Wall clock time and date at job start Tue Mar 31 2020 20:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47541 * 2 1 4 4 N 1.46494 * 109.47487 * 180.02562 * 3 2 1 5 5 C 1.36937 * 120.00215 * 84.99696 * 4 3 2 6 6 H 1.07996 * 120.00427 * 208.00665 * 5 4 3 7 7 C 1.38816 * 119.99730 * 27.73546 * 5 4 3 8 8 N 1.31615 * 119.99906 * 211.03724 * 7 5 4 9 9 Si 1.86800 * 119.99763 * 31.03493 * 7 5 4 10 10 H 1.48499 * 109.47365 * 358.12622 * 9 7 5 11 11 H 1.48500 * 109.47059 * 118.13196 * 9 7 5 12 12 H 1.48505 * 109.47032 * 238.12503 * 9 7 5 13 13 S 1.65600 * 119.99948 * 265.00248 * 4 3 2 14 14 O 1.42103 * 106.40212 * 17.25706 * 13 4 3 15 15 O 1.42104 * 106.40191 * 150.17752 * 13 4 3 16 16 C 1.76196 * 107.21749 * 263.71786 * 13 4 3 17 17 C 1.38192 * 120.40106 * 93.13381 * 16 13 4 18 18 N 1.31874 * 120.80693 * 179.97438 * 17 16 13 19 19 C 1.31958 * 121.72721 * 0.02562 * 18 17 16 20 20 Cl 1.73603 * 119.64800 * 179.97438 * 19 18 17 21 21 C 1.38475 * 120.71195 * 359.97438 * 19 18 17 22 22 Cl 1.73603 * 120.43982 * 179.97438 * 21 19 18 23 23 C 1.38657 * 120.39690 * 272.85531 * 16 13 4 24 24 H 1.08996 * 109.46921 * 59.99635 * 1 2 3 25 25 H 1.09000 * 109.47247 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46869 * 299.99977 * 1 2 3 27 27 H 1.09006 * 109.46977 * 239.99994 * 2 1 3 28 28 H 1.08996 * 109.46921 * 120.00365 * 2 1 3 29 29 H 1.09006 * 109.46990 * 60.00002 * 3 2 1 30 30 H 1.09005 * 109.47158 * 300.00292 * 3 2 1 31 31 H 0.96997 * 119.99947 * 359.97438 * 8 7 5 32 32 H 1.07993 * 119.59306 * 359.97438 * 17 16 13 33 33 H 1.08004 * 120.78402 * 359.97438 * 23 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1893 1.3392 -1.1823 6 1 5.1744 0.8969 -1.1991 7 6 3.6143 1.7979 -2.3596 8 7 3.9019 1.2139 -3.5035 9 14 2.4325 3.2440 -2.3201 10 1 2.2424 3.6898 -0.9165 11 1 2.9907 4.3614 -3.1232 12 1 1.1249 2.8302 -2.8895 13 16 4.3337 1.5671 1.4277 14 8 3.4073 1.2511 2.4579 15 8 5.5584 0.8705 1.2433 16 6 4.7540 3.2649 1.6403 17 6 3.9259 4.1057 2.3594 18 7 4.2330 5.3776 2.5239 19 6 5.3332 5.8975 2.0135 20 17 5.6842 7.5793 2.2629 21 6 6.2109 5.1160 1.2811 22 17 7.6561 5.8074 0.6123 23 6 5.9226 3.7722 1.0929 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6768 1.9563 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 4.5158 0.4632 -3.5239 32 1 3.0162 3.7163 2.7920 33 1 6.5908 3.1370 0.5304 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092367409.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:06 Heat of formation + Delta-G solvation = -61.985135 kcal Electronic energy + Delta-G solvation = -23284.452078 eV Core-core repulsion = 19523.810228 eV Total energy + Delta-G solvation = -3760.641849 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.50703 -38.46164 -38.08330 -37.96513 -37.85823 -36.49579 -34.75818 -33.93745 -33.15229 -32.30216 -27.52555 -25.57793 -25.34768 -25.14600 -22.71770 -20.48946 -19.81850 -19.06227 -18.54353 -18.45808 -17.91545 -17.23074 -16.47885 -16.24986 -16.00915 -15.52020 -15.39507 -14.91892 -14.66824 -14.40720 -14.29278 -13.65489 -13.40314 -13.15538 -13.09624 -12.93575 -12.83856 -12.79021 -12.53071 -12.49631 -12.39212 -12.28714 -12.15620 -11.94599 -11.71761 -11.41609 -11.28170 -11.02746 -10.87490 -10.34522 -10.16153 -9.15280 -6.11492 -0.91735 -0.41448 -0.30122 0.29650 0.61720 1.38426 1.50362 1.60475 1.90435 2.21589 2.33506 2.74322 2.96690 3.04799 3.31761 3.46011 3.61837 3.95166 3.99769 4.14012 4.19344 4.41085 4.51652 4.56736 4.68862 4.86882 4.94597 5.11760 5.26876 5.37283 5.54480 5.65453 6.09090 6.18349 6.40605 7.05686 8.19399 Molecular weight = 338.00amu Principal moments of inertia in cm(-1) A = 0.013873 B = 0.005044 C = 0.004672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.870197 B = 5549.291409 C = 5991.171566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.113 3.887 4 N -0.812 5.812 5 C -0.326 4.326 6 H 0.089 0.911 7 C 0.011 3.989 8 N -0.834 5.834 9 Si 1.055 2.945 10 H -0.252 1.252 11 H -0.286 1.286 12 H -0.251 1.251 13 S 2.527 3.473 14 O -1.000 7.000 15 O -1.002 7.002 16 C -0.710 4.710 17 C 0.201 3.799 18 N -0.484 5.484 19 C 0.204 3.796 20 Cl 0.009 6.991 21 C -0.102 4.102 22 Cl -0.018 7.018 23 C 0.033 3.967 24 H 0.060 0.940 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.097 0.903 30 H 0.057 0.943 31 H 0.282 0.718 32 H 0.202 0.798 33 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.303 7.529 5.383 9.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C -0.012 4.012 4 N -0.635 5.635 5 C -0.477 4.477 6 H 0.107 0.893 7 C -0.205 4.205 8 N -0.467 5.467 9 Si 0.876 3.124 10 H -0.177 1.177 11 H -0.214 1.214 12 H -0.176 1.176 13 S 2.629 3.371 14 O -0.989 6.989 15 O -0.992 6.992 16 C -0.789 4.789 17 C 0.043 3.957 18 N -0.196 5.196 19 C 0.039 3.961 20 Cl 0.038 6.962 21 C -0.132 4.132 22 Cl 0.011 6.989 23 C 0.006 3.994 24 H 0.079 0.921 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.115 0.885 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.218 0.782 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -3.368 8.647 5.826 10.957 hybrid contribution 2.418 -0.674 0.099 2.512 sum -0.950 7.974 5.925 9.979 Atomic orbital electron populations 1.21724 0.92967 1.02968 1.02691 1.21840 0.97634 0.95891 1.02031 1.21740 0.78569 0.98752 1.02108 1.54376 1.12627 1.75450 1.21096 1.20561 1.05905 1.36971 0.84313 0.89350 1.27503 1.01207 1.01098 0.90740 1.70933 1.28609 1.19353 1.27814 0.83952 0.76420 0.74119 0.77861 1.17675 1.21363 1.17569 1.11988 0.73302 0.76339 0.75465 1.93331 1.62382 1.84356 1.58871 1.93346 1.47062 1.72401 1.86432 1.33470 1.03256 1.33452 1.08721 1.22839 0.97700 0.86046 0.89099 1.67323 1.16184 1.14844 1.21248 1.21915 0.91095 0.89353 0.93773 1.98419 1.93104 1.09697 1.95019 1.21746 0.93390 0.94552 1.03561 1.98386 1.33336 1.83728 1.83452 1.21390 0.94031 0.92593 0.91396 0.92077 0.91184 0.91237 0.92383 0.92359 0.88489 0.92472 0.90695 0.78163 0.81769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 9.91 71.98 0.71 -2.87 16 2 C -0.13 -4.41 6.23 30.59 0.19 -4.22 16 3 C 0.11 4.02 3.98 86.38 0.34 4.36 16 4 N -0.81 -33.60 2.62 -343.46 -0.90 -34.50 16 5 C -0.33 -14.94 9.52 84.03 0.80 -14.14 16 6 H 0.09 4.46 7.51 -2.91 -0.02 4.44 16 7 C 0.01 0.49 5.23 84.86 0.44 0.93 16 8 N -0.83 -40.34 13.71 21.65 0.30 -40.04 16 9 Si 1.05 40.01 25.65 68.60 1.76 41.77 16 10 H -0.25 -8.65 6.30 99.48 0.63 -8.02 16 11 H -0.29 -11.07 7.11 99.48 0.71 -10.36 16 12 H -0.25 -8.79 7.11 99.48 0.71 -8.08 16 13 S 2.53 104.98 5.62 -56.49 -0.32 104.66 16 14 O -1.00 -41.71 16.00 -128.00 -2.05 -43.75 16 15 O -1.00 -48.00 16.41 -128.00 -2.10 -50.10 16 16 C -0.71 -26.11 5.99 22.36 0.13 -25.98 16 17 C 0.20 6.67 10.69 84.68 0.90 7.57 16 18 N -0.48 -15.87 10.34 -186.61 -1.93 -17.80 16 19 C 0.20 6.39 7.28 84.73 0.62 7.01 16 20 Cl 0.01 0.22 28.13 -2.72 -0.08 0.15 16 21 C -0.10 -3.25 6.35 22.44 0.14 -3.11 16 22 Cl -0.02 -0.49 28.00 -2.72 -0.08 -0.57 16 23 C 0.03 1.17 9.45 22.48 0.21 1.38 16 24 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 26 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 28 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.10 2.99 7.44 -2.38 -0.02 2.97 16 30 H 0.06 1.98 2.86 -2.38 -0.01 1.98 16 31 H 0.28 13.62 8.73 -92.71 -0.81 12.81 16 32 H 0.20 5.68 7.56 -2.91 -0.02 5.66 16 33 H 0.16 5.76 7.77 -2.91 -0.02 5.73 16 Total: -1.00 -53.86 324.16 0.15 -53.71 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: 1.04 Total: 15.52 kcal Atomic # 6 Polarization: -33.56 SS G_CDS: 4.50 Total: -29.05 kcal Atomic # 7 Polarization: -89.81 SS G_CDS: -2.53 Total: -92.34 kcal Atomic # 8 Polarization: -89.71 SS G_CDS: -4.15 Total: -93.85 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 1.76 Total: 41.77 kcal Atomic # 16 Polarization: 104.98 SS G_CDS: -0.32 Total: 104.66 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -0.15 Total: -0.42 kcal Total: -53.86 0.15 -53.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092367409.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.277 kcal (2) G-P(sol) polarization free energy of solvation -53.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds