Wall clock time and date at job start Tue Mar 31 2020 20:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47651 * 2 1 4 4 C 1.50707 * 109.46817 * 120.00272 * 2 1 3 5 5 H 1.07997 * 120.00303 * 120.00319 * 4 2 1 6 6 C 1.37875 * 119.99771 * 299.99385 * 4 2 1 7 7 N 1.31522 * 120.00098 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 119.99990 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47007 * 60.00204 * 8 6 4 10 10 H 1.48503 * 109.47177 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47290 * 300.00633 * 8 6 4 12 12 N 1.46502 * 109.47038 * 239.99785 * 2 1 3 13 13 C 1.46497 * 120.00033 * 300.00194 * 12 2 1 14 14 S 1.65604 * 119.99891 * 120.00474 * 12 2 1 15 15 O 1.42102 * 106.40211 * 343.52272 * 14 12 2 16 16 O 1.42097 * 106.40123 * 210.60084 * 14 12 2 17 17 C 1.76204 * 107.21773 * 97.05819 * 14 12 2 18 18 C 1.38654 * 120.40421 * 112.67560 * 17 14 12 19 19 C 1.38604 * 118.45129 * 179.97438 * 18 17 14 20 20 C 1.38357 * 119.17926 * 0.02562 * 19 18 17 21 21 Cl 1.73599 * 119.62826 * 179.97438 * 20 19 18 22 22 N 1.31973 * 120.74810 * 0.02562 * 20 19 18 23 23 C 1.31996 * 121.68695 * 359.67738 * 22 20 19 24 24 Cl 1.73607 * 119.62399 * 180.29298 * 23 22 20 25 25 H 1.09001 * 109.47074 * 300.00150 * 1 2 3 26 26 H 1.08998 * 109.46724 * 59.99909 * 1 2 3 27 27 H 1.09000 * 109.47289 * 179.97438 * 1 2 3 28 28 H 0.97000 * 119.99462 * 179.97438 * 7 6 4 29 29 H 1.09003 * 109.47325 * 274.96839 * 13 12 2 30 30 H 1.08998 * 109.47157 * 34.96805 * 13 12 2 31 31 H 1.09000 * 109.46890 * 154.97093 * 13 12 2 32 32 H 1.08005 * 120.77291 * 0.02562 * 18 17 14 33 33 H 1.07999 * 120.40870 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1315 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3212 -1.1204 4.0079 9 1 3.8062 -1.1211 4.0082 10 1 1.8258 -0.4206 5.2205 11 1 1.8256 -2.5202 4.0077 12 7 2.0183 -0.6907 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 16 2.9705 0.1141 -2.2862 15 8 2.8163 1.4991 -2.0080 16 8 2.6967 -0.4585 -3.5576 17 6 4.6451 -0.2853 -1.9107 18 6 5.4010 -1.0417 -2.7934 19 6 6.7141 -1.3316 -2.4576 20 6 7.2241 -0.8607 -1.2608 21 17 8.8671 -1.2175 -0.8284 22 7 6.4754 -0.1441 -0.4437 23 6 5.2232 0.1556 -0.7342 24 17 4.2891 1.1084 0.3765 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 0.7082 1.1609 3.4844 29 1 2.3658 -2.7374 -0.8978 30 1 0.6541 -2.2781 -1.0629 31 1 1.7099 -2.3077 -2.4957 32 1 4.9767 -1.3959 -3.7213 33 1 7.3313 -1.9186 -3.1217 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171709369.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:55 Heat of formation + Delta-G solvation = -52.726137 kcal Electronic energy + Delta-G solvation = -23719.934524 eV Core-core repulsion = 19959.694175 eV Total energy + Delta-G solvation = -3760.240349 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.56255 -38.52053 -38.10671 -37.89967 -37.62509 -36.95927 -34.47032 -34.19168 -32.35080 -30.85811 -27.27077 -26.95441 -25.44235 -25.19178 -22.55303 -20.27790 -19.31004 -18.79222 -18.37738 -18.30053 -18.13023 -16.91795 -16.39451 -16.16000 -16.09832 -15.30309 -14.88060 -14.83395 -14.57196 -14.47381 -13.70417 -13.64492 -13.50439 -13.30400 -13.14836 -12.97258 -12.76079 -12.73086 -12.65009 -12.53701 -12.40179 -12.31847 -12.18160 -11.86030 -11.82041 -11.47983 -11.12924 -11.03307 -10.40341 -10.33946 -9.65297 -8.03194 -6.12060 -1.02386 -0.62920 -0.32892 0.19336 0.73329 1.42651 1.46399 1.49847 1.80387 2.08975 2.47795 2.61473 3.03481 3.20668 3.27286 3.52195 3.73637 3.86511 4.16302 4.25518 4.44048 4.80517 4.86909 4.93572 5.04672 5.09090 5.22728 5.25696 5.68658 5.75712 5.94249 5.98803 6.15682 6.35956 6.92177 7.54306 9.01034 Molecular weight = 338.00amu Principal moments of inertia in cm(-1) A = 0.012000 B = 0.006302 C = 0.004763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.737526 B = 4442.123461 C = 5877.763524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.264 3.736 3 H 0.047 0.953 4 C -0.507 4.507 5 H 0.059 0.941 6 C 0.032 3.968 7 N -0.912 5.912 8 Si 0.927 3.073 9 H -0.280 1.280 10 H -0.289 1.289 11 H -0.269 1.269 12 N -0.980 5.980 13 C 0.088 3.912 14 S 2.696 3.304 15 O -0.972 6.972 16 O -0.964 6.964 17 C -0.729 4.729 18 C 0.049 3.951 19 C -0.158 4.158 20 C 0.220 3.780 21 Cl 0.004 6.996 22 N -0.516 5.516 23 C 0.263 3.737 24 Cl 0.026 6.974 25 H 0.071 0.929 26 H 0.023 0.977 27 H 0.046 0.954 28 H 0.261 0.739 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.206 0.794 33 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.531 -7.260 -11.436 17.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.161 3.839 3 H 0.065 0.935 4 C -0.546 4.546 5 H 0.077 0.923 6 C -0.168 4.168 7 N -0.551 5.551 8 Si 0.754 3.246 9 H -0.206 1.206 10 H -0.215 1.215 11 H -0.194 1.194 12 N -0.821 5.821 13 C -0.057 4.057 14 S 2.784 3.216 15 O -0.963 6.963 16 O -0.954 6.954 17 C -0.817 4.817 18 C 0.023 3.977 19 C -0.179 4.179 20 C 0.056 3.944 21 Cl 0.033 6.967 22 N -0.231 5.231 23 C 0.097 3.903 24 Cl 0.055 6.945 25 H 0.090 0.910 26 H 0.042 0.958 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.223 0.777 33 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 10.628 -6.272 -11.026 16.549 hybrid contribution 0.587 -0.556 1.411 1.626 sum 11.214 -6.827 -9.615 16.273 Atomic orbital electron populations 1.21981 0.97526 1.00336 1.00263 1.18721 0.91937 0.92568 0.80713 0.93508 1.21372 1.30513 1.12331 0.90422 0.92254 1.25301 0.95395 0.95465 1.00598 1.69960 1.37519 1.23743 1.23911 0.86089 0.78633 0.79415 0.80476 1.20592 1.21493 1.19419 1.57277 1.62679 1.23106 1.39023 1.21587 1.02714 0.79663 1.01701 1.01826 0.73065 0.73493 0.73248 1.93579 1.85511 1.31903 1.85276 1.93507 1.83872 1.79360 1.38646 1.32059 1.29404 1.16177 1.04030 1.21947 0.92092 0.86351 0.97289 1.22472 0.96723 1.02373 0.96287 1.22304 0.89014 0.92115 0.90958 1.98438 1.12894 1.91795 1.93618 1.66460 1.05667 1.16194 1.34767 1.21401 0.89043 0.90862 0.88991 1.98622 1.65605 1.68701 1.61566 0.91036 0.95778 0.93453 0.92966 0.92710 0.90114 0.89193 0.77702 0.77341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.33 8.94 71.98 0.64 -5.68 16 2 C 0.26 12.14 1.70 44.25 0.08 12.21 16 3 H 0.05 2.41 5.11 -2.39 -0.01 2.40 16 4 C -0.51 -24.60 6.63 25.60 0.17 -24.43 16 5 H 0.06 2.84 7.51 -2.91 -0.02 2.82 16 6 C 0.03 1.65 5.30 84.65 0.45 2.10 16 7 N -0.91 -49.04 11.32 21.45 0.24 -48.80 16 8 Si 0.93 41.74 29.54 68.60 2.03 43.77 16 9 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 10 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 11 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 12 N -0.98 -37.24 3.06 -520.43 -1.59 -38.83 16 13 C 0.09 2.67 9.98 127.77 1.28 3.95 16 14 S 2.70 97.26 5.13 -56.49 -0.29 96.97 16 15 O -0.97 -41.85 14.79 -128.00 -1.89 -43.75 16 16 O -0.96 -32.41 15.77 -128.00 -2.02 -34.43 16 17 C -0.73 -23.27 5.94 22.39 0.13 -23.14 16 18 C 0.05 1.09 9.66 22.46 0.22 1.30 16 19 C -0.16 -2.94 9.88 22.39 0.22 -2.72 16 20 C 0.22 5.65 7.27 84.70 0.62 6.27 16 21 Cl 0.00 0.08 29.11 -2.72 -0.08 0.00 16 22 N -0.52 -17.68 10.32 -177.63 -1.83 -19.51 16 23 C 0.26 9.72 7.25 84.68 0.61 10.33 16 24 Cl 0.03 1.12 22.18 -2.72 -0.06 1.06 16 25 H 0.07 3.57 6.07 -2.39 -0.01 3.56 16 26 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.05 1.94 6.69 -2.39 -0.02 1.92 16 28 H 0.26 13.67 8.31 -92.71 -0.77 12.90 16 29 H 0.05 1.56 7.99 -2.39 -0.02 1.54 16 30 H 0.08 2.42 6.45 -2.39 -0.02 2.41 16 31 H 0.09 2.24 7.02 -2.39 -0.02 2.22 16 32 H 0.21 3.02 7.44 -2.91 -0.02 3.00 16 33 H 0.21 1.74 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -63.36 313.85 0.09 -63.28 By element: Atomic # 1 Polarization: -1.13 SS G_CDS: 1.17 Total: 0.04 kcal Atomic # 6 Polarization: -24.22 SS G_CDS: 4.41 Total: -19.80 kcal Atomic # 7 Polarization: -103.96 SS G_CDS: -3.18 Total: -107.14 kcal Atomic # 8 Polarization: -74.26 SS G_CDS: -3.91 Total: -78.17 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Atomic # 16 Polarization: 97.26 SS G_CDS: -0.29 Total: 96.97 kcal Atomic # 17 Polarization: 1.20 SS G_CDS: -0.14 Total: 1.06 kcal Total: -63.36 0.09 -63.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171709369.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.550 kcal (2) G-P(sol) polarization free energy of solvation -63.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds