Wall clock time and date at job start Tue Mar 31 2020 21:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53008 * 109.47121 * 70.68669 * 3 2 1 5 5 N 1.46899 * 109.46933 * 182.39009 * 4 3 2 6 6 C 1.46903 * 110.99637 * 199.88167 * 5 4 3 7 7 C 1.50702 * 109.47016 * 66.04911 * 6 5 4 8 8 H 1.07999 * 120.00090 * 0.02562 * 7 6 5 9 9 C 1.37873 * 119.99862 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99853 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00096 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.47089 * 89.99913 * 11 9 7 13 13 H 1.48505 * 109.47179 * 210.00000 * 11 9 7 14 14 H 1.48502 * 109.47433 * 330.00124 * 11 9 7 15 15 C 1.46897 * 110.99650 * 75.93222 * 5 4 3 16 16 C 1.50705 * 109.46913 * 199.55092 * 15 5 4 17 17 C 1.38182 * 120.02807 * 254.76103 * 16 15 5 18 18 C 1.38231 * 120.07485 * 180.29897 * 17 16 15 19 19 C 1.38292 * 120.11626 * 359.67699 * 18 17 16 20 20 C 1.38188 * 120.04570 * 0.02562 * 19 18 17 21 21 Br 1.89097 * 120.03707 * 180.02562 * 20 19 18 22 22 C 1.38676 * 120.01938 * 74.44152 * 16 15 5 23 23 O 1.35921 * 120.06270 * 359.97438 * 22 16 15 24 24 H 1.08996 * 109.47648 * 310.68296 * 3 2 1 25 25 H 1.09008 * 109.46852 * 190.68002 * 3 2 1 26 26 H 1.09001 * 109.46625 * 62.39031 * 4 3 2 27 27 H 1.08999 * 109.46879 * 302.39016 * 4 3 2 28 28 H 1.09008 * 109.46727 * 186.04810 * 6 5 4 29 29 H 1.09002 * 109.47124 * 306.04867 * 6 5 4 30 30 H 0.96996 * 119.99665 * 179.97438 * 10 9 7 31 31 H 1.09001 * 109.47227 * 79.55595 * 15 5 4 32 32 H 1.09001 * 109.47348 * 319.55368 * 15 5 4 33 33 H 1.08002 * 119.96254 * 359.97438 * 17 16 15 34 34 H 1.08004 * 119.94661 * 179.70507 * 18 17 16 35 35 H 1.08008 * 119.97654 * 180.02562 * 19 18 17 36 36 H 0.96694 * 114.00301 * 264.76066 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1182 -0.4762 -1.3614 5 7 4.5861 -0.5302 -1.3426 6 6 5.1308 -0.5172 -2.7069 7 6 4.8291 0.8092 -3.3556 8 1 4.2873 1.5668 -2.8090 9 6 5.2456 1.0557 -4.6466 10 7 4.9827 2.2134 -5.2125 11 14 6.1846 -0.2539 -5.5913 12 1 5.2258 -1.1149 -6.3294 13 1 7.1083 0.3972 -6.5547 14 1 6.9661 -1.0854 -4.6409 15 6 5.0602 -1.7041 -0.5977 16 6 6.4938 -1.4916 -0.1845 17 6 7.5093 -2.1586 -0.8428 18 6 8.8241 -1.9691 -0.4606 19 6 9.1278 -1.1066 0.5769 20 6 8.1166 -0.4324 1.2345 21 35 8.5321 0.7475 2.6527 22 6 6.7953 -0.6213 0.8522 23 8 5.7988 0.0413 1.4966 24 1 2.9717 -0.6690 0.7793 25 1 2.9709 1.0108 0.1905 26 1 2.7900 0.2173 -2.1356 27 1 2.7208 -1.4693 -1.5708 28 1 6.2100 -0.6659 -2.6686 29 1 4.6740 -1.3182 -3.2881 30 1 5.2761 2.3870 -6.1206 31 1 4.9920 -2.5884 -1.2313 32 1 4.4433 -1.8447 0.2899 33 1 7.2750 -2.8328 -1.6534 34 1 9.6158 -2.4951 -0.9734 35 1 10.1559 -0.9599 0.8734 36 1 5.6329 0.9306 1.1553 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180042333.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:33 Heat of formation + Delta-G solvation = 17.816706 kcal Electronic energy + Delta-G solvation = -21043.016056 eV Core-core repulsion = 17766.920062 eV Total energy + Delta-G solvation = -3276.095995 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.037 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.93670 -37.49433 -36.51237 -36.10733 -32.82505 -32.55117 -31.27823 -30.28796 -28.81175 -27.75087 -25.30423 -22.95552 -22.33386 -21.53069 -20.04922 -18.13928 -17.29378 -16.98818 -16.17181 -15.95058 -15.25329 -14.89857 -14.72365 -14.49046 -13.91195 -13.70037 -13.40630 -13.10945 -12.71128 -12.59971 -12.41058 -12.24307 -12.12114 -11.90009 -11.83460 -11.21184 -11.18184 -10.85087 -10.81029 -10.61866 -10.39786 -10.23079 -10.19110 -9.93785 -9.38647 -8.68096 -8.63898 -8.47887 -7.69035 -6.14662 -4.12999 1.12208 1.26736 1.67658 2.96205 3.01511 3.20347 3.28100 3.29467 3.51099 4.16133 4.32914 4.34510 4.72211 4.81270 5.03332 5.18112 5.23244 5.33018 5.33773 5.43053 5.52514 5.63979 5.79886 5.81995 5.98319 6.11018 6.18447 6.33808 6.41482 6.51834 6.70470 6.73585 6.79406 7.44414 7.67551 7.77004 7.77622 7.82926 8.50976 8.92630 9.46542 10.98072 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.009581 B = 0.004837 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2921.891581 B = 5786.888807 C = 7482.505805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C 0.218 3.782 3 C -0.025 4.025 4 C 0.064 3.936 5 N -0.519 5.519 6 C 0.162 3.838 7 C -0.513 4.513 8 H 0.083 0.917 9 C 0.071 3.929 10 N -0.896 5.896 11 Si 0.871 3.129 12 H -0.278 1.278 13 H -0.286 1.286 14 H -0.266 1.266 15 C 0.089 3.911 16 C -0.080 4.080 17 C -0.082 4.082 18 C -0.127 4.127 19 C -0.084 4.084 20 C -0.125 4.125 21 Br -0.051 7.051 22 C 0.164 3.836 23 O -0.484 6.484 24 H 0.105 0.895 25 H 0.116 0.884 26 H 0.103 0.897 27 H 0.031 0.969 28 H 0.034 0.966 29 H -0.014 1.014 30 H 0.264 0.736 31 H 0.040 0.960 32 H 0.084 0.916 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.221 -7.416 14.375 18.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.133 5.133 2 C -0.100 4.100 3 C -0.066 4.066 4 C -0.065 4.065 5 N -0.242 5.242 6 C 0.036 3.964 7 C -0.551 4.551 8 H 0.101 0.899 9 C -0.131 4.131 10 N -0.535 5.535 11 Si 0.698 3.302 12 H -0.204 1.204 13 H -0.212 1.212 14 H -0.191 1.191 15 C -0.039 4.039 16 C -0.082 4.082 17 C -0.101 4.101 18 C -0.146 4.146 19 C -0.104 4.104 20 C -0.205 4.205 21 Br 0.035 6.965 22 C 0.117 3.883 23 O -0.296 6.296 24 H 0.123 0.877 25 H 0.134 0.866 26 H 0.121 0.879 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.003 0.997 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.102 0.898 33 H 0.146 0.854 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 7.815 -6.937 15.305 18.532 hybrid contribution 0.766 -1.090 -1.767 2.213 sum 8.581 -8.027 13.538 17.926 Atomic orbital electron populations 1.81171 1.13300 1.09671 1.09177 1.29368 0.95450 0.92519 0.92635 1.19389 0.80405 1.05860 1.00935 1.21936 0.88498 1.00570 0.95522 1.61829 1.06746 1.37317 1.18355 1.20250 0.95364 0.97399 0.83405 1.20980 1.36923 0.99034 0.98175 0.89916 1.24876 0.95623 0.95179 0.97421 1.69880 1.46670 1.22501 1.14430 0.86934 0.80519 0.82381 0.80347 1.20363 1.21155 1.19087 1.21023 0.91360 0.92953 0.98529 1.20059 0.96549 0.97680 0.93919 1.21148 0.92226 0.98548 0.98228 1.21066 0.96712 0.99369 0.97494 1.20931 0.98227 0.95779 0.95452 1.22298 0.95453 1.02985 0.99733 1.96661 1.94200 1.61168 1.44520 1.17816 0.85417 0.94080 0.91030 1.84650 1.52728 1.33368 1.58809 0.87714 0.86642 0.87921 0.95043 0.94823 0.99663 0.92577 0.94177 0.89787 0.85407 0.85288 0.85190 0.74134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.65 18.54 42.15 0.78 -6.86 16 2 C 0.22 3.08 15.43 -20.76 -0.32 2.76 16 3 C -0.03 -0.30 5.84 -29.52 -0.17 -0.47 16 4 C 0.06 0.96 4.74 -3.82 -0.02 0.94 16 5 N -0.52 -8.45 4.35 -237.50 -1.03 -9.48 16 6 C 0.16 3.36 3.61 -4.97 -0.02 3.34 16 7 C -0.51 -13.01 8.78 -34.44 -0.30 -13.31 16 8 H 0.08 2.27 7.56 -52.49 -0.40 1.87 16 9 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 10 N -0.90 -26.01 13.96 55.43 0.77 -25.23 16 11 Si 0.87 20.11 27.47 -169.99 -4.67 15.45 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 13 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.27 -5.79 6.54 56.52 0.37 -5.42 16 15 C 0.09 1.22 4.55 -4.97 -0.02 1.19 16 16 C -0.08 -1.11 4.82 -104.48 -0.50 -1.61 16 17 C -0.08 -1.07 9.00 -39.60 -0.36 -1.43 16 18 C -0.13 -1.49 10.04 -39.56 -0.40 -1.88 16 19 C -0.08 -0.99 9.78 -39.58 -0.39 -1.38 16 20 C -0.12 -1.62 6.24 -39.38 -0.25 -1.86 16 21 Br -0.05 -0.60 33.16 -68.01 -2.26 -2.85 16 22 C 0.16 2.22 6.67 -39.20 -0.26 1.96 16 23 O -0.48 -5.89 12.18 -19.49 -0.24 -6.13 16 24 H 0.10 1.03 6.71 -51.93 -0.35 0.68 16 25 H 0.12 1.25 8.14 -51.92 -0.42 0.83 16 26 H 0.10 1.86 6.58 -51.93 -0.34 1.52 16 27 H 0.03 0.45 8.00 -51.93 -0.42 0.03 16 28 H 0.03 0.72 5.94 -51.92 -0.31 0.42 16 29 H -0.01 -0.30 7.55 -51.93 -0.39 -0.69 16 30 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.04 0.54 7.81 -51.93 -0.41 0.13 16 32 H 0.08 1.00 6.36 -51.93 -0.33 0.67 16 33 H 0.13 1.53 8.00 -52.49 -0.42 1.11 16 34 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 35 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 36 H 0.40 4.20 9.06 45.56 0.41 4.61 16 LS Contribution 331.52 15.07 5.00 5.00 Total: -1.00 -29.89 331.52 -8.13 -38.02 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -3.38 Total: 2.04 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -3.10 Total: -9.93 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 0.52 Total: -41.58 kcal Atomic # 8 Polarization: -5.89 SS G_CDS: -0.24 Total: -6.13 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -4.67 Total: 15.45 kcal Atomic # 35 Polarization: -0.60 SS G_CDS: -2.26 Total: -2.85 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.89 -8.13 -38.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180042333.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.837 kcal (2) G-P(sol) polarization free energy of solvation -29.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds