Wall clock time and date at job start Tue Mar 31 2020 20:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35920 * 116.99568 * 2 1 4 4 C 1.38820 * 119.98927 * 0.02562 * 3 2 1 5 5 C 1.38193 * 120.19526 * 180.02562 * 4 3 2 6 6 C 1.38171 * 120.16382 * 359.97438 * 5 4 3 7 7 Br 1.89102 * 120.01484 * 180.02562 * 6 5 4 8 8 C 1.39380 * 119.96982 * 359.97438 * 6 5 4 9 9 C 1.48457 * 120.09301 * 180.30159 * 8 6 5 10 10 N 1.34047 * 126.67197 * 179.41055 * 9 8 6 11 11 N 1.28987 * 107.26726 * 179.89022 * 10 9 8 12 12 N 1.28727 * 108.94483 * 0.37346 * 11 10 9 13 13 C 1.46498 * 125.34409 * 179.76487 * 12 11 10 14 14 C 1.50701 * 109.47061 * 269.99371 * 13 12 11 15 15 H 1.08004 * 119.99701 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00030 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00206 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99813 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46987 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46538 * 120.00690 * 18 16 14 21 21 H 1.48495 * 109.47002 * 240.00310 * 18 16 14 22 22 N 1.28872 * 109.31916 * 359.75680 * 12 11 10 23 23 C 1.38498 * 119.98517 * 180.02562 * 3 2 1 24 24 H 1.08997 * 109.47093 * 299.99370 * 1 2 3 25 25 H 1.08999 * 109.47133 * 60.00292 * 1 2 3 26 26 H 1.09004 * 109.46713 * 179.97438 * 1 2 3 27 27 H 1.08001 * 119.90350 * 0.02562 * 4 3 2 28 28 H 1.07996 * 119.92234 * 180.02562 * 5 4 3 29 29 H 1.08997 * 109.47427 * 29.99693 * 13 12 11 30 30 H 1.09003 * 109.47044 * 149.99941 * 13 12 11 31 31 H 0.96996 * 120.00249 * 179.97438 * 17 16 14 32 32 H 1.08003 * 120.08411 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2896 2.3751 0.0005 5 6 1.9125 3.6088 0.0000 6 6 3.2918 3.6901 -0.0005 7 35 4.1397 5.3803 -0.0005 8 6 4.0579 2.5257 0.0000 9 6 5.5401 2.6099 0.0062 10 7 6.4003 1.5819 0.0185 11 7 7.5907 2.0787 0.0176 12 7 7.5074 3.3633 0.0133 13 6 8.6450 4.2863 0.0160 14 6 9.0283 4.6072 1.4377 15 1 8.4795 4.1672 2.2573 16 6 10.0800 5.4616 1.6921 17 7 10.7485 5.9970 0.6941 18 14 10.5555 5.8588 3.4544 19 1 9.6543 5.1335 4.3856 20 1 11.9589 5.4373 3.6953 21 1 10.4316 7.3208 3.6830 22 7 6.2662 3.7100 0.0062 23 6 3.4291 1.2833 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2112 2.3165 0.0014 28 1 1.3198 4.5115 0.0008 29 1 9.4903 3.8226 -0.4924 30 1 8.3689 5.2048 -0.5020 31 1 11.4882 6.5984 0.8730 32 1 4.0185 0.3783 -0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126740860.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:36 Heat of formation + Delta-G solvation = 102.329097 kcal Electronic energy + Delta-G solvation = -20137.182217 eV Core-core repulsion = 16761.210612 eV Total energy + Delta-G solvation = -3375.971606 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.14974 -41.20906 -38.71892 -36.53770 -34.73767 -34.40965 -32.91425 -32.13739 -30.34243 -29.65033 -27.96201 -26.25853 -25.45009 -23.92808 -22.90249 -22.29097 -19.44129 -19.21051 -18.15441 -17.62964 -17.28942 -16.85209 -16.67439 -16.46403 -15.97605 -15.15827 -14.75548 -14.68622 -14.64361 -14.23317 -14.11471 -13.36501 -13.27984 -12.94589 -12.89558 -12.72309 -12.53152 -12.47275 -12.22529 -12.16839 -11.98665 -11.83681 -11.41791 -11.14843 -10.81567 -10.54505 -9.91496 -9.21467 -8.46050 -6.62362 -0.39800 0.10158 0.42618 0.71467 1.26260 1.36871 1.38021 1.39375 1.52659 2.18085 2.30191 2.53773 2.80318 2.89277 3.32055 3.67744 3.86847 4.05405 4.27253 4.39644 4.43963 4.49427 4.57594 4.65501 4.73700 4.84807 4.86621 5.02588 5.07248 5.15107 5.26362 5.41025 5.47847 5.58216 6.31966 6.42183 7.08420 7.44273 8.63791 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.018853 B = 0.003821 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.835006 B = 7327.094433 C = 8150.363019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.327 6.327 3 C 0.146 3.854 4 C -0.174 4.174 5 C -0.043 4.043 6 C -0.121 4.121 7 Br -0.030 7.030 8 C 0.044 3.956 9 C 0.160 3.840 10 N -0.300 5.300 11 N -0.088 5.088 12 N -0.102 5.102 13 C 0.267 3.733 14 C -0.562 4.562 15 H 0.053 0.947 16 C 0.033 3.967 17 N -0.909 5.909 18 Si 0.975 3.025 19 H -0.275 1.275 20 H -0.268 1.268 21 H -0.268 1.268 22 N -0.272 5.272 23 C -0.125 4.125 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.119 0.881 27 H 0.183 0.817 28 H 0.171 0.829 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.279 0.721 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.648 -4.390 -2.088 24.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.241 6.241 3 C 0.099 3.901 4 C -0.193 4.193 5 C -0.063 4.063 6 C -0.203 4.203 7 Br 0.056 6.944 8 C 0.039 3.961 9 C -0.119 4.119 10 N -0.170 5.170 11 N -0.079 5.079 12 N -0.017 5.017 13 C 0.150 3.850 14 C -0.601 4.601 15 H 0.071 0.929 16 C -0.170 4.170 17 N -0.546 5.546 18 Si 0.799 3.201 19 H -0.200 1.200 20 H -0.192 1.192 21 H -0.193 1.193 22 N -0.125 5.125 23 C -0.147 4.147 24 H 0.092 0.908 25 H 0.093 0.907 26 H 0.137 0.863 27 H 0.200 0.800 28 H 0.188 0.812 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -22.355 -4.021 -2.160 22.817 hybrid contribution 0.157 0.174 0.654 0.695 sum -22.198 -3.847 -1.506 22.579 Atomic orbital electron populations 1.23515 0.75461 1.06108 1.03100 1.86119 1.24256 1.25735 1.87953 1.18814 0.90956 0.85793 0.94540 1.21724 1.02318 0.90054 1.05246 1.21166 0.90305 0.99967 0.94833 1.21966 0.96076 0.90800 1.11470 1.96811 1.80441 1.19761 1.97384 1.16923 0.83954 0.93502 1.01699 1.23951 0.96821 0.85318 1.05785 1.75832 0.94704 1.26762 1.19712 1.78772 1.17796 0.94461 1.16920 1.51036 1.06861 1.05260 1.38551 1.20082 0.78370 0.86471 1.00102 1.21203 1.17724 1.30727 0.90415 0.92906 1.25648 0.94643 0.94120 1.02599 1.69967 1.21138 1.30482 1.33043 0.85244 0.78424 0.78484 0.77990 1.19953 1.19242 1.19263 1.75703 0.90822 1.25668 1.20259 1.20302 0.93019 0.96580 1.04811 0.90779 0.90681 0.86292 0.80007 0.81173 0.91366 0.91569 0.91211 0.84227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.81 113.37 1.11 1.20 16 2 O -0.33 -6.06 10.49 -92.65 -0.97 -7.03 16 3 C 0.15 3.12 6.68 22.47 0.15 3.27 16 4 C -0.17 -2.75 9.03 22.40 0.20 -2.55 16 5 C -0.04 -0.84 9.77 22.24 0.22 -0.63 16 6 C -0.12 -3.51 6.25 22.53 0.14 -3.37 16 7 Br -0.03 -0.98 30.52 -20.37 -0.62 -1.60 16 8 C 0.04 1.49 5.88 -20.04 -0.12 1.38 16 9 C 0.16 6.76 7.85 137.38 1.08 7.84 16 10 N -0.30 -13.44 12.23 -52.18 -0.64 -14.08 16 11 N -0.09 -4.24 13.23 37.02 0.49 -3.75 16 12 N -0.10 -5.01 3.98 -190.85 -0.76 -5.77 16 13 C 0.27 13.67 6.35 85.63 0.54 14.21 16 14 C -0.56 -30.83 9.39 25.60 0.24 -30.59 16 15 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 16 C 0.03 1.74 5.46 84.66 0.46 2.20 16 17 N -0.91 -49.48 13.29 21.45 0.28 -49.19 16 18 Si 0.98 42.23 29.54 68.60 2.03 44.25 16 19 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 20 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 21 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 22 N -0.27 -12.46 9.03 -52.13 -0.47 -12.93 16 23 C -0.13 -3.60 9.64 22.57 0.22 -3.38 16 24 H 0.07 0.36 7.66 -2.39 -0.02 0.35 16 25 H 0.07 0.35 7.66 -2.39 -0.02 0.33 16 26 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.18 1.27 6.28 -2.91 -0.02 1.25 16 28 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 29 H 0.07 3.53 8.14 -2.39 -0.02 3.51 16 30 H 0.07 3.44 8.14 -2.39 -0.02 3.43 16 31 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 32 H 0.14 4.20 7.89 -2.91 -0.02 4.18 16 Total: -1.00 -65.28 307.82 4.75 -60.53 By element: Atomic # 1 Polarization: -1.18 SS G_CDS: 1.17 Total: -0.01 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: 4.25 Total: -10.41 kcal Atomic # 7 Polarization: -84.63 SS G_CDS: -1.09 Total: -85.73 kcal Atomic # 8 Polarization: -6.06 SS G_CDS: -0.97 Total: -7.03 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.25 kcal Atomic # 35 Polarization: -0.98 SS G_CDS: -0.62 Total: -1.60 kcal Total: -65.28 4.75 -60.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126740860.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.860 kcal (2) G-P(sol) polarization free energy of solvation -65.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds