Wall clock time and date at job start Tue Mar 31 2020 20:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39714 * 120.18805 * 53.88908 * 3 2 1 5 5 C 1.37904 * 119.89127 * 179.97438 * 4 3 2 6 6 Br 1.89100 * 119.86495 * 179.97438 * 5 4 3 7 7 C 1.38600 * 120.27467 * 359.97438 * 5 4 3 8 8 C 1.38097 * 120.37812 * 0.30038 * 7 5 4 9 9 C 1.38641 * 120.10614 * 359.44080 * 8 7 5 10 10 O 1.35719 * 120.13963 * 180.27604 * 9 8 7 11 11 C 1.42899 * 117.00187 * 0.25651 * 10 9 8 12 12 C 1.50693 * 109.47339 * 179.97438 * 11 10 9 13 13 O 1.21284 * 120.00027 * 0.02562 * 12 11 10 14 14 N 1.34783 * 120.00164 * 180.02562 * 12 11 10 15 15 C 1.46502 * 119.99778 * 180.02562 * 14 12 11 16 16 C 1.50701 * 109.46739 * 180.02562 * 15 14 12 17 17 H 1.08007 * 119.99880 * 359.97438 * 16 15 14 18 18 C 1.37880 * 120.00012 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99930 * 179.97438 * 18 16 15 20 20 Si 1.86793 * 119.99946 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47098 * 89.99976 * 20 18 16 22 22 H 1.48500 * 109.47431 * 209.99918 * 20 18 16 23 23 H 1.48498 * 109.47300 * 330.00459 * 20 18 16 24 24 H 1.07995 * 120.05901 * 359.97438 * 4 3 2 25 25 H 1.08002 * 119.80652 * 180.02562 * 7 5 4 26 26 H 1.08007 * 119.94599 * 179.72542 * 8 7 5 27 27 H 1.08996 * 109.47153 * 300.00429 * 11 10 9 28 28 H 1.09001 * 109.46833 * 59.99885 * 11 10 9 29 29 H 0.96993 * 119.99805 * 0.02562 * 14 12 11 30 30 H 1.09004 * 109.47312 * 299.99697 * 15 14 12 31 31 H 1.08996 * 109.47304 * 60.00430 * 15 14 12 32 32 H 0.97001 * 119.99865 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2708 -0.7108 -0.9756 5 6 4.6499 -0.7055 -0.9702 6 35 5.6004 -1.6693 -2.2906 7 6 5.3421 0.0032 -0.0009 8 6 4.6588 0.7056 0.9721 9 6 3.2724 0.7156 0.9783 10 8 2.6002 1.4103 1.9309 11 6 3.3849 2.1148 2.8952 12 6 2.4734 2.8223 3.8645 13 8 1.2701 2.7317 3.7419 14 7 2.9952 3.5557 4.8677 15 6 2.1090 4.2430 5.8103 16 6 2.9366 4.9871 6.8264 17 1 4.0148 4.9513 6.7753 18 6 2.3173 5.7137 7.8212 19 7 3.0395 6.3627 8.7082 20 14 0.4524 5.7763 7.9090 21 1 -0.0407 4.6625 8.7585 22 1 0.0277 7.0723 8.4964 23 1 -0.1123 5.6436 6.5420 24 1 2.7352 -1.2639 -1.7328 25 1 6.4221 0.0025 -0.0040 26 1 5.2052 1.2519 1.7267 27 1 4.0145 1.4090 3.4369 28 1 4.0131 2.8467 2.3875 29 1 3.9575 3.6285 4.9654 30 1 1.4790 4.9485 5.2684 31 1 1.4811 3.5111 6.3183 32 1 2.6038 6.8741 9.4078 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122393797.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:25 Heat of formation + Delta-G solvation = -36.750290 kcal Electronic energy + Delta-G solvation = -19378.907671 eV Core-core repulsion = 15964.612380 eV Total energy + Delta-G solvation = -3414.295292 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.73382 -40.47535 -38.70439 -37.55797 -36.22759 -34.46912 -33.13827 -32.55110 -31.14115 -29.84932 -28.48344 -25.25316 -24.34751 -23.15996 -21.69123 -20.43351 -19.28183 -18.82340 -18.05444 -17.55901 -17.09934 -16.92822 -16.10972 -16.00302 -15.91729 -15.49958 -15.03750 -14.95366 -14.42679 -14.28362 -14.19946 -14.01056 -13.90856 -13.74687 -13.10965 -12.82717 -12.77251 -12.54962 -12.37229 -11.96931 -11.66562 -11.34380 -11.25062 -10.95412 -10.93160 -10.24946 -10.03856 -9.33651 -8.41202 -6.47476 -0.39881 0.00945 0.59755 1.30455 1.33921 1.45139 1.46773 1.55422 1.58720 1.76721 2.26246 2.61689 2.64447 2.77144 2.94589 3.54516 3.69924 3.87402 4.00514 4.06690 4.12987 4.17373 4.56306 4.67997 4.75969 4.98231 4.99041 5.01442 5.23526 5.33995 5.41583 5.96796 6.08934 6.40784 6.53364 6.74342 7.13640 7.32284 8.73003 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.028031 B = 0.002130 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.656158 B =13141.184299 C =14119.393160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C 0.277 3.723 3 C -0.076 4.076 4 C 0.005 3.995 5 C -0.139 4.139 6 Br -0.034 7.034 7 C -0.003 4.003 8 C -0.193 4.193 9 C 0.184 3.816 10 O -0.315 6.315 11 C 0.045 3.955 12 C 0.496 3.504 13 O -0.591 6.591 14 N -0.693 5.693 15 C 0.231 3.769 16 C -0.543 4.543 17 H 0.069 0.931 18 C 0.030 3.970 19 N -0.927 5.927 20 Si 0.930 3.070 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.264 1.264 24 H 0.160 0.840 25 H 0.176 0.824 26 H 0.184 0.816 27 H 0.143 0.857 28 H 0.143 0.857 29 H 0.417 0.583 30 H 0.012 0.988 31 H 0.011 0.989 32 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.925 -17.520 -23.972 32.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.142 5.142 2 C -0.037 4.037 3 C -0.081 4.081 4 C -0.017 4.017 5 C -0.219 4.219 6 Br 0.052 6.948 7 C -0.023 4.023 8 C -0.212 4.212 9 C 0.135 3.865 10 O -0.227 6.227 11 C -0.032 4.032 12 C 0.283 3.717 13 O -0.472 6.472 14 N -0.345 5.345 15 C 0.107 3.893 16 C -0.581 4.581 17 H 0.087 0.913 18 C -0.171 4.171 19 N -0.566 5.566 20 Si 0.754 3.246 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.189 1.189 24 H 0.178 0.822 25 H 0.194 0.806 26 H 0.202 0.798 27 H 0.160 0.840 28 H 0.160 0.840 29 H 0.254 0.746 30 H 0.029 0.971 31 H 0.029 0.971 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.458 -17.780 -24.330 32.239 hybrid contribution -0.532 0.679 0.944 1.278 sum 10.925 -17.102 -23.386 30.963 Atomic orbital electron populations 1.81243 1.13653 1.10020 1.09263 1.25718 0.92840 0.92567 0.92600 1.15297 0.83394 1.08346 1.01074 1.21027 0.92579 0.93397 0.94743 1.21615 0.93782 1.06173 1.00298 1.96800 1.73953 1.72957 1.51137 1.21530 1.02284 0.89375 0.89134 1.21597 0.90321 1.05571 1.03698 1.19310 0.91860 0.88874 0.86497 1.86156 1.36662 1.61268 1.38600 1.22850 0.92333 0.98377 0.89617 1.20921 0.89032 0.79536 0.82234 1.90726 1.18051 1.63852 1.74549 1.45786 1.11634 1.48941 1.28150 1.19129 0.90724 0.91506 0.87926 1.21256 0.94790 1.30572 1.11445 0.91328 1.25505 1.02477 0.94332 0.94774 1.69957 1.37592 1.32490 1.16582 0.85974 0.80937 0.78415 0.79255 1.19187 1.19880 1.18862 0.82208 0.80647 0.79849 0.83954 0.83988 0.74616 0.97054 0.97143 0.91841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -15.62 18.54 19.00 0.35 -15.27 16 2 C 0.28 7.53 14.87 88.33 1.31 8.85 16 3 C -0.08 -1.43 5.75 -21.21 -0.12 -1.55 16 4 C 0.00 0.06 9.49 22.55 0.21 0.27 16 5 C -0.14 -1.38 6.22 22.28 0.14 -1.24 16 6 Br -0.03 -0.32 33.69 -20.37 -0.69 -1.01 16 7 C 0.00 -0.02 9.77 22.32 0.22 0.20 16 8 C -0.19 -1.64 9.03 22.33 0.20 -1.44 16 9 C 0.18 3.20 6.69 22.83 0.15 3.36 16 10 O -0.32 -7.85 9.10 -71.37 -0.65 -8.50 16 11 C 0.05 0.85 5.22 71.23 0.37 1.22 16 12 C 0.50 16.77 7.91 87.65 0.69 17.46 16 13 O -0.59 -27.25 16.50 16.00 0.26 -26.98 16 14 N -0.69 -24.42 5.55 -466.78 -2.59 -27.01 16 15 C 0.23 10.79 4.50 85.63 0.39 11.18 16 16 C -0.54 -28.39 9.83 25.60 0.25 -28.14 16 17 H 0.07 3.68 7.84 -2.91 -0.02 3.66 16 18 C 0.03 1.64 5.47 84.66 0.46 2.10 16 19 N -0.93 -53.73 13.96 21.45 0.30 -53.43 16 20 Si 0.93 43.45 27.47 68.60 1.88 45.33 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 22 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 23 H -0.26 -12.40 6.54 99.48 0.65 -11.75 16 24 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 25 H 0.18 0.18 8.06 -2.91 -0.02 0.15 16 26 H 0.18 0.35 6.30 -2.91 -0.02 0.33 16 27 H 0.14 1.47 7.65 -2.39 -0.02 1.46 16 28 H 0.14 1.48 7.67 -2.39 -0.02 1.46 16 29 H 0.42 11.50 8.32 -92.71 -0.77 10.73 16 30 H 0.01 0.58 7.20 -2.38 -0.02 0.56 16 31 H 0.01 0.53 7.57 -2.39 -0.02 0.51 16 32 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -78.49 317.26 3.52 -74.97 By element: Atomic # 1 Polarization: -0.75 SS G_CDS: 0.36 Total: -0.38 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: 4.28 Total: 12.27 kcal Atomic # 7 Polarization: -93.76 SS G_CDS: -1.94 Total: -95.70 kcal Atomic # 8 Polarization: -35.09 SS G_CDS: -0.39 Total: -35.48 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 1.88 Total: 45.33 kcal Atomic # 35 Polarization: -0.32 SS G_CDS: -0.69 Total: -1.01 kcal Total: -78.49 3.52 -74.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122393797.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.221 kcal (2) G-P(sol) polarization free energy of solvation -78.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds