Wall clock time and date at job start Tue Mar 31 2020 20:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50699 * 109.47078 * 239.99821 * 2 1 3 5 5 H 1.08003 * 119.99962 * 240.00350 * 4 2 1 6 6 C 1.37874 * 120.00270 * 59.99958 * 4 2 1 7 7 N 1.31516 * 119.99500 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00390 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46950 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47111 * 120.00373 * 8 6 4 11 11 H 1.48500 * 109.47074 * 240.00166 * 8 6 4 12 12 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 13 13 C 1.46505 * 119.99873 * 59.99624 * 12 2 1 14 14 S 1.65601 * 120.00051 * 239.99945 * 12 2 1 15 15 O 1.42100 * 106.40006 * 203.53712 * 14 12 2 16 16 O 1.42098 * 106.40043 * 336.45994 * 14 12 2 17 17 C 1.76199 * 107.21580 * 89.99958 * 14 12 2 18 18 C 1.38644 * 120.41295 * 114.72193 * 17 14 12 19 19 C 1.38601 * 118.45877 * 179.79969 * 18 17 14 20 20 C 1.38363 * 119.17597 * 0.45331 * 19 18 17 21 21 Cl 1.73603 * 119.62727 * 179.77056 * 20 19 18 22 22 N 1.31973 * 120.74677 * 359.78773 * 20 19 18 23 23 C 1.31991 * 121.69141 * 359.97438 * 22 20 19 24 24 Cl 1.73597 * 119.62893 * 179.97438 * 23 22 20 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 29 29 H 1.08999 * 109.46723 * 90.00515 * 13 12 2 30 30 H 1.08997 * 109.46979 * 210.00219 * 13 12 2 31 31 H 1.09005 * 109.46961 * 330.00570 * 13 12 2 32 32 H 1.08007 * 120.76918 * 0.02562 * 18 17 14 33 33 H 1.07997 * 120.41670 * 180.19803 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 3.1474 -2.2865 -3.6037 10 1 1.1678 -1.5867 -4.8165 11 1 3.1472 -0.1859 -4.8161 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4281 14 16 2.9705 0.1142 2.2862 15 8 3.7118 -0.8789 2.9815 16 8 3.5794 1.1829 1.5748 17 6 1.8961 0.8535 3.4711 18 6 1.9211 0.4414 4.7946 19 6 1.0616 1.0535 5.6933 20 6 0.2057 2.0423 5.2415 21 17 -0.8800 2.8126 6.3558 22 7 0.2052 2.4063 3.9729 23 6 1.0133 1.8483 3.0911 24 17 0.9671 2.3680 1.4354 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.7089 1.1613 -3.4844 29 1 2.4157 -2.7377 0.9718 30 1 1.6238 -2.2852 2.5002 31 1 0.6903 -2.3002 0.9846 32 1 2.5974 -0.3359 5.1186 33 1 1.0570 0.7594 6.7324 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171709372.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:59 Heat of formation + Delta-G solvation = -49.623571 kcal Electronic energy + Delta-G solvation = -23565.672801 eV Core-core repulsion = 19805.566989 eV Total energy + Delta-G solvation = -3760.105812 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.62801 -38.63417 -38.17539 -37.96052 -37.70746 -36.96516 -34.51930 -34.24572 -32.41426 -30.93513 -27.28797 -27.04466 -25.49388 -25.25428 -22.59033 -20.27779 -19.43015 -18.92471 -18.57770 -18.32477 -17.99265 -16.94632 -16.48638 -16.19752 -16.15106 -15.28879 -15.09119 -14.86678 -14.79720 -14.45516 -13.86060 -13.73541 -13.50400 -13.27062 -13.15706 -12.98314 -12.81123 -12.75615 -12.65852 -12.56004 -12.42153 -12.30782 -12.10445 -12.01726 -11.82469 -11.50614 -11.20864 -10.94163 -10.47235 -10.35756 -9.69465 -8.08066 -6.20160 -1.08408 -0.69297 -0.38855 0.10398 0.61938 1.44188 1.47592 1.57319 1.76952 2.07720 2.46701 2.60558 2.99747 3.14835 3.21462 3.46917 3.68557 3.82378 4.09210 4.21599 4.41405 4.71502 4.87406 4.89427 4.99917 5.04315 5.17264 5.22163 5.64738 5.72278 5.89722 5.93044 6.13838 6.32952 6.86933 7.47858 8.96217 Molecular weight = 338.00amu Principal moments of inertia in cm(-1) A = 0.020120 B = 0.004467 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.315829 B = 6266.420400 C = 6975.091008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.263 3.737 3 H 0.050 0.950 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 0.953 3.047 9 H -0.267 1.267 10 H -0.278 1.278 11 H -0.286 1.286 12 N -0.983 5.983 13 C 0.096 3.904 14 S 2.692 3.308 15 O -0.964 6.964 16 O -0.972 6.972 17 C -0.726 4.726 18 C 0.050 3.950 19 C -0.152 4.152 20 C 0.220 3.780 21 Cl 0.008 6.992 22 N -0.508 5.508 23 C 0.258 3.742 24 Cl 0.015 6.985 25 H 0.067 0.933 26 H 0.031 0.969 27 H 0.041 0.959 28 H 0.263 0.737 29 H 0.054 0.946 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.206 0.794 33 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.514 -1.747 18.927 19.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.160 3.840 3 H 0.068 0.932 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.180 4.180 7 N -0.552 5.552 8 Si 0.779 3.221 9 H -0.191 1.191 10 H -0.204 1.204 11 H -0.212 1.212 12 N -0.823 5.823 13 C -0.049 4.049 14 S 2.780 3.220 15 O -0.954 6.954 16 O -0.963 6.963 17 C -0.814 4.814 18 C 0.024 3.976 19 C -0.173 4.173 20 C 0.057 3.943 21 Cl 0.037 6.963 22 N -0.223 5.223 23 C 0.092 3.908 24 Cl 0.045 6.955 25 H 0.086 0.914 26 H 0.050 0.950 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.105 0.895 31 H 0.097 0.903 32 H 0.223 0.777 33 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -2.396 -0.804 18.504 18.676 hybrid contribution -0.210 -0.170 -0.859 0.901 sum -2.606 -0.974 17.645 17.863 Atomic orbital electron populations 1.22106 0.97373 1.00096 1.00535 1.18828 0.91947 0.92595 0.80655 0.93212 1.21689 1.31494 1.13003 0.91144 0.92073 1.25585 0.95263 0.95703 1.01497 1.69980 1.37356 1.23709 1.24168 0.85585 0.78176 0.78691 0.79648 1.19146 1.20385 1.21216 1.57310 1.70376 1.20863 1.33773 1.21505 1.02224 0.79655 1.01508 1.01968 0.74013 0.73236 0.72774 1.93508 1.68229 1.58732 1.74925 1.93587 1.74137 1.56875 1.71657 1.32054 1.20058 1.13062 1.16178 1.21954 0.93390 0.94460 0.87837 1.22518 0.94906 0.95360 1.04484 1.22316 0.91822 0.92019 0.88188 1.98449 1.61735 1.80338 1.55786 1.66457 1.23664 1.29388 1.02809 1.21330 0.89947 0.90157 0.89381 1.98606 1.96619 1.90630 1.09690 0.91402 0.95000 0.93994 0.92772 0.92777 0.89529 0.90346 0.77724 0.77148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.33 8.13 71.98 0.59 -5.75 16 2 C 0.26 12.50 1.63 44.24 0.07 12.57 16 3 H 0.05 2.61 4.44 -2.39 -0.01 2.60 16 4 C -0.53 -28.01 8.37 25.60 0.21 -27.80 16 5 H 0.06 3.16 7.65 -2.91 -0.02 3.14 16 6 C 0.02 1.03 5.30 84.65 0.45 1.48 16 7 N -0.91 -50.50 11.32 21.45 0.24 -50.26 16 8 Si 0.95 42.63 29.54 68.60 2.03 44.66 16 9 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 10 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 11 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 12 N -0.98 -38.67 3.06 -520.43 -1.59 -40.27 16 13 C 0.10 3.04 9.53 127.77 1.22 4.25 16 14 S 2.69 99.35 5.14 -56.49 -0.29 99.06 16 15 O -0.96 -33.70 16.12 -128.00 -2.06 -35.77 16 16 O -0.97 -43.65 15.24 -128.00 -1.95 -45.60 16 17 C -0.73 -21.95 5.93 22.39 0.13 -21.82 16 18 C 0.05 1.01 9.66 22.45 0.22 1.23 16 19 C -0.15 -2.48 9.88 22.39 0.22 -2.26 16 20 C 0.22 5.03 7.27 84.70 0.62 5.65 16 21 Cl 0.01 0.15 29.11 -2.72 -0.08 0.07 16 22 N -0.51 -15.68 10.32 -177.62 -1.83 -17.51 16 23 C 0.26 8.77 7.26 84.69 0.61 9.39 16 24 Cl 0.02 0.62 20.29 -2.72 -0.06 0.57 16 25 H 0.07 3.43 6.07 -2.39 -0.01 3.41 16 26 H 0.03 1.28 6.18 -2.39 -0.01 1.26 16 27 H 0.04 1.74 6.66 -2.38 -0.02 1.73 16 28 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 29 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.09 2.07 7.79 -2.39 -0.02 2.05 16 31 H 0.08 2.42 6.43 -2.38 -0.02 2.41 16 32 H 0.21 2.79 7.44 -2.91 -0.02 2.76 16 33 H 0.21 1.30 8.06 -2.91 -0.02 1.28 16 Total: -1.00 -66.99 311.58 -0.08 -67.08 By element: Atomic # 1 Polarization: -0.13 SS G_CDS: 1.17 Total: 1.04 kcal Atomic # 6 Polarization: -27.40 SS G_CDS: 4.34 Total: -23.06 kcal Atomic # 7 Polarization: -104.85 SS G_CDS: -3.18 Total: -108.04 kcal Atomic # 8 Polarization: -77.35 SS G_CDS: -4.01 Total: -81.37 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Atomic # 16 Polarization: 99.35 SS G_CDS: -0.29 Total: 99.06 kcal Atomic # 17 Polarization: 0.77 SS G_CDS: -0.13 Total: 0.63 kcal Total: -66.99 -0.08 -67.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171709372.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.454 kcal (2) G-P(sol) polarization free energy of solvation -66.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds