Wall clock time and date at job start Tue Mar 31 2020 21:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86801 * 119.99651 * 2 1 4 4 H 1.48503 * 109.46821 * 269.99932 * 3 2 1 5 5 H 1.48494 * 109.47418 * 30.00005 * 3 2 1 6 6 H 1.48499 * 109.47063 * 150.00107 * 3 2 1 7 7 C 1.40044 * 120.00361 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00574 * 179.97438 * 7 2 1 9 9 C 1.46380 * 119.99726 * 0.02562 * 7 2 1 10 10 O 1.21683 * 120.00479 * 359.97438 * 9 7 2 11 11 N 1.34776 * 119.99741 * 180.02562 * 9 7 2 12 12 C 1.46498 * 119.99928 * 179.97438 * 11 9 7 13 13 C 1.53008 * 109.47393 * 179.97438 * 12 11 9 14 14 O 1.42901 * 109.46624 * 64.99659 * 13 12 11 15 15 C 1.35701 * 116.99606 * 179.97438 * 14 13 12 16 16 N 1.32254 * 119.69276 * 0.02562 * 15 14 13 17 17 C 1.31945 * 121.66028 * 179.97438 * 16 15 14 18 18 C 1.38074 * 120.85974 * 359.97438 * 17 16 15 19 19 C 1.50706 * 120.35385 * 179.97438 * 18 17 16 20 20 F 1.39900 * 109.46715 * 0.02562 * 19 18 17 21 21 F 1.39897 * 109.47068 * 119.99934 * 19 18 17 22 22 F 1.39895 * 109.47042 * 240.00243 * 19 18 17 23 23 C 1.38784 * 119.29825 * 0.25266 * 18 17 16 24 24 C 1.38504 * 118.47542 * 359.52896 * 23 18 17 25 25 Cl 1.73594 * 120.45855 * 180.22218 * 24 23 18 26 26 H 0.96996 * 120.00642 * 0.02562 * 1 2 3 27 27 H 0.97002 * 120.00470 * 359.97438 * 11 9 7 28 28 H 1.08995 * 109.47398 * 59.99743 * 12 11 9 29 29 H 1.09005 * 109.47061 * 299.99487 * 12 11 9 30 30 H 1.08999 * 109.46973 * 305.00499 * 13 12 11 31 31 H 1.08996 * 109.47021 * 184.99719 * 13 12 11 32 32 H 1.07998 * 119.56811 * 179.97438 * 17 16 15 33 33 H 1.08008 * 120.76444 * 179.74947 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.4881 2.0464 -1.4001 5 1 1.4381 2.6527 0.7000 6 1 3.5382 1.4403 0.7000 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0583 -2.4806 0.0005 11 7 1.9491 -3.6476 0.0016 12 6 1.2166 -4.9164 0.0022 13 6 2.2109 -6.0793 0.0027 14 8 2.9532 -6.0707 1.2237 15 6 3.8842 -7.0446 1.3856 16 7 4.0658 -7.9424 0.4315 17 6 4.9602 -8.9054 0.5479 18 6 5.7450 -9.0102 1.6790 19 6 6.7628 -10.1150 1.8002 20 9 6.7309 -10.9068 0.6472 21 9 8.0383 -9.5598 1.9490 22 9 6.4643 -10.9037 2.9164 23 6 5.5827 -8.0907 2.7059 24 6 4.6389 -7.0888 2.5520 25 17 4.3971 -5.9082 3.8014 26 1 -0.4851 0.8400 -0.0004 27 1 2.9191 -3.6476 0.0020 28 1 0.5903 -4.9748 -0.8880 29 1 0.5897 -4.9736 0.8920 30 1 2.8951 -5.9728 -0.8391 31 1 1.6689 -7.0208 -0.0864 32 1 5.0800 -9.6209 -0.2521 33 1 6.1810 -8.1529 3.6029 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153884738.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:08 Heat of formation + Delta-G solvation = -220.586825 kcal Electronic energy + Delta-G solvation = -25784.101393 eV Core-core repulsion = 21034.405296 eV Total energy + Delta-G solvation = -4749.696096 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.043 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.20739 -48.72359 -48.66327 -42.08249 -39.83629 -39.02192 -37.76860 -35.46704 -34.48830 -34.08961 -32.53324 -30.68092 -28.18813 -27.11791 -25.58625 -23.85546 -23.43106 -21.75271 -20.01870 -19.66578 -19.53079 -19.50329 -19.25171 -18.13847 -17.65343 -17.32000 -16.58700 -16.26915 -15.94908 -15.91729 -15.56917 -15.47415 -15.24180 -15.09327 -14.91326 -14.81440 -14.78925 -14.75059 -14.35113 -14.14922 -13.43500 -13.33199 -13.25333 -13.18867 -12.77400 -12.71571 -12.56047 -12.30001 -12.20096 -12.01419 -11.17901 -11.11105 -10.93281 -9.90556 -9.83650 -9.51149 -8.29602 -6.85628 -0.56343 -0.33882 0.82699 1.40150 1.41621 1.46699 1.56920 1.67412 2.09921 2.24740 2.46967 2.58690 2.87056 2.96352 3.08530 3.33966 3.40383 3.47135 3.62392 3.84056 3.91672 4.10519 4.13933 4.36807 4.49956 4.64272 4.81255 4.88797 5.31940 5.83597 5.86688 6.19315 6.24783 6.28745 6.86767 7.51215 8.47972 8.66798 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.020630 B = 0.002394 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.899102 B =11693.474012 C =12106.909777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.029 3.971 3 Si 0.997 3.003 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.251 1.251 7 C -0.573 4.573 8 H 0.085 0.915 9 C 0.539 3.461 10 O -0.632 6.632 11 N -0.753 5.753 12 C 0.132 3.868 13 C 0.076 3.924 14 O -0.296 6.296 15 C 0.356 3.644 16 N -0.531 5.531 17 C 0.205 3.795 18 C -0.273 4.273 19 C 0.533 3.467 20 F -0.170 7.170 21 F -0.176 7.176 22 F -0.175 7.175 23 C 0.027 3.973 24 C -0.129 4.129 25 Cl -0.034 7.034 26 H 0.275 0.725 27 H 0.394 0.606 28 H 0.074 0.926 29 H 0.042 0.958 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.209 0.791 33 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.891 -21.814 3.972 27.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.186 4.186 3 Si 0.816 3.184 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.174 1.174 7 C -0.610 4.610 8 H 0.103 0.897 9 C 0.343 3.657 10 O -0.520 6.520 11 N -0.408 5.408 12 C 0.008 3.992 13 C 0.001 3.999 14 O -0.202 6.202 15 C 0.176 3.824 16 N -0.255 5.255 17 C 0.048 3.952 18 C -0.277 4.277 19 C 0.478 3.522 20 F -0.151 7.151 21 F -0.157 7.157 22 F -0.157 7.157 23 C 0.002 3.998 24 C -0.159 4.159 25 Cl -0.005 7.005 26 H 0.085 0.915 27 H 0.227 0.773 28 H 0.092 0.908 29 H 0.060 0.940 30 H 0.106 0.894 31 H 0.122 0.878 32 H 0.225 0.775 33 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 15.202 -21.364 3.510 26.454 hybrid contribution 0.868 0.556 0.752 1.276 sum 16.070 -20.808 4.262 26.634 Atomic orbital electron populations 1.70178 1.09485 1.28964 1.36495 1.26963 0.95534 1.04934 0.91216 0.85030 0.78732 0.75123 0.79479 1.18455 1.19777 1.17387 1.21418 0.94663 0.90181 1.54700 0.89663 1.18560 0.86788 0.84310 0.75993 1.90551 1.16125 1.87969 1.57310 1.45771 1.09196 1.04617 1.81238 1.21095 0.93938 0.82971 1.01204 1.23040 0.93616 0.99113 0.84084 1.86444 1.46708 1.45378 1.41642 1.19976 0.86904 0.86624 0.88858 1.67816 1.22950 1.05925 1.28821 1.22969 0.85039 0.91904 0.95282 1.20818 1.05177 1.01547 1.00170 1.17621 0.79785 0.80829 0.73943 1.93195 1.96410 1.75776 1.49727 1.93246 1.41822 1.85226 1.95414 1.93244 1.93084 1.76086 1.53251 1.21304 0.91951 0.87858 0.98692 1.20850 1.03390 0.98985 0.92699 1.98431 1.96231 1.55733 1.50119 0.91537 0.77268 0.90847 0.94003 0.89381 0.87849 0.77490 0.79901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.66 11.83 21.83 0.26 -50.40 16 2 C 0.03 1.61 5.50 85.30 0.47 2.08 16 3 Si 1.00 41.23 29.56 68.60 2.03 43.26 16 4 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 5 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 6 H -0.25 -9.68 7.11 99.48 0.71 -8.98 16 7 C -0.57 -32.80 9.54 24.83 0.24 -32.56 16 8 H 0.09 4.40 7.85 -2.91 -0.02 4.38 16 9 C 0.54 31.48 7.75 86.36 0.67 32.15 16 10 O -0.63 -42.51 15.02 -4.29 -0.06 -42.57 16 11 N -0.75 -33.83 5.50 -467.40 -2.57 -36.40 16 12 C 0.13 4.90 6.06 86.38 0.52 5.43 16 13 C 0.08 2.02 5.44 71.98 0.39 2.41 16 14 O -0.30 -8.45 9.53 -90.21 -0.86 -9.31 16 15 C 0.36 8.42 7.49 84.81 0.63 9.06 16 16 N -0.53 -10.61 9.22 -308.85 -2.85 -13.46 16 17 C 0.21 2.90 10.59 84.64 0.90 3.80 16 18 C -0.27 -3.72 5.38 -19.77 -0.11 -3.83 16 19 C 0.53 6.63 3.33 71.24 0.24 6.87 16 20 F -0.17 -2.00 15.99 44.97 0.72 -1.28 16 21 F -0.18 -2.44 17.25 44.97 0.78 -1.67 16 22 F -0.18 -2.38 17.24 44.97 0.78 -1.60 16 23 C 0.03 0.41 9.56 22.46 0.21 0.62 16 24 C -0.13 -2.72 6.36 22.51 0.14 -2.57 16 25 Cl -0.03 -0.80 28.54 -2.72 -0.08 -0.88 16 26 H 0.27 15.30 8.29 -92.71 -0.77 14.54 16 27 H 0.39 15.70 8.45 -92.71 -0.78 14.92 16 28 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 29 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 30 H 0.09 2.15 8.10 -2.39 -0.02 2.13 16 31 H 0.10 2.26 8.10 -2.39 -0.02 2.24 16 32 H 0.21 1.64 7.15 -2.91 -0.02 1.62 16 33 H 0.18 1.84 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -76.33 330.29 2.87 -73.46 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.42 Total: 17.41 kcal Atomic # 6 Polarization: 19.13 SS G_CDS: 4.31 Total: 23.44 kcal Atomic # 7 Polarization: -95.10 SS G_CDS: -5.16 Total: -100.26 kcal Atomic # 8 Polarization: -50.95 SS G_CDS: -0.92 Total: -51.88 kcal Atomic # 9 Polarization: -6.82 SS G_CDS: 2.27 Total: -4.55 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -0.08 Total: -0.88 kcal Total: -76.33 2.87 -73.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153884738.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.124 kcal (2) G-P(sol) polarization free energy of solvation -76.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds