Wall clock time and date at job start Tue Mar 31 2020 21:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86801 * 119.99651 * 2 1 4 4 H 1.48503 * 109.46821 * 269.99932 * 3 2 1 5 5 H 1.48494 * 109.47418 * 30.00005 * 3 2 1 6 6 H 1.48499 * 109.47063 * 150.00107 * 3 2 1 7 7 C 1.40044 * 120.00361 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00574 * 179.97438 * 7 2 1 9 9 C 1.46380 * 119.99726 * 0.02562 * 7 2 1 10 10 O 1.21683 * 120.00479 * 359.97438 * 9 7 2 11 11 N 1.34776 * 119.99741 * 180.02562 * 9 7 2 12 12 C 1.46498 * 119.99928 * 179.97438 * 11 9 7 13 13 C 1.53008 * 109.47393 * 179.97438 * 12 11 9 14 14 O 1.42901 * 109.46624 * 64.99659 * 13 12 11 15 15 C 1.35701 * 116.99606 * 179.97438 * 14 13 12 16 16 N 1.32254 * 119.69276 * 0.02562 * 15 14 13 17 17 C 1.31945 * 121.66028 * 179.97438 * 16 15 14 18 18 C 1.38074 * 120.85974 * 359.97438 * 17 16 15 19 19 C 1.50706 * 120.35385 * 179.97438 * 18 17 16 20 20 F 1.39900 * 109.46715 * 0.02562 * 19 18 17 21 21 F 1.39897 * 109.47068 * 119.99934 * 19 18 17 22 22 F 1.39895 * 109.47042 * 240.00243 * 19 18 17 23 23 C 1.38784 * 119.29825 * 0.25266 * 18 17 16 24 24 C 1.38504 * 118.47542 * 359.52896 * 23 18 17 25 25 Cl 1.73594 * 120.45855 * 180.22218 * 24 23 18 26 26 H 0.96996 * 120.00642 * 0.02562 * 1 2 3 27 27 H 0.97002 * 120.00470 * 359.97438 * 11 9 7 28 28 H 1.08995 * 109.47398 * 59.99743 * 12 11 9 29 29 H 1.09005 * 109.47061 * 299.99487 * 12 11 9 30 30 H 1.08999 * 109.46973 * 305.00499 * 13 12 11 31 31 H 1.08996 * 109.47021 * 184.99719 * 13 12 11 32 32 H 1.07998 * 119.56811 * 179.97438 * 17 16 15 33 33 H 1.08008 * 120.76444 * 179.74947 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.4881 2.0464 -1.4001 5 1 1.4381 2.6527 0.7000 6 1 3.5382 1.4403 0.7000 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0583 -2.4806 0.0005 11 7 1.9491 -3.6476 0.0016 12 6 1.2166 -4.9164 0.0022 13 6 2.2109 -6.0793 0.0027 14 8 2.9532 -6.0707 1.2237 15 6 3.8842 -7.0446 1.3856 16 7 4.0658 -7.9424 0.4315 17 6 4.9602 -8.9054 0.5479 18 6 5.7450 -9.0102 1.6790 19 6 6.7628 -10.1150 1.8002 20 9 6.7309 -10.9068 0.6472 21 9 8.0383 -9.5598 1.9490 22 9 6.4643 -10.9037 2.9164 23 6 5.5827 -8.0907 2.7059 24 6 4.6389 -7.0888 2.5520 25 17 4.3971 -5.9082 3.8014 26 1 -0.4851 0.8400 -0.0004 27 1 2.9191 -3.6476 0.0020 28 1 0.5903 -4.9748 -0.8880 29 1 0.5897 -4.9736 0.8920 30 1 2.8951 -5.9728 -0.8391 31 1 1.6689 -7.0208 -0.0864 32 1 5.0800 -9.6209 -0.2521 33 1 6.1810 -8.1529 3.6029 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153884738.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:08 Heat of formation + Delta-G solvation = -195.171055 kcal Electronic energy + Delta-G solvation = -25782.999282 eV Core-core repulsion = 21034.405296 eV Total energy + Delta-G solvation = -4748.593986 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.043 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.58488 -48.11408 -48.02949 -41.24298 -38.67204 -37.14465 -36.89555 -33.74502 -33.26813 -32.35932 -31.59180 -29.15880 -26.53008 -26.06793 -24.64291 -23.02909 -22.16218 -19.79137 -19.20333 -18.94710 -18.90935 -18.69217 -17.56744 -17.06829 -16.47424 -15.82250 -15.33146 -15.01551 -14.97110 -14.84520 -14.67720 -14.47817 -14.37391 -14.24665 -14.19039 -13.90710 -13.69050 -13.46821 -13.17958 -12.62551 -12.39076 -12.29247 -11.67731 -11.60824 -11.42435 -11.11753 -11.06562 -10.86964 -10.45551 -10.37217 -10.29986 -10.21976 -8.99524 -8.85684 -7.64444 -7.55814 -6.19287 -4.64355 0.21450 0.39956 1.65861 2.17982 2.56537 2.87811 3.14183 3.21078 3.24081 3.24710 3.53952 3.71661 3.96712 4.09267 4.10164 4.27655 4.58339 4.60603 4.73276 4.84919 5.06367 5.19721 5.31483 5.41095 5.56053 5.77090 6.21411 6.33729 6.80616 7.09488 7.43355 7.89851 8.04119 8.31429 9.02288 9.50030 10.58868 10.77076 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.020630 B = 0.002394 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.899102 B =11693.474012 C =12106.909777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.067 0.933 9 C 0.555 3.445 10 O -0.582 6.582 11 N -0.766 5.766 12 C 0.133 3.867 13 C 0.058 3.942 14 O -0.273 6.273 15 C 0.373 3.627 16 N -0.522 5.522 17 C 0.202 3.798 18 C -0.281 4.281 19 C 0.525 3.475 20 F -0.174 7.174 21 F -0.174 7.174 22 F -0.174 7.174 23 C 0.017 3.983 24 C -0.118 4.118 25 Cl -0.018 7.018 26 H 0.268 0.732 27 H 0.382 0.618 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.180 0.820 33 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.405 -20.987 4.190 25.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.086 0.914 9 C 0.360 3.640 10 O -0.465 6.465 11 N -0.422 5.422 12 C 0.008 3.992 13 C -0.017 4.017 14 O -0.176 6.176 15 C 0.193 3.807 16 N -0.246 5.246 17 C 0.044 3.956 18 C -0.286 4.286 19 C 0.470 3.530 20 F -0.155 7.155 21 F -0.155 7.155 22 F -0.156 7.156 23 C -0.009 4.009 24 C -0.148 4.148 25 Cl 0.011 6.989 26 H 0.079 0.921 27 H 0.213 0.787 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.197 0.803 33 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 12.662 -20.472 3.729 24.358 hybrid contribution 1.571 0.490 0.678 1.780 sum 14.233 -19.982 4.407 24.925 Atomic orbital electron populations 1.70016 1.07055 1.27274 1.35374 1.25706 0.94618 1.00296 0.92612 0.86375 0.80185 0.81401 0.78817 1.19746 1.20452 1.18895 1.20872 0.93588 0.89354 1.54280 0.91443 1.18208 0.87168 0.82389 0.76277 1.90599 1.14079 1.86821 1.54985 1.46116 1.08614 1.04560 1.82950 1.21014 0.92973 0.83033 1.02209 1.23314 0.94147 1.00535 0.83673 1.86516 1.45675 1.43905 1.41552 1.19890 0.86638 0.86292 0.87890 1.67811 1.22104 1.05592 1.29128 1.22479 0.86139 0.92408 0.94551 1.20727 1.05510 1.01815 1.00538 1.17816 0.80179 0.81127 0.73890 1.93181 1.96456 1.75933 1.49966 1.93242 1.41703 1.85175 1.95396 1.93238 1.93095 1.76099 1.53146 1.21041 0.92946 0.89021 0.97861 1.20771 1.02426 0.98370 0.93204 1.98439 1.96055 1.54896 1.49522 0.92103 0.78653 0.90612 0.92068 0.90479 0.90229 0.80315 0.82163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.10 11.83 55.55 0.66 -22.44 16 2 C 0.09 2.45 5.50 -17.37 -0.10 2.35 16 3 Si 0.91 20.19 29.56 -169.99 -5.02 15.17 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.54 -15.40 9.54 -35.63 -0.34 -15.74 16 8 H 0.07 1.76 7.85 -52.49 -0.41 1.34 16 9 C 0.56 15.75 7.75 -12.99 -0.10 15.65 16 10 O -0.58 -18.77 15.02 5.20 0.08 -18.69 16 11 N -0.77 -16.90 5.50 -61.72 -0.34 -17.24 16 12 C 0.13 2.41 6.06 -4.04 -0.02 2.39 16 13 C 0.06 0.79 5.44 37.16 0.20 1.00 16 14 O -0.27 -3.94 9.53 -18.81 -0.18 -4.12 16 15 C 0.37 4.64 7.49 -17.09 -0.13 4.51 16 16 N -0.52 -5.75 9.22 -13.30 -0.12 -5.87 16 17 C 0.20 1.71 10.59 -17.56 -0.19 1.52 16 18 C -0.28 -2.30 5.38 -104.48 -0.56 -2.86 16 19 C 0.52 4.00 3.33 36.01 0.12 4.12 16 20 F -0.17 -1.29 15.99 2.25 0.04 -1.25 16 21 F -0.17 -1.44 17.25 2.25 0.04 -1.40 16 22 F -0.17 -1.41 17.24 2.25 0.04 -1.37 16 23 C 0.02 0.14 9.56 -39.28 -0.38 -0.23 16 24 C -0.12 -1.31 6.36 -39.20 -0.25 -1.55 16 25 Cl -0.02 -0.22 28.54 -51.86 -1.48 -1.70 16 26 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 27 H 0.38 7.60 8.45 -40.82 -0.34 7.26 16 28 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.08 1.00 8.10 -51.93 -0.42 0.57 16 31 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 32 H 0.18 1.03 7.15 -52.49 -0.38 0.65 16 33 H 0.16 1.01 8.06 -52.48 -0.42 0.59 16 LS Contribution 330.29 15.07 4.98 4.98 Total: -1.00 -34.23 330.29 -5.44 -39.67 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -2.38 Total: 3.13 kcal Atomic # 6 Polarization: 12.89 SS G_CDS: -1.74 Total: 11.15 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: 0.20 Total: -45.55 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.10 Total: -22.81 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.11 Total: -4.02 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -1.48 Total: -1.70 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.23 -5.44 -39.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153884738.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.506 kcal (2) G-P(sol) polarization free energy of solvation -34.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds