Wall clock time and date at job start Tue Mar 31 2020 20:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36940 * 120.00170 * 2 1 4 4 H 1.07994 * 120.00518 * 202.09282 * 3 2 1 5 5 C 1.38820 * 119.99544 * 22.09890 * 3 2 1 6 6 N 1.31612 * 120.00246 * 11.22351 * 5 3 2 7 7 Si 1.86797 * 119.99670 * 191.22518 * 5 3 2 8 8 H 1.48497 * 109.47297 * 60.00060 * 7 5 3 9 9 H 1.48503 * 109.47173 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47345 * 299.99882 * 7 5 3 11 11 C 1.46503 * 120.00118 * 180.02562 * 2 1 3 12 12 N 1.46504 * 109.46668 * 269.99442 * 11 2 1 13 13 C 1.39295 * 124.29010 * 90.00006 * 12 11 2 14 14 C 1.38847 * 131.37686 * 0.28023 * 13 12 11 15 15 C 1.38272 * 120.23169 * 179.67200 * 14 13 12 16 16 C 1.38437 * 120.71268 * 0.04973 * 15 14 13 17 17 C 1.38164 * 120.05922 * 359.95318 * 16 15 14 18 18 Br 1.89099 * 120.16564 * 180.02562 * 17 16 15 19 19 C 1.39587 * 119.66910 * 0.02562 * 17 16 15 20 20 C 1.47388 * 133.07189 * 180.02562 * 19 17 16 21 21 O 1.21365 * 127.57964 * 0.02562 * 20 19 17 22 22 C 1.34431 * 124.28584 * 270.44498 * 12 11 2 23 23 O 1.21312 * 126.23857 * 359.73282 * 22 12 11 24 24 H 1.09005 * 109.46900 * 274.65119 * 1 2 3 25 25 H 1.08997 * 109.47799 * 34.64398 * 1 2 3 26 26 H 1.08995 * 109.47584 * 154.65337 * 1 2 3 27 27 H 0.96995 * 120.00432 * 179.97438 * 6 5 3 28 28 H 1.09001 * 109.47239 * 149.99715 * 11 2 1 29 29 H 1.08996 * 109.46987 * 29.99050 * 11 2 1 30 30 H 1.07994 * 119.88537 * 359.67862 * 14 13 12 31 31 H 1.08002 * 119.64872 * 180.02562 * 15 14 13 32 32 H 1.08001 * 119.97010 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1701 1.2203 -0.3517 5 6 1.5320 2.3439 0.4523 6 7 0.3789 2.2716 1.0825 7 14 2.3376 4.0048 0.1664 8 1 2.5006 4.2314 -1.2921 9 1 1.4829 5.0750 0.7405 10 1 3.6693 4.0287 0.8229 11 6 2.1975 -1.2687 -0.0006 12 7 2.4417 -1.6921 1.3805 13 6 1.5759 -2.4943 2.1202 14 6 0.3560 -3.0718 1.7943 15 6 -0.3174 -3.8462 2.7210 16 6 0.2103 -4.0568 3.9834 17 6 1.4227 -3.4920 4.3298 18 35 2.1466 -3.7783 6.0531 19 6 2.1106 -2.7090 3.4012 20 6 3.3919 -1.9823 3.4502 21 8 4.1685 -1.9130 4.3803 22 6 3.5258 -1.3485 2.0974 23 8 4.4468 -0.6563 1.7178 24 1 -0.3633 0.0833 1.0243 25 1 -0.3634 0.8454 -0.5842 26 1 -0.3634 -0.9287 -0.4399 27 1 -0.0526 3.0807 1.3989 28 1 3.1499 -1.1382 -0.5144 29 1 1.6083 -2.0282 -0.5146 30 1 -0.0683 -2.9157 0.8136 31 1 -1.2655 -4.2912 2.4574 32 1 -0.3261 -4.6634 4.6981 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101536537.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:31 Heat of formation + Delta-G solvation = 20.813816 kcal Electronic energy + Delta-G solvation = -21311.198766 eV Core-core repulsion = 17899.399641 eV Total energy + Delta-G solvation = -3411.799125 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.45074 -38.44302 -38.02166 -36.17132 -35.05711 -32.39924 -31.66718 -29.98316 -29.18048 -27.12017 -26.18022 -24.97303 -22.39570 -21.77558 -21.33717 -19.60669 -17.49279 -17.09556 -16.82634 -16.10310 -15.93736 -15.19675 -14.73767 -14.52549 -14.35084 -13.96185 -13.89751 -13.41205 -13.24126 -12.96685 -12.45441 -12.20318 -11.75518 -11.52698 -11.34103 -11.19169 -10.99414 -10.88171 -10.67808 -10.28726 -10.25508 -10.22520 -9.96200 -9.16217 -8.94089 -8.77406 -7.88377 -7.24419 -5.99329 -3.48535 0.21101 1.06271 1.51288 1.91076 2.88741 3.32949 3.35723 3.37900 3.45060 3.58718 3.78663 4.33588 4.57507 4.76282 4.92058 5.08618 5.23149 5.26803 5.33440 5.37231 5.58411 5.83814 5.95362 6.07975 6.20788 6.40399 6.43087 6.74362 7.07426 7.16410 7.32078 7.46174 7.64937 8.07839 8.16404 8.93740 9.51026 9.94850 11.04188 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.017892 B = 0.004356 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.597238 B = 6426.471666 C = 6960.876085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.153 3.847 2 N -0.569 5.569 3 C -0.272 4.272 4 H 0.079 0.921 5 C 0.014 3.986 6 N -0.899 5.899 7 Si 0.912 3.088 8 H -0.279 1.279 9 H -0.288 1.288 10 H -0.278 1.278 11 C 0.334 3.666 12 N -0.546 5.546 13 C 0.232 3.768 14 C -0.142 4.142 15 C -0.039 4.039 16 C -0.148 4.148 17 C 0.016 3.984 18 Br -0.038 7.038 19 C -0.236 4.236 20 C 0.382 3.618 21 O -0.373 6.373 22 C 0.494 3.506 23 O -0.442 6.442 24 H 0.037 0.963 25 H 0.054 0.946 26 H 0.003 0.997 27 H 0.258 0.742 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.138 0.862 31 H 0.141 0.859 32 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.690 -16.226 4.601 17.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.288 5.288 3 C -0.401 4.401 4 H 0.097 0.903 5 C -0.187 4.187 6 N -0.541 5.541 7 Si 0.740 3.260 8 H -0.205 1.205 9 H -0.214 1.214 10 H -0.204 1.204 11 C 0.127 3.873 12 N -0.276 5.276 13 C 0.130 3.870 14 C -0.164 4.164 15 C -0.059 4.059 16 C -0.169 4.169 17 C -0.065 4.065 18 Br 0.048 6.952 19 C -0.243 4.243 20 C 0.251 3.749 21 O -0.242 6.242 22 C 0.276 3.724 23 O -0.312 6.312 24 H 0.055 0.945 25 H 0.073 0.927 26 H 0.022 0.978 27 H 0.068 0.932 28 H 0.105 0.895 29 H 0.095 0.905 30 H 0.156 0.844 31 H 0.159 0.841 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.524 -15.558 5.375 16.653 hybrid contribution -0.039 1.141 -0.289 1.177 sum -2.563 -14.418 5.087 15.502 Atomic orbital electron populations 1.21025 0.81626 0.96303 1.00168 1.44909 1.02879 1.01284 1.79763 1.19321 0.98480 0.84505 1.37810 0.90322 1.25148 0.97243 0.99221 0.97044 1.70043 1.17253 1.28023 1.38792 0.86219 0.78926 0.82629 0.78202 1.20537 1.21368 1.20392 1.21961 0.97717 0.87814 0.79760 1.49182 1.17729 1.44351 1.16297 1.18721 0.91071 0.88096 0.89061 1.20501 0.93352 1.00749 1.01802 1.21127 0.98602 0.94427 0.91744 1.20934 0.94716 1.03287 0.97992 1.21350 0.95771 0.98211 0.91176 1.96753 1.85248 1.95316 1.17842 1.20277 1.00405 1.07763 0.95877 1.22812 0.84709 0.78769 0.88602 1.90554 1.45570 1.50435 1.37654 1.21013 0.82965 0.81155 0.87224 1.90748 1.33147 1.32486 1.74782 0.94505 0.92690 0.97822 0.93152 0.89483 0.90541 0.84393 0.84076 0.84300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 3.31 9.01 59.84 0.54 3.85 16 2 N -0.57 -13.05 3.17 -184.86 -0.59 -13.64 16 3 C -0.27 -7.17 9.68 -15.05 -0.15 -7.32 16 4 H 0.08 2.11 7.84 -52.49 -0.41 1.70 16 5 C 0.01 0.38 5.14 -17.43 -0.09 0.29 16 6 N -0.90 -24.99 10.56 55.49 0.59 -24.40 16 7 Si 0.91 21.72 29.57 -169.99 -5.03 16.69 16 8 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 9 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 C 0.33 6.21 6.35 -63.74 -0.40 5.80 16 12 N -0.55 -10.24 2.98 -117.01 -0.35 -10.59 16 13 C 0.23 3.76 6.73 -83.40 -0.56 3.20 16 14 C -0.14 -1.80 9.77 -39.34 -0.38 -2.19 16 15 C -0.04 -0.40 10.01 -39.50 -0.40 -0.79 16 16 C -0.15 -1.64 9.79 -39.54 -0.39 -2.03 16 17 C 0.02 0.22 6.26 -39.11 -0.24 -0.02 16 18 Br -0.04 -0.52 32.96 -68.01 -2.24 -2.76 16 19 C -0.24 -3.94 6.18 -104.83 -0.65 -4.59 16 20 C 0.38 7.40 7.87 -30.93 -0.24 7.16 16 21 O -0.37 -7.62 17.34 5.48 0.10 -7.53 16 22 C 0.49 10.38 8.16 -11.49 -0.09 10.29 16 23 O -0.44 -10.58 17.70 5.53 0.10 -10.49 16 24 H 0.04 0.88 7.40 -51.93 -0.38 0.50 16 25 H 0.05 1.31 7.20 -51.93 -0.37 0.93 16 26 H 0.00 0.06 7.72 -51.93 -0.40 -0.34 16 27 H 0.26 7.02 8.31 -40.82 -0.34 6.69 16 28 H 0.09 1.64 7.87 -51.93 -0.41 1.23 16 29 H 0.08 1.13 7.43 -51.93 -0.39 0.74 16 30 H 0.14 1.54 7.65 -52.49 -0.40 1.14 16 31 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 308.07 15.07 4.64 4.64 Total: -1.00 -30.91 308.07 -8.59 -39.50 By element: Atomic # 1 Polarization: -2.33 SS G_CDS: -2.75 Total: -5.08 kcal Atomic # 6 Polarization: 16.71 SS G_CDS: -3.06 Total: 13.65 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: -0.35 Total: -48.63 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: 0.19 Total: -18.02 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Atomic # 35 Polarization: -0.52 SS G_CDS: -2.24 Total: -2.76 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.91 -8.59 -39.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101536537.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.312 kcal (2) G-P(sol) polarization free energy of solvation -30.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds