Wall clock time and date at job start Tue Mar 31 2020 21:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86801 * 119.99799 * 2 1 4 4 H 1.48503 * 109.47171 * 269.99756 * 3 2 1 5 5 H 1.48497 * 109.46933 * 30.00052 * 3 2 1 6 6 H 1.48500 * 109.47124 * 149.99876 * 3 2 1 7 7 C 1.38954 * 120.00204 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99924 * 0.02562 * 7 2 1 9 9 N 1.37096 * 119.99920 * 179.97438 * 7 2 1 10 10 C 1.34773 * 119.99870 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00236 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00026 * 180.02562 * 10 9 7 13 13 N 1.46497 * 109.47217 * 179.97438 * 12 10 9 14 14 C 1.36584 * 127.17329 * 87.97591 * 13 12 10 15 15 S 1.76205 * 126.38128 * 359.94601 * 14 13 12 16 16 N 1.31432 * 107.23506 * 179.97438 * 14 13 12 17 17 N 1.28510 * 110.08220 * 0.02562 * 16 14 13 18 18 C 1.31268 * 109.96427 * 359.97438 * 17 16 14 19 19 C 1.47828 * 126.46469 * 180.02562 * 18 17 16 20 20 C 1.39578 * 120.13275 * 19.78659 * 19 18 17 21 21 C 1.37943 * 119.86809 * 179.73979 * 20 19 18 22 22 C 1.38474 * 120.12519 * 0.53512 * 21 20 19 23 23 Cl 1.73603 * 119.86218 * 179.69508 * 22 21 20 24 24 C 1.38472 * 120.27220 * 359.71869 * 22 21 20 25 25 C 1.37936 * 120.12824 * 0.02562 * 24 22 21 26 26 H 0.96996 * 120.00488 * 0.02562 * 1 2 3 27 27 H 0.97001 * 120.00300 * 0.02562 * 9 7 2 28 28 H 1.08999 * 109.47110 * 60.00520 * 12 10 9 29 29 H 1.08996 * 109.47317 * 300.00198 * 12 10 9 30 30 H 1.41000 * 99.99889 * 270.01838 * 15 14 13 31 31 H 1.08001 * 120.06561 * 359.97438 * 20 19 18 32 32 H 1.07995 * 119.93469 * 180.24790 * 21 20 19 33 33 H 1.07996 * 119.93768 * 180.02562 * 24 22 21 34 34 H 1.07999 * 120.06591 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4455 2.6526 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 1.4690 -2.1386 0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3704 0.0011 11 8 3.4474 -3.4209 0.0020 12 6 5.5608 -2.3704 0.0011 13 7 6.0492 -3.7516 0.0029 14 6 6.2881 -4.5439 -1.0837 15 16 6.0642 -4.0962 -2.7731 16 7 6.7154 -5.7027 -0.6342 17 7 6.7591 -5.6890 0.6501 18 6 6.3631 -4.5209 1.0995 19 6 6.2718 -4.1098 2.5165 20 6 6.9878 -4.8019 3.4945 21 6 6.9029 -4.4102 4.8144 22 6 6.1005 -3.3395 5.1713 23 17 5.9924 -2.8573 6.8355 24 6 5.3836 -2.6522 4.2063 25 6 5.4647 -3.0314 2.8826 26 1 -0.4851 0.8400 -0.0004 27 1 3.8649 -0.3632 -0.0004 28 1 5.9241 -1.8558 0.8906 29 1 5.9241 -1.8574 -0.8893 30 1 4.7250 -4.4971 -2.9573 31 1 7.6101 -5.6401 3.2178 32 1 7.4596 -4.9425 5.5714 33 1 4.7598 -1.8177 4.4907 34 1 4.9055 -2.4944 2.1307 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174156983.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:47 Heat of formation + Delta-G solvation = 78.807172 kcal Electronic energy + Delta-G solvation = -23988.815940 eV Core-core repulsion = 20269.004904 eV Total energy + Delta-G solvation = -3719.811036 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.034 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.88204 -39.41219 -38.83930 -36.69694 -35.05838 -34.21366 -32.43123 -32.06578 -31.34281 -29.23439 -28.70034 -25.00258 -23.73494 -23.47080 -22.18633 -21.15479 -19.98338 -19.02367 -18.08123 -17.40385 -16.89379 -16.74657 -16.04685 -15.56131 -15.46832 -15.12648 -14.82507 -14.35216 -14.17134 -13.73434 -13.66169 -13.56571 -13.05183 -12.61242 -12.52515 -12.13562 -11.90263 -11.77968 -11.68690 -11.43967 -11.38219 -11.03190 -10.87221 -10.62946 -10.55201 -10.24839 -9.94743 -9.75663 -9.30949 -8.97246 -8.55832 -8.45357 -8.39379 -6.62348 -4.16737 0.40492 1.05574 1.07123 1.61191 1.88305 2.27222 2.54113 2.77594 2.84532 2.87939 2.96299 3.15632 3.46913 3.82204 3.92305 4.16196 4.45943 4.53327 4.64091 4.86053 4.96582 4.98793 5.02655 5.21879 5.32558 5.39426 5.53974 5.71791 5.81270 5.93357 5.97491 6.20497 6.43889 6.55536 7.18540 7.72775 8.18232 8.52714 8.57878 9.02682 9.32530 10.48967 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.007566 B = 0.005194 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3699.926968 B = 5389.859813 C = 8554.902456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.050 3.950 3 Si 0.878 3.122 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.267 1.267 7 C -0.313 4.313 8 H 0.122 0.878 9 N -0.565 5.565 10 C 0.417 3.583 11 O -0.563 6.563 12 C 0.073 3.927 13 N -0.424 5.424 14 C 0.169 3.831 15 S -0.023 6.023 16 N -0.241 5.241 17 N -0.276 5.276 18 C 0.243 3.757 19 C -0.012 4.012 20 C -0.062 4.062 21 C -0.111 4.111 22 C -0.022 4.022 23 Cl -0.068 7.068 24 C -0.103 4.103 25 C -0.090 4.090 26 H 0.279 0.721 27 H 0.374 0.626 28 H 0.119 0.881 29 H 0.126 0.874 30 H 0.121 0.879 31 H 0.147 0.853 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.070 -0.274 5.781 16.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.156 4.156 3 Si 0.703 3.297 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.192 1.192 7 C -0.442 4.442 8 H 0.140 0.860 9 N -0.203 5.203 10 C 0.201 3.799 11 O -0.447 6.447 12 C -0.054 4.054 13 N -0.114 5.114 14 C -0.206 4.206 15 S 0.127 5.873 16 N -0.087 5.087 17 N -0.120 5.120 18 C -0.022 4.022 19 C -0.015 4.015 20 C -0.082 4.082 21 C -0.130 4.130 22 C -0.049 4.049 23 Cl -0.039 7.039 24 C -0.122 4.122 25 C -0.110 4.110 26 H 0.090 0.910 27 H 0.208 0.792 28 H 0.137 0.863 29 H 0.144 0.856 30 H 0.085 0.915 31 H 0.165 0.835 32 H 0.159 0.841 33 H 0.161 0.839 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 15.018 -1.891 4.988 15.937 hybrid contribution -0.997 2.270 0.959 2.658 sum 14.021 0.379 5.947 15.234 Atomic orbital electron populations 1.69606 1.05789 1.28203 1.46537 1.25086 0.95530 0.98239 0.96718 0.86697 0.79867 0.83722 0.79366 1.19107 1.19666 1.19228 1.19419 0.78521 0.96928 1.49304 0.86038 1.42125 1.07870 1.05719 1.64576 1.19476 0.87261 0.85514 0.87642 1.90669 1.68435 1.30624 1.54938 1.22118 0.96605 0.79665 1.07026 1.46455 1.46103 1.13116 1.05720 1.25740 1.09150 0.91539 0.94164 1.86651 1.21174 1.81554 0.97914 1.74734 1.15351 1.15838 1.02732 1.74383 1.19039 1.15492 1.03085 1.22779 1.01575 0.88938 0.88957 1.17546 0.99666 0.97155 0.87106 1.21148 0.97527 0.98670 0.90858 1.20986 0.99203 0.96238 0.96549 1.21119 1.00291 0.97814 0.85702 1.98379 1.97317 1.91257 1.16920 1.21000 0.99211 1.00610 0.91378 1.21558 0.96759 0.95930 0.96741 0.91032 0.79219 0.86306 0.85585 0.91464 0.83523 0.84079 0.83942 0.84190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.19 13.96 55.50 0.77 -22.41 16 2 C 0.05 1.24 5.50 -17.47 -0.10 1.14 16 3 Si 0.88 17.10 27.74 -169.99 -4.71 12.38 16 4 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 5 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 6 H -0.27 -4.55 6.52 56.52 0.37 -4.18 16 7 C -0.31 -7.95 10.16 -14.93 -0.15 -8.10 16 8 H 0.12 3.63 7.39 -52.49 -0.39 3.24 16 9 N -0.57 -11.58 5.09 -10.96 -0.06 -11.64 16 10 C 0.42 8.24 6.29 -10.99 -0.07 8.17 16 11 O -0.56 -13.90 16.01 5.55 0.09 -13.81 16 12 C 0.07 1.07 5.63 -5.19 -0.03 1.04 16 13 N -0.42 -7.04 2.32 -115.37 -0.27 -7.31 16 14 C 0.17 2.89 8.37 -88.17 -0.74 2.15 16 15 S -0.02 -0.32 25.82 -107.50 -2.78 -3.09 16 16 N -0.24 -4.50 12.22 30.71 0.38 -4.12 16 17 N -0.28 -5.04 12.02 32.59 0.39 -4.65 16 18 C 0.24 4.10 7.69 -153.75 -1.18 2.91 16 19 C -0.01 -0.17 5.86 -104.97 -0.62 -0.78 16 20 C -0.06 -0.73 9.70 -39.19 -0.38 -1.11 16 21 C -0.11 -1.15 9.81 -39.60 -0.39 -1.53 16 22 C -0.02 -0.25 6.32 -39.41 -0.25 -0.50 16 23 Cl -0.07 -0.70 28.95 -51.86 -1.50 -2.20 16 24 C -0.10 -1.27 9.81 -39.61 -0.39 -1.66 16 25 C -0.09 -1.27 8.62 -39.19 -0.34 -1.60 16 26 H 0.28 6.89 8.31 -40.82 -0.34 6.55 16 27 H 0.37 6.48 5.76 -40.82 -0.24 6.24 16 28 H 0.12 1.40 5.99 -51.93 -0.31 1.08 16 29 H 0.13 1.47 7.92 -51.93 -0.41 1.06 16 30 H 0.12 1.77 9.55 96.90 0.93 2.69 16 31 H 0.15 1.57 7.98 -52.49 -0.42 1.15 16 32 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 33 H 0.14 1.59 8.06 -52.49 -0.42 1.16 16 34 H 0.14 2.15 3.94 -52.49 -0.21 1.95 16 LS Contribution 331.59 15.07 5.00 5.00 Total: -1.00 -31.42 331.59 -8.37 -39.80 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -1.06 Total: 11.94 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -4.63 Total: 0.13 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: 1.22 Total: -50.14 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: 0.09 Total: -13.81 kcal Atomic # 14 Polarization: 17.10 SS G_CDS: -4.71 Total: 12.38 kcal Atomic # 16 Polarization: -0.32 SS G_CDS: -2.78 Total: -3.09 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.50 Total: -2.20 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.42 -8.37 -39.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174156983.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.603 kcal (2) G-P(sol) polarization free energy of solvation -31.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds