Wall clock time and date at job start Tue Mar 31 2020 20:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47651 * 2 1 4 4 C 1.50707 * 109.46817 * 120.00272 * 2 1 3 5 5 H 1.07997 * 120.00303 * 120.00319 * 4 2 1 6 6 C 1.37875 * 119.99771 * 299.99385 * 4 2 1 7 7 N 1.31522 * 120.00098 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 119.99990 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47007 * 60.00204 * 8 6 4 10 10 H 1.48503 * 109.47177 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47290 * 300.00633 * 8 6 4 12 12 N 1.46502 * 109.47038 * 239.99785 * 2 1 3 13 13 C 1.46497 * 120.00033 * 300.00194 * 12 2 1 14 14 S 1.65604 * 119.99891 * 120.00474 * 12 2 1 15 15 O 1.42102 * 106.40211 * 343.52272 * 14 12 2 16 16 O 1.42097 * 106.40123 * 210.60084 * 14 12 2 17 17 C 1.76204 * 107.21773 * 97.05819 * 14 12 2 18 18 C 1.38654 * 120.40421 * 112.67560 * 17 14 12 19 19 C 1.38604 * 118.45129 * 179.97438 * 18 17 14 20 20 C 1.38357 * 119.17926 * 0.02562 * 19 18 17 21 21 Cl 1.73599 * 119.62826 * 179.97438 * 20 19 18 22 22 N 1.31973 * 120.74810 * 0.02562 * 20 19 18 23 23 C 1.31996 * 121.68695 * 359.67738 * 22 20 19 24 24 Cl 1.73607 * 119.62399 * 180.29298 * 23 22 20 25 25 H 1.09001 * 109.47074 * 300.00150 * 1 2 3 26 26 H 1.08998 * 109.46724 * 59.99909 * 1 2 3 27 27 H 1.09000 * 109.47289 * 179.97438 * 1 2 3 28 28 H 0.97000 * 119.99462 * 179.97438 * 7 6 4 29 29 H 1.09003 * 109.47325 * 274.96839 * 13 12 2 30 30 H 1.08998 * 109.47157 * 34.96805 * 13 12 2 31 31 H 1.09000 * 109.46890 * 154.97093 * 13 12 2 32 32 H 1.08005 * 120.77291 * 0.02562 * 18 17 14 33 33 H 1.07999 * 120.40870 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1315 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3212 -1.1204 4.0079 9 1 3.8062 -1.1211 4.0082 10 1 1.8258 -0.4206 5.2205 11 1 1.8256 -2.5202 4.0077 12 7 2.0183 -0.6907 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 16 2.9705 0.1141 -2.2862 15 8 2.8163 1.4991 -2.0080 16 8 2.6967 -0.4585 -3.5576 17 6 4.6451 -0.2853 -1.9107 18 6 5.4010 -1.0417 -2.7934 19 6 6.7141 -1.3316 -2.4576 20 6 7.2241 -0.8607 -1.2608 21 17 8.8671 -1.2175 -0.8284 22 7 6.4754 -0.1441 -0.4437 23 6 5.2232 0.1556 -0.7342 24 17 4.2891 1.1084 0.3765 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 0.7082 1.1609 3.4844 29 1 2.3658 -2.7374 -0.8978 30 1 0.6541 -2.2781 -1.0629 31 1 1.7099 -2.3077 -2.4957 32 1 4.9767 -1.3959 -3.7213 33 1 7.3313 -1.9186 -3.1217 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171709369.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:56 Heat of formation + Delta-G solvation = -33.431543 kcal Electronic energy + Delta-G solvation = -23719.097848 eV Core-core repulsion = 19959.694175 eV Total energy + Delta-G solvation = -3759.403673 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.38182 -37.11293 -36.95745 -36.36737 -36.18405 -35.45802 -33.02502 -32.66496 -31.17960 -29.14909 -25.73452 -25.19457 -24.25872 -24.01794 -20.84681 -18.90809 -18.00863 -17.47856 -17.10007 -16.80508 -16.41432 -15.27975 -15.04818 -14.98708 -14.58746 -13.76674 -13.70772 -13.48819 -13.19306 -12.87773 -12.49560 -12.09455 -11.99499 -11.83127 -11.62382 -11.55698 -11.31583 -11.25898 -11.14088 -11.00335 -10.93970 -10.69579 -10.47377 -10.34141 -10.17558 -10.05027 -9.84875 -9.35134 -9.07307 -8.48566 -8.08320 -6.11985 -4.18362 0.17869 0.76449 0.80495 1.31159 2.03053 3.03861 3.25827 3.31250 3.33846 3.45937 4.00820 4.26258 4.33057 4.37372 4.62192 4.86820 5.03888 5.19440 5.31826 5.43356 5.55677 5.93009 6.08249 6.21899 6.53325 6.77690 6.80801 7.03338 7.17721 7.34804 7.57570 7.73789 7.98661 8.20143 8.81813 9.46743 10.92908 Molecular weight = 338.00amu Principal moments of inertia in cm(-1) A = 0.012000 B = 0.006302 C = 0.004763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.737526 B = 4442.123461 C = 5877.763524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.260 3.740 3 H 0.070 0.930 4 C -0.519 4.519 5 H 0.061 0.939 6 C 0.070 3.930 7 N -0.886 5.886 8 Si 0.885 3.115 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.971 5.971 13 C 0.095 3.905 14 S 2.684 3.316 15 O -0.939 6.939 16 O -0.969 6.969 17 C -0.723 4.723 18 C 0.043 3.957 19 C -0.186 4.186 20 C 0.235 3.765 21 Cl -0.018 7.018 22 N -0.489 5.489 23 C 0.282 3.718 24 Cl 0.068 6.932 25 H 0.096 0.904 26 H 0.014 0.986 27 H 0.034 0.966 28 H 0.265 0.735 29 H 0.046 0.954 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.170 0.830 33 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.891 -4.922 -9.435 13.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.158 3.842 3 H 0.088 0.912 4 C -0.558 4.558 5 H 0.079 0.921 6 C -0.133 4.133 7 N -0.524 5.524 8 Si 0.712 3.288 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.813 5.813 13 C -0.051 4.051 14 S 2.769 3.231 15 O -0.929 6.929 16 O -0.959 6.959 17 C -0.807 4.807 18 C 0.017 3.983 19 C -0.208 4.208 20 C 0.070 3.930 21 Cl 0.011 6.989 22 N -0.203 5.203 23 C 0.116 3.884 24 Cl 0.098 6.902 25 H 0.114 0.886 26 H 0.033 0.967 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.188 0.812 33 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 9.003 -3.907 -9.008 13.322 hybrid contribution 0.884 -1.194 0.924 1.750 sum 9.888 -5.101 -8.084 13.753 Atomic orbital electron populations 1.22089 0.97596 0.99838 1.01009 1.19044 0.91884 0.93424 0.79837 0.91210 1.21245 1.31695 1.12948 0.89946 0.92111 1.24800 0.94897 0.94902 0.98652 1.69850 1.36078 1.22526 1.23947 0.86751 0.79584 0.79876 0.82554 1.19970 1.21165 1.20230 1.57385 1.61840 1.21925 1.40128 1.21360 1.02506 0.81313 0.99883 1.02430 0.72730 0.74371 0.73563 1.93618 1.84695 1.29657 1.84889 1.93511 1.83494 1.79647 1.39215 1.32353 1.30213 1.14529 1.03585 1.21417 0.91864 0.87959 0.97102 1.21913 0.97129 1.04435 0.97311 1.21809 0.88335 0.92537 0.90366 1.98427 1.14741 1.92143 1.93616 1.66588 1.05696 1.14882 1.33150 1.21559 0.88418 0.89667 0.88714 1.98644 1.64288 1.67325 1.59968 0.88583 0.96739 0.94649 0.92540 0.93490 0.90115 0.91734 0.81241 0.82414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 8.94 37.16 0.33 -2.90 16 2 C 0.26 5.92 1.70 -69.08 -0.12 5.80 16 3 H 0.07 1.73 5.11 -51.93 -0.27 1.47 16 4 C -0.52 -12.52 6.63 -34.44 -0.23 -12.74 16 5 H 0.06 1.46 7.51 -52.49 -0.39 1.07 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -23.19 11.32 55.43 0.63 -22.57 16 8 Si 0.88 20.21 29.54 -169.99 -5.02 15.19 16 9 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 12 N -0.97 -18.85 3.06 -115.85 -0.35 -19.20 16 13 C 0.10 1.54 9.98 59.85 0.60 2.14 16 14 S 2.68 49.83 5.13 -107.50 -0.55 49.28 16 15 O -0.94 -19.88 14.79 -57.17 -0.85 -20.73 16 16 O -0.97 -17.52 15.77 -57.17 -0.90 -18.42 16 17 C -0.72 -12.17 5.94 -39.40 -0.23 -12.41 16 18 C 0.04 0.56 9.66 -39.29 -0.38 0.18 16 19 C -0.19 -2.18 9.88 -39.40 -0.39 -2.57 16 20 C 0.23 3.35 7.27 -17.45 -0.13 3.23 16 21 Cl -0.02 -0.21 29.11 -51.86 -1.51 -1.72 16 22 N -0.49 -8.64 10.32 -7.50 -0.08 -8.72 16 23 C 0.28 5.28 7.25 -17.45 -0.13 5.15 16 24 Cl 0.07 1.44 22.18 -51.86 -1.15 0.29 16 25 H 0.10 2.34 6.07 -51.93 -0.32 2.03 16 26 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.03 0.73 6.69 -51.93 -0.35 0.38 16 28 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 29 H 0.05 0.72 7.99 -51.93 -0.41 0.30 16 30 H 0.08 1.28 6.45 -51.93 -0.33 0.95 16 31 H 0.06 0.90 7.02 -51.93 -0.36 0.54 16 32 H 0.17 1.72 7.44 -52.48 -0.39 1.33 16 33 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 313.85 15.07 4.73 4.73 Total: -1.00 -28.56 313.85 -8.63 -37.19 By element: Atomic # 1 Polarization: -0.07 SS G_CDS: -2.81 Total: -2.87 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: -0.77 Total: -12.44 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: 0.20 Total: -50.49 kcal Atomic # 8 Polarization: -37.40 SS G_CDS: -1.75 Total: -39.15 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 16 Polarization: 49.83 SS G_CDS: -0.55 Total: 49.28 kcal Atomic # 17 Polarization: 1.23 SS G_CDS: -2.66 Total: -1.43 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.56 -8.63 -37.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171709369.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.759 kcal (2) G-P(sol) polarization free energy of solvation -28.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds