Wall clock time and date at job start Tue Mar 31 2020 20:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 N 1.46495 * 109.47571 * 180.02562 * 9 7 2 11 11 C 1.34972 * 125.97661 * 124.71645 * 10 9 7 12 12 C 1.35238 * 107.86559 * 179.84001 * 11 10 9 13 13 C 1.40428 * 107.86529 * 0.42450 * 12 11 10 14 14 N 1.40082 * 125.97675 * 179.72156 * 13 12 11 15 15 C 1.34773 * 119.99837 * 359.97438 * 14 13 12 16 16 O 1.21713 * 120.00065 * 0.02562 * 15 14 13 17 17 C 1.46641 * 120.00466 * 180.02562 * 15 14 13 18 18 C 1.37896 * 126.23106 * 180.02562 * 17 15 14 19 19 C 1.39886 * 107.09319 * 180.02562 * 18 17 15 20 20 Br 1.89097 * 126.07156 * 179.97438 * 19 18 17 21 21 C 1.35499 * 107.85365 * 0.02562 * 19 18 17 22 22 N 1.35620 * 108.86193 * 359.73141 * 21 19 18 23 23 H 0.96996 * 125.68191 * 180.29575 * 22 21 19 24 24 N 1.31231 * 108.04753 * 359.73499 * 13 12 11 25 25 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 27 27 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 28 28 H 1.08002 * 126.06761 * 359.97438 * 11 10 9 29 29 H 1.07998 * 126.06616 * 180.14141 * 12 11 10 30 30 H 0.96996 * 120.00065 * 180.02562 * 14 13 12 31 31 H 1.08002 * 126.45296 * 0.02562 * 18 17 15 32 32 H 1.08004 * 125.57538 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 7 3.9999 -2.5752 -0.0181 11 6 4.8469 -3.1128 -0.9210 12 6 5.0539 -4.4044 -0.5779 13 6 4.2969 -4.6708 0.5745 14 7 4.2283 -5.8966 1.2489 15 6 4.9309 -6.9543 0.7974 16 8 5.6254 -6.8444 -0.1960 17 6 4.8588 -8.2378 1.5031 18 6 5.5204 -9.3969 1.1562 19 6 5.1656 -10.3699 2.0964 20 35 5.7691 -12.1618 2.1262 21 6 4.3119 -9.8007 2.9814 22 7 4.1218 -8.5034 2.6349 23 1 3.5588 -7.8689 3.1052 24 7 3.6647 -3.5705 0.9089 25 1 -0.4850 0.8400 0.0004 26 1 3.8711 -0.6780 -0.9023 27 1 3.8785 -0.6824 0.8776 28 1 5.2837 -2.6015 -1.7661 29 1 5.6854 -5.1077 -1.1004 30 1 3.6745 -5.9843 2.0404 31 1 6.1869 -9.5286 0.3166 32 1 3.8605 -10.2975 3.8275 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117855663.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:50 Heat of formation + Delta-G solvation = 103.279462 kcal Electronic energy + Delta-G solvation = -19622.693535 eV Core-core repulsion = 16246.763140 eV Total energy + Delta-G solvation = -3375.930395 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.78824 -40.70153 -38.99709 -35.03006 -33.41351 -32.57863 -31.41589 -30.44707 -29.56402 -29.10013 -27.17738 -24.05755 -22.49438 -21.30942 -20.64057 -20.45656 -19.74649 -18.77480 -17.12876 -16.68956 -16.11896 -15.65902 -15.45958 -14.68243 -14.48279 -14.22845 -14.09028 -13.60879 -13.26684 -13.11547 -12.96874 -12.62616 -12.45725 -12.16702 -11.41327 -11.25017 -10.94997 -10.62705 -10.50794 -10.28358 -10.07976 -9.89639 -9.60320 -9.23398 -8.82006 -8.69877 -8.30455 -7.64132 -6.28665 -4.31501 1.01917 1.43366 2.00634 2.48109 2.56276 2.73249 2.99181 3.12304 3.17264 3.20541 3.63111 3.67010 4.18100 4.47758 4.54280 4.79020 4.99002 5.16610 5.38268 5.50261 5.57069 5.98235 6.04251 6.18952 6.31649 6.36303 6.47847 6.57270 6.79728 7.16118 7.19702 7.43449 7.72337 7.99724 8.26909 8.43925 8.80155 9.25981 10.83937 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.042856 B = 0.001975 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.196147 B =14174.790648 C =14625.032822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.076 3.924 3 Si 0.875 3.125 4 H -0.272 1.272 5 H -0.265 1.265 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.085 0.915 9 C 0.231 3.769 10 N -0.317 5.317 11 C 0.054 3.946 12 C -0.281 4.281 13 C 0.259 3.741 14 N -0.629 5.629 15 C 0.596 3.404 16 O -0.500 6.500 17 C -0.036 4.036 18 C -0.073 4.073 19 C -0.183 4.183 20 Br -0.027 7.027 21 C 0.067 3.933 22 N -0.530 5.530 23 H 0.425 0.575 24 N -0.296 5.296 25 H 0.269 0.731 26 H 0.055 0.945 27 H 0.038 0.962 28 H 0.171 0.829 29 H 0.163 0.837 30 H 0.405 0.595 31 H 0.160 0.840 32 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.411 -22.511 6.645 26.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.128 4.128 3 Si 0.701 3.299 4 H -0.197 1.197 5 H -0.189 1.189 6 H -0.205 1.205 7 C -0.574 4.574 8 H 0.103 0.897 9 C 0.112 3.888 10 N -0.099 5.099 11 C -0.095 4.095 12 C -0.312 4.312 13 C 0.005 3.995 14 N -0.276 5.276 15 C 0.382 3.618 16 O -0.373 6.373 17 C -0.150 4.150 18 C -0.101 4.101 19 C -0.269 4.269 20 Br 0.057 6.943 21 C -0.073 4.073 22 N -0.127 5.127 23 H 0.264 0.736 24 N -0.126 5.126 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.056 0.944 28 H 0.188 0.812 29 H 0.181 0.819 30 H 0.240 0.760 31 H 0.178 0.822 32 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 11.042 -22.121 6.793 25.640 hybrid contribution -0.007 1.223 0.153 1.233 sum 11.035 -20.897 6.946 24.632 Atomic orbital electron populations 1.69870 1.06164 1.27366 1.49007 1.24836 0.94886 0.98836 0.94207 0.86883 0.80243 0.83772 0.79016 1.19697 1.18931 1.20539 1.21093 0.87735 0.95709 1.52871 0.89674 1.20084 0.97502 0.72853 0.98314 1.48639 1.32707 1.10164 1.18347 1.22584 0.95845 0.94627 0.96488 1.21552 1.11436 0.96894 1.01364 1.19005 0.99315 0.86310 0.94828 1.42226 1.47468 1.07741 1.30132 1.16810 0.79827 0.81217 0.83925 1.90809 1.39477 1.82540 1.24451 1.20265 1.05139 0.96013 0.93576 1.21196 1.00148 0.89179 0.99557 1.21002 1.09187 0.93343 1.03399 1.96635 1.88728 1.10093 1.98855 1.21922 1.00652 0.83818 1.00911 1.42109 1.37152 1.10939 1.22481 0.73566 1.77384 1.23557 0.95483 1.16224 0.92125 0.92769 0.94394 0.81172 0.81943 0.76028 0.82241 0.80007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.19 13.96 55.43 0.77 -25.42 16 2 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 3 Si 0.87 19.80 27.47 -169.99 -4.67 15.13 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 5 H -0.26 -5.55 6.54 56.52 0.37 -5.18 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.54 -14.83 9.79 -34.44 -0.34 -15.16 16 8 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 9 C 0.23 5.34 5.33 -5.20 -0.03 5.31 16 10 N -0.32 -6.96 3.67 -62.56 -0.23 -7.19 16 11 C 0.05 1.00 11.43 -17.24 -0.20 0.81 16 12 C -0.28 -5.27 9.60 -39.83 -0.38 -5.65 16 13 C 0.26 4.94 8.11 -154.45 -1.25 3.68 16 14 N -0.63 -9.11 5.44 -12.33 -0.07 -9.18 16 15 C 0.60 8.36 7.75 -12.87 -0.10 8.26 16 16 O -0.50 -8.47 14.00 5.18 0.07 -8.40 16 17 C -0.04 -0.39 7.05 -81.99 -0.58 -0.97 16 18 C -0.07 -0.78 10.63 -39.09 -0.42 -1.20 16 19 C -0.18 -1.65 6.53 -39.94 -0.26 -1.91 16 20 Br -0.03 -0.22 34.08 -68.01 -2.32 -2.54 16 21 C 0.07 0.46 11.86 -16.86 -0.20 0.26 16 22 N -0.53 -3.84 6.00 -9.36 -0.06 -3.89 16 23 H 0.43 1.91 8.19 -40.82 -0.33 1.57 16 24 N -0.30 -6.52 12.42 31.43 0.39 -6.13 16 25 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 26 H 0.05 1.15 7.12 -51.93 -0.37 0.78 16 27 H 0.04 0.86 7.57 -51.93 -0.39 0.47 16 28 H 0.17 2.49 8.06 -52.49 -0.42 2.06 16 29 H 0.16 2.94 5.90 -52.49 -0.31 2.63 16 30 H 0.41 4.55 7.95 -40.82 -0.32 4.23 16 31 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 32 H 0.18 0.64 8.06 -52.48 -0.42 0.22 16 LS Contribution 308.63 15.07 4.65 4.65 Total: -1.00 -33.94 308.63 -7.89 -41.83 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -2.59 Total: 5.70 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -3.85 Total: -4.56 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: 0.81 Total: -51.81 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.07 Total: -8.40 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -4.67 Total: 15.13 kcal Atomic # 35 Polarization: -0.22 SS G_CDS: -2.32 Total: -2.54 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.94 -7.89 -41.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117855663.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.107 kcal (2) G-P(sol) polarization free energy of solvation -33.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds