Wall clock time and date at job start Tue Mar 31 2020 20:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35920 * 116.99568 * 2 1 4 4 C 1.38820 * 119.98927 * 0.02562 * 3 2 1 5 5 C 1.38193 * 120.19526 * 180.02562 * 4 3 2 6 6 C 1.38171 * 120.16382 * 359.97438 * 5 4 3 7 7 Br 1.89102 * 120.01484 * 180.02562 * 6 5 4 8 8 C 1.39380 * 119.96982 * 359.97438 * 6 5 4 9 9 C 1.48457 * 120.09301 * 180.30159 * 8 6 5 10 10 N 1.34047 * 126.67197 * 179.41055 * 9 8 6 11 11 N 1.28987 * 107.26726 * 179.89022 * 10 9 8 12 12 N 1.28727 * 108.94483 * 0.37346 * 11 10 9 13 13 C 1.46498 * 125.34409 * 179.76487 * 12 11 10 14 14 C 1.50701 * 109.47061 * 269.99371 * 13 12 11 15 15 H 1.08004 * 119.99701 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00030 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00206 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99813 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46987 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46538 * 120.00690 * 18 16 14 21 21 H 1.48495 * 109.47002 * 240.00310 * 18 16 14 22 22 N 1.28872 * 109.31916 * 359.75680 * 12 11 10 23 23 C 1.38498 * 119.98517 * 180.02562 * 3 2 1 24 24 H 1.08997 * 109.47093 * 299.99370 * 1 2 3 25 25 H 1.08999 * 109.47133 * 60.00292 * 1 2 3 26 26 H 1.09004 * 109.46713 * 179.97438 * 1 2 3 27 27 H 1.08001 * 119.90350 * 0.02562 * 4 3 2 28 28 H 1.07996 * 119.92234 * 180.02562 * 5 4 3 29 29 H 1.08997 * 109.47427 * 29.99693 * 13 12 11 30 30 H 1.09003 * 109.47044 * 149.99941 * 13 12 11 31 31 H 0.96996 * 120.00249 * 179.97438 * 17 16 14 32 32 H 1.08003 * 120.08411 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2896 2.3751 0.0005 5 6 1.9125 3.6088 0.0000 6 6 3.2918 3.6901 -0.0005 7 35 4.1397 5.3803 -0.0005 8 6 4.0579 2.5257 0.0000 9 6 5.5401 2.6099 0.0062 10 7 6.4003 1.5819 0.0185 11 7 7.5907 2.0787 0.0176 12 7 7.5074 3.3633 0.0133 13 6 8.6450 4.2863 0.0160 14 6 9.0283 4.6072 1.4377 15 1 8.4795 4.1672 2.2573 16 6 10.0800 5.4616 1.6921 17 7 10.7485 5.9970 0.6941 18 14 10.5555 5.8588 3.4544 19 1 9.6543 5.1335 4.3856 20 1 11.9589 5.4373 3.6953 21 1 10.4316 7.3208 3.6830 22 7 6.2662 3.7100 0.0062 23 6 3.4291 1.2833 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2112 2.3165 0.0014 28 1 1.3198 4.5115 0.0008 29 1 9.4903 3.8226 -0.4924 30 1 8.3689 5.2048 -0.5020 31 1 11.4882 6.5984 0.8730 32 1 4.0185 0.3783 -0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126740860.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:37 Heat of formation + Delta-G solvation = 120.172519 kcal Electronic energy + Delta-G solvation = -20136.408469 eV Core-core repulsion = 16761.210612 eV Total energy + Delta-G solvation = -3375.197857 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.42824 -40.29627 -37.76609 -34.72130 -32.90572 -32.82927 -31.81663 -30.79852 -29.11912 -28.02162 -27.28362 -24.36312 -24.10872 -22.54984 -21.38547 -21.05812 -18.38270 -17.27267 -16.56342 -16.32023 -16.00817 -15.84932 -15.73627 -14.97087 -14.34578 -14.15786 -13.69714 -13.35630 -13.08257 -12.62711 -12.59116 -12.14411 -11.92161 -11.79173 -11.49455 -11.31441 -11.06637 -10.93467 -10.61065 -10.50269 -10.40348 -10.25229 -10.18247 -9.52645 -9.19240 -8.80040 -8.64896 -8.17425 -6.44010 -4.52279 0.75789 1.10058 1.86468 2.20276 2.80845 2.87172 3.14650 3.15006 3.22672 3.30938 3.66927 4.14589 4.21528 4.49945 4.70797 4.80623 4.86343 4.87997 4.96473 5.17805 5.18280 5.36815 5.70281 5.79193 5.94388 6.03974 6.21980 6.37982 6.40654 6.66616 6.91931 7.11062 7.15988 7.49025 7.59912 8.50231 9.14699 9.17867 10.65172 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.018853 B = 0.003821 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.835006 B = 7327.094433 C = 8150.363019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.312 6.312 3 C 0.138 3.862 4 C -0.199 4.199 5 C -0.053 4.053 6 C -0.109 4.109 7 Br -0.007 7.007 8 C 0.079 3.921 9 C 0.150 3.850 10 N -0.293 5.293 11 N -0.070 5.070 12 N -0.089 5.089 13 C 0.253 3.747 14 C -0.543 4.543 15 H 0.069 0.931 16 C 0.072 3.928 17 N -0.886 5.886 18 Si 0.913 3.087 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.278 1.278 22 N -0.260 5.260 23 C -0.115 4.115 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.101 0.899 27 H 0.137 0.863 28 H 0.139 0.861 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.272 0.728 32 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.666 -4.256 -2.734 21.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.225 6.225 3 C 0.093 3.907 4 C -0.220 4.220 5 C -0.073 4.073 6 C -0.192 4.192 7 Br 0.079 6.921 8 C 0.074 3.926 9 C -0.129 4.129 10 N -0.164 5.164 11 N -0.062 5.062 12 N -0.004 5.004 13 C 0.137 3.863 14 C -0.582 4.582 15 H 0.087 0.913 16 C -0.133 4.133 17 N -0.523 5.523 18 Si 0.740 3.260 19 H -0.194 1.194 20 H -0.204 1.204 21 H -0.204 1.204 22 N -0.113 5.113 23 C -0.137 4.137 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.119 0.881 27 H 0.155 0.845 28 H 0.157 0.843 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -19.360 -3.876 -2.793 19.940 hybrid contribution -0.506 0.279 0.897 1.067 sum -19.865 -3.597 -1.896 20.277 Atomic orbital electron populations 1.23100 0.78216 1.04129 1.01470 1.86115 1.21468 1.26422 1.88466 1.18814 0.91808 0.84394 0.95731 1.21268 1.00296 0.91695 1.08693 1.20784 0.91878 0.98035 0.96625 1.21861 0.94742 0.92511 1.10076 1.96837 1.79602 1.18420 1.97259 1.16847 0.85979 0.91788 0.97989 1.23220 0.95127 0.86343 1.08206 1.75869 0.94850 1.26479 1.19200 1.78820 1.16804 0.94350 1.16199 1.51187 1.06551 1.05377 1.37302 1.20424 0.78101 0.86685 1.01090 1.21108 1.17110 1.29962 0.90015 0.91285 1.24878 0.95049 0.94645 0.98739 1.69906 1.20820 1.30275 1.31263 0.86177 0.78599 0.78378 0.82883 1.19406 1.20354 1.20398 1.75682 0.91299 1.24994 1.19299 1.20353 0.91433 0.97821 1.04043 0.92462 0.92478 0.88099 0.84527 0.84294 0.90663 0.90797 0.91866 0.83136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.36 10.49 -19.49 -0.20 -3.57 16 3 C 0.14 1.67 6.68 -39.27 -0.26 1.41 16 4 C -0.20 -2.03 9.03 -39.38 -0.36 -2.38 16 5 C -0.05 -0.61 9.77 -39.62 -0.39 -1.00 16 6 C -0.11 -1.65 6.25 -39.18 -0.24 -1.90 16 7 Br -0.01 -0.12 30.52 -68.01 -2.08 -2.20 16 8 C 0.08 1.33 5.88 -104.89 -0.62 0.72 16 9 C 0.15 3.07 7.85 -156.30 -1.23 1.84 16 10 N -0.29 -6.35 12.23 32.15 0.39 -5.96 16 11 N -0.07 -1.63 13.23 60.35 0.80 -0.83 16 12 N -0.09 -2.09 3.98 -11.68 -0.05 -2.14 16 13 C 0.25 6.22 6.35 -5.19 -0.03 6.18 16 14 C -0.54 -14.47 9.39 -34.44 -0.32 -14.80 16 15 H 0.07 1.91 7.81 -52.48 -0.41 1.50 16 16 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 17 N -0.89 -23.91 13.29 55.43 0.74 -23.18 16 18 Si 0.91 20.59 29.54 -169.99 -5.02 15.57 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 22 N -0.26 -5.74 9.03 32.17 0.29 -5.45 16 23 C -0.11 -1.68 9.64 -39.11 -0.38 -2.06 16 24 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 25 H 0.06 0.28 7.66 -51.93 -0.40 -0.11 16 26 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.14 0.94 6.28 -52.49 -0.33 0.61 16 28 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 29 H 0.08 1.86 8.14 -51.93 -0.42 1.43 16 30 H 0.07 1.83 8.14 -51.93 -0.42 1.41 16 31 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 32 H 0.15 2.21 7.89 -52.48 -0.41 1.80 16 LS Contribution 307.82 15.07 4.64 4.64 Total: -1.00 -29.31 307.82 -6.20 -35.51 By element: Atomic # 1 Polarization: -0.58 SS G_CDS: -2.77 Total: -3.36 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: -2.93 Total: -9.04 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 2.17 Total: -37.56 kcal Atomic # 8 Polarization: -3.36 SS G_CDS: -0.20 Total: -3.57 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 35 Polarization: -0.12 SS G_CDS: -2.08 Total: -2.20 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.31 -6.20 -35.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126740860.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.680 kcal (2) G-P(sol) polarization free energy of solvation -29.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds