Wall clock time and date at job start Tue Mar 31 2020 20:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36940 * 120.00170 * 2 1 4 4 H 1.07994 * 120.00518 * 202.09282 * 3 2 1 5 5 C 1.38820 * 119.99544 * 22.09890 * 3 2 1 6 6 N 1.31612 * 120.00246 * 11.22351 * 5 3 2 7 7 Si 1.86797 * 119.99670 * 191.22518 * 5 3 2 8 8 H 1.48497 * 109.47297 * 60.00060 * 7 5 3 9 9 H 1.48503 * 109.47173 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47345 * 299.99882 * 7 5 3 11 11 C 1.46503 * 120.00118 * 180.02562 * 2 1 3 12 12 N 1.46504 * 109.46668 * 269.99442 * 11 2 1 13 13 C 1.39295 * 124.29010 * 90.00006 * 12 11 2 14 14 C 1.38847 * 131.37686 * 0.28023 * 13 12 11 15 15 C 1.38272 * 120.23169 * 179.67200 * 14 13 12 16 16 C 1.38437 * 120.71268 * 0.04973 * 15 14 13 17 17 C 1.38164 * 120.05922 * 359.95318 * 16 15 14 18 18 Br 1.89099 * 120.16564 * 180.02562 * 17 16 15 19 19 C 1.39587 * 119.66910 * 0.02562 * 17 16 15 20 20 C 1.47388 * 133.07189 * 180.02562 * 19 17 16 21 21 O 1.21365 * 127.57964 * 0.02562 * 20 19 17 22 22 C 1.34431 * 124.28584 * 270.44498 * 12 11 2 23 23 O 1.21312 * 126.23857 * 359.73282 * 22 12 11 24 24 H 1.09005 * 109.46900 * 274.65119 * 1 2 3 25 25 H 1.08997 * 109.47799 * 34.64398 * 1 2 3 26 26 H 1.08995 * 109.47584 * 154.65337 * 1 2 3 27 27 H 0.96995 * 120.00432 * 179.97438 * 6 5 3 28 28 H 1.09001 * 109.47239 * 149.99715 * 11 2 1 29 29 H 1.08996 * 109.46987 * 29.99050 * 11 2 1 30 30 H 1.07994 * 119.88537 * 359.67862 * 14 13 12 31 31 H 1.08002 * 119.64872 * 180.02562 * 15 14 13 32 32 H 1.08001 * 119.97010 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1701 1.2203 -0.3517 5 6 1.5320 2.3439 0.4523 6 7 0.3789 2.2716 1.0825 7 14 2.3376 4.0048 0.1664 8 1 2.5006 4.2314 -1.2921 9 1 1.4829 5.0750 0.7405 10 1 3.6693 4.0287 0.8229 11 6 2.1975 -1.2687 -0.0006 12 7 2.4417 -1.6921 1.3805 13 6 1.5759 -2.4943 2.1202 14 6 0.3560 -3.0718 1.7943 15 6 -0.3174 -3.8462 2.7210 16 6 0.2103 -4.0568 3.9834 17 6 1.4227 -3.4920 4.3298 18 35 2.1466 -3.7783 6.0531 19 6 2.1106 -2.7090 3.4012 20 6 3.3919 -1.9823 3.4502 21 8 4.1685 -1.9130 4.3803 22 6 3.5258 -1.3485 2.0974 23 8 4.4468 -0.6563 1.7178 24 1 -0.3633 0.0833 1.0243 25 1 -0.3634 0.8454 -0.5842 26 1 -0.3634 -0.9287 -0.4399 27 1 -0.0526 3.0807 1.3989 28 1 3.1499 -1.1382 -0.5144 29 1 1.6083 -2.0282 -0.5146 30 1 -0.0683 -2.9157 0.8136 31 1 -1.2655 -4.2912 2.4574 32 1 -0.3261 -4.6634 4.6981 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000101536537.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:31 Heat of formation + Delta-G solvation = 1.956230 kcal Electronic energy + Delta-G solvation = -21312.016492 eV Core-core repulsion = 17899.399641 eV Total energy + Delta-G solvation = -3412.616851 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.85088 -39.77250 -39.56019 -37.78065 -36.61847 -33.64355 -33.29145 -31.42286 -30.27084 -28.51727 -28.00720 -26.49792 -23.76558 -23.15199 -22.78329 -21.02235 -19.09096 -18.51304 -18.38877 -17.53669 -17.45270 -16.89197 -16.26703 -15.78162 -15.66617 -15.59018 -15.22827 -14.96713 -14.79929 -14.25688 -14.06773 -13.34632 -13.26338 -13.18633 -12.97164 -12.71200 -12.54009 -12.38441 -12.25103 -12.08507 -11.99798 -11.37733 -11.26834 -10.83039 -10.58820 -10.02618 -9.19524 -9.07469 -7.98918 -5.49460 -1.13214 -0.02493 0.45118 0.68431 1.35237 1.40539 1.46900 1.50276 1.88786 2.38594 2.41932 2.56944 3.21027 3.26422 3.57338 3.65550 3.89418 4.06645 4.20685 4.27679 4.40579 4.55776 4.76597 4.88061 5.02982 5.21551 5.24862 5.33640 5.54745 5.56145 5.68990 5.74350 5.93983 6.18967 6.60369 7.01293 7.64847 8.02474 9.01584 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.017892 B = 0.004356 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.597238 B = 6426.471666 C = 6960.876085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.169 3.831 2 N -0.590 5.590 3 C -0.272 4.272 4 H 0.063 0.937 5 C -0.036 4.036 6 N -0.923 5.923 7 Si 0.959 3.041 8 H -0.268 1.268 9 H -0.287 1.287 10 H -0.291 1.291 11 C 0.338 3.662 12 N -0.544 5.544 13 C 0.206 3.794 14 C -0.134 4.134 15 C -0.014 4.014 16 C -0.128 4.128 17 C 0.002 3.998 18 Br -0.039 7.039 19 C -0.255 4.255 20 C 0.379 3.621 21 O -0.398 6.398 22 C 0.481 3.519 23 O -0.492 6.492 24 H 0.008 0.992 25 H 0.024 0.976 26 H 0.055 0.945 27 H 0.252 0.748 28 H 0.076 0.924 29 H 0.128 0.872 30 H 0.162 0.838 31 H 0.196 0.804 32 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.482 -19.117 4.357 20.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.311 5.311 3 C -0.403 4.403 4 H 0.081 0.919 5 C -0.233 4.233 6 N -0.568 5.568 7 Si 0.787 3.213 8 H -0.194 1.194 9 H -0.213 1.213 10 H -0.218 1.218 11 C 0.133 3.867 12 N -0.273 5.273 13 C 0.106 3.894 14 C -0.155 4.155 15 C -0.033 4.033 16 C -0.149 4.149 17 C -0.079 4.079 18 Br 0.047 6.953 19 C -0.261 4.261 20 C 0.251 3.749 21 O -0.269 6.269 22 C 0.264 3.736 23 O -0.366 6.366 24 H 0.027 0.973 25 H 0.043 0.957 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.094 0.906 29 H 0.145 0.855 30 H 0.180 0.820 31 H 0.213 0.787 32 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -5.347 -18.521 5.139 19.950 hybrid contribution 0.749 1.770 -0.161 1.928 sum -4.598 -16.751 4.978 18.070 Atomic orbital electron populations 1.20789 0.80834 0.97601 0.98304 1.44965 1.03481 1.01515 1.81140 1.19382 0.97881 0.86390 1.36609 0.91898 1.25703 0.98074 1.01628 0.97891 1.70165 1.18236 1.27886 1.40467 0.85483 0.77344 0.80035 0.78447 1.19352 1.21299 1.21785 1.21995 0.97920 0.87653 0.79181 1.48373 1.17787 1.44802 1.16386 1.18958 0.92390 0.89370 0.88638 1.20964 0.91465 0.99630 1.03483 1.21771 0.99515 0.91852 0.90121 1.21501 0.92865 1.01428 0.99083 1.21632 0.96890 0.98509 0.90861 1.96760 1.85702 1.95153 1.17636 1.20092 0.99367 1.09413 0.97236 1.22883 0.85885 0.78690 0.87486 1.90526 1.46743 1.51630 1.37963 1.21439 0.83038 0.80704 0.88401 1.90703 1.35022 1.34919 1.75910 0.97319 0.95742 0.92617 0.93865 0.90601 0.85458 0.82049 0.78726 0.80715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 7.05 9.01 127.77 1.15 8.20 16 2 N -0.59 -26.79 3.17 -738.77 -2.34 -29.13 16 3 C -0.27 -14.70 9.68 84.03 0.81 -13.89 16 4 H 0.06 3.51 7.84 -2.91 -0.02 3.49 16 5 C -0.04 -1.99 5.14 84.87 0.44 -1.55 16 6 N -0.92 -52.47 10.56 21.65 0.23 -52.24 16 7 Si 0.96 45.88 29.57 68.60 2.03 47.91 16 8 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 9 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 10 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 11 C 0.34 12.15 6.35 170.96 1.08 13.23 16 12 N -0.54 -20.17 2.98 -642.69 -1.91 -22.09 16 13 C 0.21 6.18 6.73 38.64 0.26 6.44 16 14 C -0.13 -2.70 9.77 22.42 0.22 -2.48 16 15 C -0.01 -0.18 10.01 22.33 0.22 0.04 16 16 C -0.13 -2.13 9.79 22.30 0.22 -1.91 16 17 C 0.00 0.04 6.26 22.58 0.14 0.19 16 18 Br -0.04 -1.00 32.96 -20.37 -0.67 -1.67 16 19 C -0.25 -8.19 6.18 -20.00 -0.12 -8.32 16 20 C 0.38 15.13 7.87 27.87 0.22 15.35 16 21 O -0.40 -16.94 17.34 -3.29 -0.06 -16.99 16 22 C 0.48 21.00 8.16 87.49 0.71 21.72 16 23 O -0.49 -25.06 17.70 -3.13 -0.06 -25.11 16 24 H 0.01 0.40 7.40 -2.38 -0.02 0.38 16 25 H 0.02 1.14 7.20 -2.39 -0.02 1.12 16 26 H 0.06 1.70 7.72 -2.39 -0.02 1.68 16 27 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 28 H 0.08 2.87 7.87 -2.39 -0.02 2.85 16 29 H 0.13 3.24 7.43 -2.39 -0.02 3.22 16 30 H 0.16 2.53 7.65 -2.91 -0.02 2.51 16 31 H 0.20 0.73 8.06 -2.91 -0.02 0.71 16 32 H 0.18 1.76 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -73.07 308.07 3.75 -69.32 By element: Atomic # 1 Polarization: -8.19 SS G_CDS: 1.17 Total: -7.02 kcal Atomic # 6 Polarization: 31.66 SS G_CDS: 5.36 Total: 37.02 kcal Atomic # 7 Polarization: -99.43 SS G_CDS: -4.02 Total: -103.46 kcal Atomic # 8 Polarization: -41.99 SS G_CDS: -0.11 Total: -42.10 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Atomic # 35 Polarization: -1.00 SS G_CDS: -0.67 Total: -1.67 kcal Total: -73.07 3.75 -69.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101536537.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.275 kcal (2) G-P(sol) polarization free energy of solvation -73.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds