Wall clock time and date at job start Tue Mar 31 2020 20:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 N 1.46495 * 109.47571 * 180.02562 * 9 7 2 11 11 C 1.34972 * 125.97661 * 124.71645 * 10 9 7 12 12 C 1.35238 * 107.86559 * 179.84001 * 11 10 9 13 13 C 1.40428 * 107.86529 * 0.42450 * 12 11 10 14 14 N 1.40082 * 125.97675 * 179.72156 * 13 12 11 15 15 C 1.34773 * 119.99837 * 359.97438 * 14 13 12 16 16 O 1.21713 * 120.00065 * 0.02562 * 15 14 13 17 17 C 1.46641 * 120.00466 * 180.02562 * 15 14 13 18 18 C 1.37896 * 126.23106 * 180.02562 * 17 15 14 19 19 C 1.39886 * 107.09319 * 180.02562 * 18 17 15 20 20 Br 1.89097 * 126.07156 * 179.97438 * 19 18 17 21 21 C 1.35499 * 107.85365 * 0.02562 * 19 18 17 22 22 N 1.35620 * 108.86193 * 359.73141 * 21 19 18 23 23 H 0.96996 * 125.68191 * 180.29575 * 22 21 19 24 24 N 1.31231 * 108.04753 * 359.73499 * 13 12 11 25 25 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 27 27 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 28 28 H 1.08002 * 126.06761 * 359.97438 * 11 10 9 29 29 H 1.07998 * 126.06616 * 180.14141 * 12 11 10 30 30 H 0.96996 * 120.00065 * 180.02562 * 14 13 12 31 31 H 1.08002 * 126.45296 * 0.02562 * 18 17 15 32 32 H 1.08004 * 125.57538 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 7 3.9999 -2.5752 -0.0181 11 6 4.8469 -3.1128 -0.9210 12 6 5.0539 -4.4044 -0.5779 13 6 4.2969 -4.6708 0.5745 14 7 4.2283 -5.8966 1.2489 15 6 4.9309 -6.9543 0.7974 16 8 5.6254 -6.8444 -0.1960 17 6 4.8588 -8.2378 1.5031 18 6 5.5204 -9.3969 1.1562 19 6 5.1656 -10.3699 2.0964 20 35 5.7691 -12.1618 2.1262 21 6 4.3119 -9.8007 2.9814 22 7 4.1218 -8.5034 2.6349 23 1 3.5588 -7.8689 3.1052 24 7 3.6647 -3.5705 0.9089 25 1 -0.4850 0.8400 0.0004 26 1 3.8711 -0.6780 -0.9023 27 1 3.8785 -0.6824 0.8776 28 1 5.2837 -2.6015 -1.7661 29 1 5.6854 -5.1077 -1.1004 30 1 3.6745 -5.9843 2.0404 31 1 6.1869 -9.5286 0.3166 32 1 3.8605 -10.2975 3.8275 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117855663.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:49 Heat of formation + Delta-G solvation = 79.458608 kcal Electronic energy + Delta-G solvation = -19623.726485 eV Core-core repulsion = 16246.763140 eV Total energy + Delta-G solvation = -3376.963345 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.64981 -42.05991 -40.19179 -36.38813 -35.26873 -33.46375 -32.99826 -31.22769 -31.05374 -30.01897 -28.82877 -25.32344 -24.07386 -22.51905 -21.85492 -21.27284 -20.91415 -19.82440 -19.11482 -18.18925 -17.15945 -16.98341 -16.77773 -16.20355 -15.62440 -15.39365 -14.97597 -14.89048 -14.80865 -14.46487 -13.91194 -13.83176 -13.82227 -13.74747 -13.01769 -12.67684 -12.23187 -12.06137 -11.84001 -11.74994 -11.53817 -11.26145 -11.09841 -10.88610 -9.97995 -9.83674 -9.43710 -9.12123 -8.38511 -6.49000 0.12933 0.76806 1.05645 1.22819 1.33808 1.37555 1.39469 1.48754 1.77156 1.99356 2.27972 2.30498 2.34786 2.94283 3.54025 3.91026 3.99687 4.13977 4.16987 4.44081 4.56901 4.70075 4.77775 4.83617 4.86659 5.04422 5.23045 5.30881 5.47335 5.79370 5.97547 6.09425 6.28128 6.37826 6.56594 6.83564 6.96297 7.14032 8.78389 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.042856 B = 0.001975 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.196147 B =14174.790648 C =14625.032822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.014 3.986 3 Si 0.955 3.045 4 H -0.265 1.265 5 H -0.229 1.229 6 H -0.279 1.279 7 C -0.547 4.547 8 H 0.027 0.973 9 C 0.238 3.762 10 N -0.342 5.342 11 C 0.063 3.937 12 C -0.294 4.294 13 C 0.264 3.736 14 N -0.623 5.623 15 C 0.599 3.401 16 O -0.534 6.534 17 C -0.058 4.058 18 C -0.077 4.077 19 C -0.206 4.206 20 Br -0.022 7.022 21 C 0.099 3.901 22 N -0.517 5.517 23 H 0.439 0.561 24 N -0.344 5.344 25 H 0.272 0.728 26 H 0.084 0.916 27 H 0.046 0.954 28 H 0.212 0.788 29 H 0.169 0.831 30 H 0.419 0.581 31 H 0.152 0.848 32 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.986 -22.575 7.328 27.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.185 4.185 3 Si 0.776 3.224 4 H -0.190 1.190 5 H -0.152 1.152 6 H -0.204 1.204 7 C -0.585 4.585 8 H 0.045 0.955 9 C 0.119 3.881 10 N -0.124 5.124 11 C -0.085 4.085 12 C -0.324 4.324 13 C 0.010 3.990 14 N -0.271 5.271 15 C 0.388 3.612 16 O -0.409 6.409 17 C -0.171 4.171 18 C -0.105 4.105 19 C -0.291 4.291 20 Br 0.062 6.938 21 C -0.042 4.042 22 N -0.115 5.115 23 H 0.281 0.719 24 N -0.174 5.174 25 H 0.081 0.919 26 H 0.102 0.898 27 H 0.064 0.936 28 H 0.229 0.771 29 H 0.187 0.813 30 H 0.256 0.744 31 H 0.170 0.830 32 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 12.621 -22.213 7.497 26.626 hybrid contribution -0.529 0.976 -0.020 1.110 sum 12.092 -21.237 7.477 25.557 Atomic orbital electron populations 1.70046 1.08574 1.28816 1.50636 1.25919 0.95771 1.03539 0.93236 0.85626 0.79919 0.77258 0.79629 1.19027 1.15176 1.20443 1.21223 0.90484 0.93718 1.53060 0.95496 1.19927 0.94162 0.74251 0.99792 1.48533 1.34264 1.10005 1.19626 1.23270 0.94222 0.94614 0.96361 1.21772 1.11802 0.97315 1.01547 1.19368 0.97888 0.86953 0.94826 1.42291 1.47896 1.06490 1.30443 1.17218 0.78705 0.81746 0.83518 1.90772 1.40877 1.83197 1.26059 1.19692 1.07555 0.94474 0.95416 1.21293 0.99784 0.89716 0.99706 1.21130 1.10437 0.93630 1.03906 1.96641 1.88843 1.09459 1.98848 1.22571 0.98244 0.82988 1.00421 1.42093 1.36470 1.11561 1.21326 0.71907 1.77302 1.25647 0.96637 1.17849 0.91879 0.89823 0.93617 0.77117 0.81336 0.74382 0.82984 0.76012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.35 13.96 21.45 0.30 -57.05 16 2 C 0.01 0.79 5.47 84.65 0.46 1.26 16 3 Si 0.95 39.97 27.47 68.60 1.88 41.85 16 4 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 5 H -0.23 -8.23 6.54 99.48 0.65 -7.58 16 6 H -0.28 -11.56 7.11 99.48 0.71 -10.86 16 7 C -0.55 -30.99 9.79 25.60 0.25 -30.74 16 8 H 0.03 1.78 8.06 -2.91 -0.02 1.76 16 9 C 0.24 10.75 5.33 85.63 0.46 11.21 16 10 N -0.34 -14.94 3.67 -351.85 -1.29 -16.23 16 11 C 0.06 2.27 11.43 83.52 0.95 3.23 16 12 C -0.29 -10.89 9.60 22.11 0.21 -10.68 16 13 C 0.26 10.17 8.11 133.35 1.08 11.25 16 14 N -0.62 -18.06 5.44 -311.12 -1.69 -19.75 16 15 C 0.60 16.76 7.75 86.44 0.67 17.43 16 16 O -0.53 -18.29 14.00 -4.39 -0.06 -18.35 16 17 C -0.06 -1.20 7.05 40.34 0.28 -0.91 16 18 C -0.08 -1.58 10.63 22.59 0.24 -1.33 16 19 C -0.21 -3.30 6.53 22.04 0.14 -3.15 16 20 Br -0.02 -0.32 34.08 -20.37 -0.69 -1.02 16 21 C 0.10 1.04 11.86 83.47 0.99 2.03 16 22 N -0.52 -6.33 6.00 -183.54 -1.10 -7.44 16 23 H 0.44 2.91 8.19 -92.71 -0.76 2.15 16 24 N -0.34 -15.44 12.42 -54.48 -0.68 -16.12 16 25 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 26 H 0.08 3.27 7.12 -2.39 -0.02 3.26 16 27 H 0.05 1.99 7.57 -2.39 -0.02 1.97 16 28 H 0.21 5.50 8.06 -2.91 -0.02 5.48 16 29 H 0.17 6.05 5.90 -2.91 -0.02 6.03 16 30 H 0.42 9.32 7.95 -92.71 -0.74 8.58 16 31 H 0.15 3.23 8.06 -2.91 -0.02 3.21 16 32 H 0.22 0.51 8.06 -2.91 -0.02 0.49 16 Total: -1.00 -77.69 308.63 2.07 -75.63 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: -0.35 Total: 18.88 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: 5.75 Total: -0.41 kcal Atomic # 7 Polarization: -112.12 SS G_CDS: -4.46 Total: -116.58 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.06 Total: -18.35 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 1.88 Total: 41.85 kcal Atomic # 35 Polarization: -0.32 SS G_CDS: -0.69 Total: -1.02 kcal Total: -77.69 2.07 -75.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117855663.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.085 kcal (2) G-P(sol) polarization free energy of solvation -77.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds