473 0.79097 0.78781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.83 8.95 71.98 0.64 -5.18 16 2 C 0.27 12.09 2.62 44.24 0.12 12.21 16 3 H 0.04 1.85 6.91 -2.39 -0.02 1.84 16 4 C -0.54 -27.07 8.37 25.60 0.21 -26.86 16 5 H 0.06 3.05 7.65 -2.91 -0.02 3.03 16 6 C 0.02 1.08 5.30 84.66 0.45 1.53 16 7 N -0.91 -48.97 11.32 21.45 0.24 -48.73 16 8 Si 0.95 41.41 29.54 68.60 2.03 43.44 16 9 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 10 H -0.29 -12.28 7.11 99.48 0.71 -11.58 16 11 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 12 N -0.98 -35.72 3.06 -520.45 -1.59 -37.32 16 13 C 0.09 2.78 9.53 127.77 1.22 4.00 16 14 S 2.70 92.04 5.65 -56.49 -0.32 91.72 16 15 O -0.97 -33.05 16.44 -128.00 -2.10 -35.16 16 16 O -0.98 -40.40 15.87 -128.00 -2.03 -42.43 16 17 C -0.72 -19.96 5.99 22.36 0.13 -19.82 16 18 C 0.22 6.34 10.68 84.67 0.90 7.24 16 19 N -0.49 -13.74 10.34 -186.60 -1.93 -15.67 16 20 C 0.22 5.43 7.28 84.73 0.62 6.05 16 21 Cl 0.01 0.29 28.13 -2.72 -0.08 0.22 16 22 C -0.10 -2.24 6.35 22.44 0.14 -2.09 16 23 Cl -0.01 -0.10 28.00 -2.72 -0.08 -0.18 16 24 C 0.05 1.17 9.45 22.48 0.21 1.38 16 25 H 0.05 1.79 6.66 -2.38 -0.02 1.78 16 26 H 0.07 3.30 6.07 -2.39 -0.01 3.29 16 27 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.26 13.62 8.31 -92.71 -0.77 12.85 16 29 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.08 2.29 6.43 -2.39 -0.02 2.28 16 31 H 0.09 1.89 7.79 -2.38 -0.02 1.88 16 32 H 0.19 5.40 7.63 -2.91 -0.02 5.38 16 33 H 0.20 3.40 7.71 -2.91 -0.02 3.37 16 Total: -1.00 -60.73 325.63 -0.05 -60.78 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: 1.16 Total: 4.88 kcal Atomic # 6 Polarization: -26.20 SS G_CDS: 4.65 Total: -21.55 kcal Atomic # 7 Polarization: -98.44 SS G_CDS: -3.28 Total: -101.72 kcal Atomic # 8 Polarization: -73.45 SS G_CDS: -4.14 Total: -77.59 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Atomic # 16 Polarization: 92.04 SS G_CDS: -0.32 Total: 91.72 kcal Atomic # 17 Polarization: 0.19 SS G_CDS: -0.15 Total: 0.04 kcal Total: -60.73 -0.05 -60.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081674006.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.546 kcal (2) G-P(sol) polarization free energy of solvation -60.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds