Wall clock time and date at job start Tue Mar 31 2020 21:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86801 * 119.99799 * 2 1 4 4 H 1.48503 * 109.47171 * 269.99756 * 3 2 1 5 5 H 1.48497 * 109.46933 * 30.00052 * 3 2 1 6 6 H 1.48500 * 109.47124 * 149.99876 * 3 2 1 7 7 C 1.38954 * 120.00204 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99924 * 0.02562 * 7 2 1 9 9 N 1.37096 * 119.99920 * 179.97438 * 7 2 1 10 10 C 1.34773 * 119.99870 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00236 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00026 * 180.02562 * 10 9 7 13 13 N 1.46497 * 109.47217 * 179.97438 * 12 10 9 14 14 C 1.36584 * 127.17329 * 87.97591 * 13 12 10 15 15 S 1.76205 * 126.38128 * 359.94601 * 14 13 12 16 16 N 1.31432 * 107.23506 * 179.97438 * 14 13 12 17 17 N 1.28510 * 110.08220 * 0.02562 * 16 14 13 18 18 C 1.31268 * 109.96427 * 359.97438 * 17 16 14 19 19 C 1.47828 * 126.46469 * 180.02562 * 18 17 16 20 20 C 1.39578 * 120.13275 * 19.78659 * 19 18 17 21 21 C 1.37943 * 119.86809 * 179.73979 * 20 19 18 22 22 C 1.38474 * 120.12519 * 0.53512 * 21 20 19 23 23 Cl 1.73603 * 119.86218 * 179.69508 * 22 21 20 24 24 C 1.38472 * 120.27220 * 359.71869 * 22 21 20 25 25 C 1.37936 * 120.12824 * 0.02562 * 24 22 21 26 26 H 0.96996 * 120.00488 * 0.02562 * 1 2 3 27 27 H 0.97001 * 120.00300 * 0.02562 * 9 7 2 28 28 H 1.08999 * 109.47110 * 60.00520 * 12 10 9 29 29 H 1.08996 * 109.47317 * 300.00198 * 12 10 9 30 30 H 1.41000 * 99.99889 * 270.01838 * 15 14 13 31 31 H 1.08001 * 120.06561 * 359.97438 * 20 19 18 32 32 H 1.07995 * 119.93469 * 180.24790 * 21 20 19 33 33 H 1.07996 * 119.93768 * 180.02562 * 24 22 21 34 34 H 1.07999 * 120.06591 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4455 2.6526 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 1.4690 -2.1386 0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3704 0.0011 11 8 3.4474 -3.4209 0.0020 12 6 5.5608 -2.3704 0.0011 13 7 6.0492 -3.7516 0.0029 14 6 6.2881 -4.5439 -1.0837 15 16 6.0642 -4.0962 -2.7731 16 7 6.7154 -5.7027 -0.6342 17 7 6.7591 -5.6890 0.6501 18 6 6.3631 -4.5209 1.0995 19 6 6.2718 -4.1098 2.5165 20 6 6.9878 -4.8019 3.4945 21 6 6.9029 -4.4102 4.8144 22 6 6.1005 -3.3395 5.1713 23 17 5.9924 -2.8573 6.8355 24 6 5.3836 -2.6522 4.2063 25 6 5.4647 -3.0314 2.8826 26 1 -0.4851 0.8400 -0.0004 27 1 3.8649 -0.3632 -0.0004 28 1 5.9241 -1.8558 0.8906 29 1 5.9241 -1.8574 -0.8893 30 1 4.7250 -4.4971 -2.9573 31 1 7.6101 -5.6401 3.2178 32 1 7.4596 -4.9425 5.5714 33 1 4.7598 -1.8177 4.4907 34 1 4.9055 -2.4944 2.1307 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174156983.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:47 Heat of formation + Delta-G solvation = 59.035001 kcal Electronic energy + Delta-G solvation = -23989.673326 eV Core-core repulsion = 20269.004904 eV Total energy + Delta-G solvation = -3720.668422 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.034 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.16518 -40.64620 -40.24524 -37.57458 -36.54544 -35.88151 -33.92921 -33.53619 -32.29384 -30.41371 -30.08587 -26.73834 -24.84675 -24.60749 -23.33070 -22.39037 -21.59254 -20.70371 -19.32423 -18.48596 -18.34601 -17.92318 -17.29316 -16.99785 -16.70975 -16.52476 -16.12740 -15.62724 -15.24996 -15.17003 -14.72241 -14.67164 -14.60927 -14.32745 -13.83465 -13.24154 -13.05776 -12.92008 -12.86687 -12.67640 -12.52466 -12.49151 -12.12703 -11.98768 -11.90039 -11.76625 -11.64302 -10.90064 -10.66022 -10.40853 -10.23919 -9.55333 -9.50024 -8.50065 -6.14664 -0.67950 -0.11620 0.12293 0.39857 0.99444 1.05413 1.27168 1.31793 1.33437 1.44277 1.61767 1.63569 2.18278 2.44961 2.55375 2.89000 3.02921 3.38486 3.48929 3.67632 3.77852 3.86406 3.92310 4.06057 4.12555 4.39690 4.45773 4.59021 4.80939 4.89623 5.04353 5.21662 5.30488 5.42889 5.52394 5.78820 6.39968 6.70670 7.16986 7.21191 7.66429 8.65956 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.007566 B = 0.005194 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3699.926968 B = 5389.859813 C = 8554.902456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.004 4.004 3 Si 0.956 3.044 4 H -0.254 1.254 5 H -0.276 1.276 6 H -0.220 1.220 7 C -0.330 4.330 8 H 0.056 0.944 9 N -0.562 5.562 10 C 0.430 3.570 11 O -0.615 6.615 12 C 0.079 3.921 13 N -0.431 5.431 14 C 0.153 3.847 15 S 0.023 5.977 16 N -0.267 5.267 17 N -0.300 5.300 18 C 0.244 3.756 19 C -0.033 4.033 20 C -0.057 4.057 21 C -0.098 4.098 22 C -0.020 4.020 23 Cl -0.055 7.055 24 C -0.107 4.107 25 C -0.101 4.101 26 H 0.283 0.717 27 H 0.396 0.604 28 H 0.157 0.843 29 H 0.166 0.834 30 H 0.106 0.894 31 H 0.157 0.843 32 H 0.172 0.828 33 H 0.152 0.848 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.105 1.757 6.955 19.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.204 4.204 3 Si 0.775 3.225 4 H -0.179 1.179 5 H -0.201 1.201 6 H -0.142 1.142 7 C -0.459 4.459 8 H 0.074 0.926 9 N -0.202 5.202 10 C 0.216 3.784 11 O -0.501 6.501 12 C -0.047 4.047 13 N -0.121 5.121 14 C -0.222 4.222 15 S 0.172 5.828 16 N -0.111 5.111 17 N -0.143 5.143 18 C -0.021 4.021 19 C -0.036 4.036 20 C -0.077 4.077 21 C -0.116 4.116 22 C -0.047 4.047 23 Cl -0.026 7.026 24 C -0.125 4.125 25 C -0.121 4.121 26 H 0.092 0.908 27 H 0.233 0.767 28 H 0.174 0.826 29 H 0.183 0.817 30 H 0.070 0.930 31 H 0.174 0.826 32 H 0.190 0.810 33 H 0.170 0.830 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 18.092 0.126 6.168 19.114 hybrid contribution -1.958 1.479 0.686 2.548 sum 16.133 1.605 6.854 17.602 Atomic orbital electron populations 1.69784 1.08362 1.29730 1.48264 1.26119 0.96346 1.02764 0.95211 0.85502 0.80045 0.76602 0.80379 1.17859 1.20142 1.14243 1.18898 0.80714 0.95016 1.51308 0.92601 1.41832 1.06101 1.07048 1.65212 1.20366 0.89464 0.84273 0.84254 1.90659 1.70506 1.32691 1.56257 1.22270 0.92006 0.79622 1.10774 1.46600 1.46240 1.13688 1.05572 1.26296 1.08740 0.91467 0.95735 1.86425 1.19788 1.80906 0.95668 1.74655 1.16413 1.16882 1.03198 1.74299 1.20419 1.16455 1.03134 1.23279 1.00281 0.88541 0.90047 1.17675 1.01321 0.98275 0.86367 1.21308 0.96964 0.98444 0.90978 1.21290 0.98353 0.95528 0.96466 1.21235 0.99713 0.97627 0.86153 1.98391 1.97227 1.91153 1.15786 1.21102 0.99445 1.01055 0.90904 1.21419 0.97178 0.96266 0.97214 0.90772 0.76739 0.82613 0.81695 0.93013 0.82554 0.81020 0.83018 0.85785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.59 13.96 21.66 0.30 -51.29 16 2 C 0.00 -0.18 5.50 84.93 0.47 0.29 16 3 Si 0.96 33.67 27.74 68.60 1.90 35.57 16 4 H -0.25 -8.52 7.11 99.48 0.71 -7.82 16 5 H -0.28 -9.95 7.11 99.48 0.71 -9.24 16 6 H -0.22 -6.02 6.52 99.48 0.65 -5.37 16 7 C -0.33 -17.38 10.16 84.04 0.85 -16.52 16 8 H 0.06 3.62 7.39 -2.91 -0.02 3.59 16 9 N -0.56 -22.60 5.09 -306.99 -1.56 -24.17 16 10 C 0.43 16.86 6.29 87.66 0.55 17.41 16 11 O -0.62 -31.42 16.01 -3.07 -0.05 -31.47 16 12 C 0.08 2.14 5.63 85.63 0.48 2.62 16 13 N -0.43 -13.86 2.32 -518.91 -1.21 -15.07 16 14 C 0.15 5.14 8.37 179.49 1.50 6.64 16 15 S 0.02 0.60 25.82 -56.49 -1.46 -0.86 16 16 N -0.27 -9.98 12.22 -56.74 -0.69 -10.68 16 17 N -0.30 -10.96 12.02 -50.80 -0.61 -11.57 16 18 C 0.24 8.10 7.69 136.20 1.05 9.15 16 19 C -0.03 -0.92 5.86 -20.09 -0.12 -1.04 16 20 C -0.06 -1.23 9.70 22.52 0.22 -1.01 16 21 C -0.10 -1.73 9.81 22.26 0.22 -1.51 16 22 C -0.02 -0.39 6.32 22.38 0.14 -0.25 16 23 Cl -0.05 -0.97 28.95 -2.72 -0.08 -1.05 16 24 C -0.11 -2.41 9.81 22.25 0.22 -2.19 16 25 C -0.10 -2.70 8.62 22.52 0.19 -2.51 16 26 H 0.28 14.44 8.31 -92.71 -0.77 13.67 16 27 H 0.40 12.43 5.76 -92.71 -0.53 11.89 16 28 H 0.16 3.13 5.99 -2.39 -0.01 3.12 16 29 H 0.17 3.21 7.92 -2.39 -0.02 3.19 16 30 H 0.11 3.11 9.55 73.80 0.70 3.82 16 31 H 0.16 3.06 7.98 -2.91 -0.02 3.03 16 32 H 0.17 1.97 8.06 -2.91 -0.02 1.94 16 33 H 0.15 3.08 8.06 -2.91 -0.02 3.05 16 34 H 0.12 3.68 3.94 -2.91 -0.01 3.67 16 Total: -1.00 -74.60 331.59 3.65 -70.95 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: 1.33 Total: 28.55 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: 5.78 Total: 11.07 kcal Atomic # 7 Polarization: -108.99 SS G_CDS: -3.77 Total: -112.76 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -0.05 Total: -31.47 kcal Atomic # 14 Polarization: 33.67 SS G_CDS: 1.90 Total: 35.57 kcal Atomic # 16 Polarization: 0.60 SS G_CDS: -1.46 Total: -0.86 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -0.08 Total: -1.05 kcal Total: -74.60 3.65 -70.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174156983.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.982 kcal (2) G-P(sol) polarization free energy of solvation -74.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds