Wall clock time and date at job start Tue Mar 31 2020 20:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50699 * 109.47078 * 239.99821 * 2 1 3 5 5 H 1.08003 * 119.99962 * 240.00350 * 4 2 1 6 6 C 1.37874 * 120.00270 * 59.99958 * 4 2 1 7 7 N 1.31516 * 119.99500 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00390 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46950 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47111 * 120.00373 * 8 6 4 11 11 H 1.48500 * 109.47074 * 240.00166 * 8 6 4 12 12 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 13 13 C 1.46505 * 119.99873 * 59.99624 * 12 2 1 14 14 S 1.65601 * 120.00051 * 239.99945 * 12 2 1 15 15 O 1.42100 * 106.40006 * 203.53712 * 14 12 2 16 16 O 1.42098 * 106.40043 * 336.45994 * 14 12 2 17 17 C 1.76199 * 107.21580 * 89.99958 * 14 12 2 18 18 C 1.38644 * 120.41295 * 114.72193 * 17 14 12 19 19 C 1.38601 * 118.45877 * 179.79969 * 18 17 14 20 20 C 1.38363 * 119.17597 * 0.45331 * 19 18 17 21 21 Cl 1.73603 * 119.62727 * 179.77056 * 20 19 18 22 22 N 1.31973 * 120.74677 * 359.78773 * 20 19 18 23 23 C 1.31991 * 121.69141 * 359.97438 * 22 20 19 24 24 Cl 1.73597 * 119.62893 * 179.97438 * 23 22 20 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 29 29 H 1.08999 * 109.46723 * 90.00515 * 13 12 2 30 30 H 1.08997 * 109.46979 * 210.00219 * 13 12 2 31 31 H 1.09005 * 109.46961 * 330.00570 * 13 12 2 32 32 H 1.08007 * 120.76918 * 0.02562 * 18 17 14 33 33 H 1.07997 * 120.41670 * 180.19803 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 3.1474 -2.2865 -3.6037 10 1 1.1678 -1.5867 -4.8165 11 1 3.1472 -0.1859 -4.8161 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4281 14 16 2.9705 0.1142 2.2862 15 8 3.7118 -0.8789 2.9815 16 8 3.5794 1.1829 1.5748 17 6 1.8961 0.8535 3.4711 18 6 1.9211 0.4414 4.7946 19 6 1.0616 1.0535 5.6933 20 6 0.2057 2.0423 5.2415 21 17 -0.8800 2.8126 6.3558 22 7 0.2052 2.4063 3.9729 23 6 1.0133 1.8483 3.0911 24 17 0.9671 2.3680 1.4354 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.7089 1.1613 -3.4844 29 1 2.4157 -2.7377 0.9718 30 1 1.6238 -2.2852 2.5002 31 1 0.6903 -2.3002 0.9846 32 1 2.5974 -0.3359 5.1186 33 1 1.0570 0.7594 6.7324 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171709372.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:59 Heat of formation + Delta-G solvation = -28.706996 kcal Electronic energy + Delta-G solvation = -23564.765790 eV Core-core repulsion = 19805.566989 eV Total energy + Delta-G solvation = -3759.198801 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.52991 -37.28159 -37.01959 -36.57427 -36.21877 -35.43553 -33.15753 -32.66087 -31.32286 -29.20754 -25.73998 -25.24334 -24.36667 -24.16378 -20.87141 -18.92998 -18.15465 -17.62341 -17.21548 -16.91580 -16.32406 -15.26464 -15.23187 -15.14676 -14.55758 -13.89823 -13.71840 -13.63025 -13.28872 -13.13381 -12.60636 -12.21341 -11.97429 -11.82268 -11.73467 -11.65737 -11.35389 -11.29176 -11.18771 -10.99392 -10.92581 -10.73421 -10.57987 -10.29070 -10.25495 -10.08696 -10.00260 -9.31484 -9.17525 -8.45735 -8.09756 -6.11689 -4.17804 0.04665 0.63925 0.72771 1.16397 1.78694 2.91194 3.26287 3.34773 3.37773 3.45497 3.97099 4.15717 4.24855 4.37571 4.49774 4.74450 4.98629 5.19890 5.20558 5.34279 5.47409 5.80504 6.04939 6.25333 6.53148 6.71185 6.74631 6.94950 7.01489 7.32293 7.56650 7.73310 7.98355 8.21021 8.83959 9.47624 10.94121 Molecular weight = 338.00amu Principal moments of inertia in cm(-1) A = 0.020120 B = 0.004467 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.315829 B = 6266.420400 C = 6975.091008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.260 3.740 3 H 0.070 0.930 4 C -0.518 4.518 5 H 0.065 0.935 6 C 0.065 3.935 7 N -0.889 5.889 8 Si 0.899 3.101 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.972 5.972 13 C 0.106 3.894 14 S 2.680 3.320 15 O -0.965 6.965 16 O -0.931 6.931 17 C -0.721 4.721 18 C 0.044 3.956 19 C -0.181 4.181 20 C 0.232 3.768 21 Cl -0.015 7.015 22 N -0.486 5.486 23 C 0.273 3.727 24 Cl 0.053 6.947 25 H 0.095 0.905 26 H 0.015 0.985 27 H 0.034 0.966 28 H 0.264 0.736 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.173 0.827 33 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.336 -0.412 16.035 16.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.158 3.842 3 H 0.087 0.913 4 C -0.558 4.558 5 H 0.084 0.916 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.813 5.813 13 C -0.040 4.040 14 S 2.764 3.236 15 O -0.955 6.955 16 O -0.921 6.921 17 C -0.804 4.804 18 C 0.017 3.983 19 C -0.202 4.202 20 C 0.068 3.932 21 Cl 0.014 6.986 22 N -0.201 5.201 23 C 0.108 3.892 24 Cl 0.082 6.918 25 H 0.114 0.886 26 H 0.034 0.966 27 H 0.053 0.947 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.190 0.810 33 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -2.236 0.569 15.620 15.789 hybrid contribution -0.215 -0.620 -0.235 0.697 sum -2.451 -0.051 15.385 15.579 Atomic orbital electron populations 1.22325 0.98074 0.99995 1.01161 1.19146 0.91514 0.93454 0.80081 0.91253 1.21349 1.31733 1.13025 0.89718 0.91645 1.24894 0.94902 0.95006 0.98983 1.69855 1.36406 1.22653 1.23830 0.86429 0.78622 0.79682 0.82627 1.19657 1.20997 1.20865 1.57429 1.70343 1.19540 1.34005 1.21264 1.02289 0.81382 0.99100 1.02711 0.74174 0.73911 0.72801 1.93518 1.67928 1.58836 1.75178 1.93635 1.72638 1.55632 1.70192 1.32535 1.20120 1.12599 1.15144 1.21452 0.93072 0.94206 0.89561 1.21975 0.97723 0.97944 1.02577 1.21822 0.91078 0.91431 0.88915 1.98435 1.62402 1.80612 1.57132 1.66559 1.23380 1.28666 1.01456 1.21520 0.88400 0.88926 0.90382 1.98624 1.96341 1.90201 1.06602 0.88620 0.96588 0.94665 0.92643 0.92472 0.93089 0.90529 0.81009 0.82204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.42 8.13 37.16 0.30 -3.12 16 2 C 0.26 6.05 1.63 -69.08 -0.11 5.94 16 3 H 0.07 1.74 4.44 -51.93 -0.23 1.51 16 4 C -0.52 -13.36 8.37 -34.44 -0.29 -13.65 16 5 H 0.07 1.67 7.65 -52.48 -0.40 1.27 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -23.89 11.32 55.43 0.63 -23.26 16 8 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 9 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.97 -19.24 3.06 -115.85 -0.35 -19.59 16 13 C 0.11 1.74 9.53 59.85 0.57 2.31 16 14 S 2.68 50.29 5.14 -107.50 -0.55 49.73 16 15 O -0.96 -17.81 16.12 -57.17 -0.92 -18.73 16 16 O -0.93 -20.37 15.24 -57.17 -0.87 -21.25 16 17 C -0.72 -11.53 5.93 -39.40 -0.23 -11.76 16 18 C 0.04 0.53 9.66 -39.30 -0.38 0.15 16 19 C -0.18 -1.92 9.88 -39.40 -0.39 -2.31 16 20 C 0.23 3.02 7.27 -17.44 -0.13 2.89 16 21 Cl -0.01 -0.15 29.11 -51.86 -1.51 -1.66 16 22 N -0.49 -7.83 10.32 -7.49 -0.08 -7.91 16 23 C 0.27 4.73 7.26 -17.45 -0.13 4.60 16 24 Cl 0.05 1.03 20.29 -51.86 -1.05 -0.02 16 25 H 0.10 2.34 6.07 -51.93 -0.32 2.02 16 26 H 0.02 0.31 6.18 -51.93 -0.32 -0.02 16 27 H 0.03 0.72 6.66 -51.93 -0.35 0.38 16 28 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.05 0.68 7.79 -51.93 -0.40 0.27 16 31 H 0.08 1.22 6.43 -51.93 -0.33 0.89 16 32 H 0.17 1.63 7.44 -52.48 -0.39 1.24 16 33 H 0.16 1.06 8.06 -52.49 -0.42 0.63 16 LS Contribution 311.58 15.07 4.70 4.70 Total: -1.00 -29.91 311.58 -8.64 -38.55 By element: Atomic # 1 Polarization: 0.01 SS G_CDS: -2.72 Total: -2.71 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -0.88 Total: -13.35 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: 0.20 Total: -50.77 kcal Atomic # 8 Polarization: -38.18 SS G_CDS: -1.79 Total: -39.97 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 50.29 SS G_CDS: -0.55 Total: 49.73 kcal Atomic # 17 Polarization: 0.88 SS G_CDS: -2.56 Total: -1.69 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.91 -8.64 -38.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171709372.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.846 kcal (2) G-P(sol) polarization free energy of solvation -29.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds