Wall clock time and date at job start Tue Mar 31 2020 21:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53008 * 109.47121 * 70.68669 * 3 2 1 5 5 N 1.46899 * 109.46933 * 182.39009 * 4 3 2 6 6 C 1.46903 * 110.99637 * 199.88167 * 5 4 3 7 7 C 1.50702 * 109.47016 * 66.04911 * 6 5 4 8 8 H 1.07999 * 120.00090 * 0.02562 * 7 6 5 9 9 C 1.37873 * 119.99862 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99853 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00096 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.47089 * 89.99913 * 11 9 7 13 13 H 1.48505 * 109.47179 * 210.00000 * 11 9 7 14 14 H 1.48502 * 109.47433 * 330.00124 * 11 9 7 15 15 C 1.46897 * 110.99650 * 75.93222 * 5 4 3 16 16 C 1.50705 * 109.46913 * 199.55092 * 15 5 4 17 17 C 1.38182 * 120.02807 * 254.76103 * 16 15 5 18 18 C 1.38231 * 120.07485 * 180.29897 * 17 16 15 19 19 C 1.38292 * 120.11626 * 359.67699 * 18 17 16 20 20 C 1.38188 * 120.04570 * 0.02562 * 19 18 17 21 21 Br 1.89097 * 120.03707 * 180.02562 * 20 19 18 22 22 C 1.38676 * 120.01938 * 74.44152 * 16 15 5 23 23 O 1.35921 * 120.06270 * 359.97438 * 22 16 15 24 24 H 1.08996 * 109.47648 * 310.68296 * 3 2 1 25 25 H 1.09008 * 109.46852 * 190.68002 * 3 2 1 26 26 H 1.09001 * 109.46625 * 62.39031 * 4 3 2 27 27 H 1.08999 * 109.46879 * 302.39016 * 4 3 2 28 28 H 1.09008 * 109.46727 * 186.04810 * 6 5 4 29 29 H 1.09002 * 109.47124 * 306.04867 * 6 5 4 30 30 H 0.96996 * 119.99665 * 179.97438 * 10 9 7 31 31 H 1.09001 * 109.47227 * 79.55595 * 15 5 4 32 32 H 1.09001 * 109.47348 * 319.55368 * 15 5 4 33 33 H 1.08002 * 119.96254 * 359.97438 * 17 16 15 34 34 H 1.08004 * 119.94661 * 179.70507 * 18 17 16 35 35 H 1.08008 * 119.97654 * 180.02562 * 19 18 17 36 36 H 0.96694 * 114.00301 * 264.76066 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1182 -0.4762 -1.3614 5 7 4.5861 -0.5302 -1.3426 6 6 5.1308 -0.5172 -2.7069 7 6 4.8291 0.8092 -3.3556 8 1 4.2873 1.5668 -2.8090 9 6 5.2456 1.0557 -4.6466 10 7 4.9827 2.2134 -5.2125 11 14 6.1846 -0.2539 -5.5913 12 1 5.2258 -1.1149 -6.3294 13 1 7.1083 0.3972 -6.5547 14 1 6.9661 -1.0854 -4.6409 15 6 5.0602 -1.7041 -0.5977 16 6 6.4938 -1.4916 -0.1845 17 6 7.5093 -2.1586 -0.8428 18 6 8.8241 -1.9691 -0.4606 19 6 9.1278 -1.1066 0.5769 20 6 8.1166 -0.4324 1.2345 21 35 8.5321 0.7475 2.6527 22 6 6.7953 -0.6213 0.8522 23 8 5.7988 0.0413 1.4966 24 1 2.9717 -0.6690 0.7793 25 1 2.9709 1.0108 0.1905 26 1 2.7900 0.2173 -2.1356 27 1 2.7208 -1.4693 -1.5708 28 1 6.2100 -0.6659 -2.6686 29 1 4.6740 -1.3182 -3.2881 30 1 5.2761 2.3870 -6.1206 31 1 4.9920 -2.5884 -1.2313 32 1 4.4433 -1.8447 0.2899 33 1 7.2750 -2.8328 -1.6534 34 1 9.6158 -2.4951 -0.9734 35 1 10.1559 -0.9599 0.8734 36 1 5.6329 0.9306 1.1553 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180042333.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:32 Heat of formation + Delta-G solvation = -1.882187 kcal Electronic energy + Delta-G solvation = -21043.870264 eV Core-core repulsion = 17766.920062 eV Total energy + Delta-G solvation = -3276.950203 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.037 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.90241 -38.73328 -37.46147 -37.32579 -34.67864 -33.62766 -32.37017 -31.54158 -29.73575 -29.25413 -26.48553 -24.50426 -23.27047 -22.67617 -21.35063 -19.08645 -18.91970 -18.41614 -17.17002 -16.92686 -16.40200 -16.33335 -15.99391 -15.72754 -15.19479 -14.79390 -14.69394 -14.35794 -14.23424 -13.85017 -13.57567 -13.41155 -13.37257 -13.21301 -12.78426 -12.64285 -12.59982 -12.25753 -11.94299 -11.82979 -11.70452 -11.48136 -11.40778 -11.23326 -11.09663 -10.71401 -9.60679 -9.41397 -9.01687 -8.20332 -6.21523 0.17916 0.33280 0.74719 1.38634 1.40651 1.49477 1.79113 1.87078 2.40039 2.55702 3.01769 3.15496 3.41865 3.63110 3.82273 4.06841 4.20983 4.33024 4.36032 4.45359 4.50259 4.61990 4.76564 4.84921 4.97560 4.99873 5.07185 5.21593 5.23178 5.28303 5.41625 5.55609 5.63953 5.83849 6.06089 6.36931 6.63481 6.70469 6.87050 6.88389 7.41904 8.95660 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.009581 B = 0.004837 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2921.891581 B = 5786.888807 C = 7482.505805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C 0.241 3.759 3 C -0.010 4.010 4 C 0.067 3.933 5 N -0.520 5.520 6 C 0.173 3.827 7 C -0.504 4.504 8 H 0.048 0.952 9 C 0.008 3.992 10 N -0.950 5.950 11 Si 0.932 3.068 12 H -0.274 1.274 13 H -0.291 1.291 14 H -0.239 1.239 15 C 0.092 3.908 16 C -0.099 4.099 17 C -0.094 4.094 18 C -0.127 4.127 19 C -0.086 4.086 20 C -0.140 4.140 21 Br -0.046 7.046 22 C 0.154 3.846 23 O -0.484 6.484 24 H 0.136 0.864 25 H 0.128 0.872 26 H 0.064 0.936 27 H 0.041 0.959 28 H 0.035 0.965 29 H -0.014 1.014 30 H 0.262 0.738 31 H 0.047 0.953 32 H 0.105 0.895 33 H 0.137 0.863 34 H 0.155 0.845 35 H 0.149 0.851 36 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.743 -9.425 15.455 21.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.181 5.181 2 C -0.075 4.075 3 C -0.050 4.050 4 C -0.063 4.063 5 N -0.243 5.243 6 C 0.046 3.954 7 C -0.542 4.542 8 H 0.067 0.933 9 C -0.189 4.189 10 N -0.591 5.591 11 Si 0.757 3.243 12 H -0.200 1.200 13 H -0.217 1.217 14 H -0.162 1.162 15 C -0.035 4.035 16 C -0.101 4.101 17 C -0.113 4.113 18 C -0.146 4.146 19 C -0.106 4.106 20 C -0.220 4.220 21 Br 0.039 6.961 22 C 0.106 3.894 23 O -0.297 6.297 24 H 0.154 0.846 25 H 0.146 0.854 26 H 0.083 0.917 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.004 0.996 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.123 0.877 33 H 0.155 0.845 34 H 0.173 0.827 35 H 0.167 0.833 36 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 9.335 -8.966 16.420 20.908 hybrid contribution 0.298 -0.426 -2.012 2.078 sum 9.633 -9.392 14.408 19.712 Atomic orbital electron populations 1.81197 1.14823 1.11407 1.10705 1.29686 0.95650 0.91020 0.91189 1.19386 0.78657 1.07244 0.99737 1.21827 0.87950 1.00227 0.96294 1.61682 1.07224 1.39444 1.15957 1.19960 0.95537 0.94430 0.85521 1.21292 1.34863 1.00210 0.97855 0.93334 1.25745 0.97092 0.97220 0.98831 1.70047 1.49114 1.25076 1.14878 0.85937 0.79327 0.79882 0.79187 1.19976 1.21716 1.16241 1.21078 0.91864 0.91693 0.98840 1.20153 0.96715 0.98620 0.94608 1.21399 0.92722 0.98732 0.98483 1.21388 0.96975 0.99017 0.97230 1.21246 0.98974 0.95214 0.95145 1.22507 0.95733 1.03523 1.00262 1.96659 1.94114 1.61030 1.44259 1.17943 0.85862 0.94321 0.91229 1.84624 1.52508 1.33745 1.58806 0.84604 0.85428 0.91718 0.94041 0.94677 0.99612 0.92871 0.93494 0.87696 0.84516 0.82712 0.83348 0.73484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -16.64 18.54 20.01 0.37 -16.27 16 2 C 0.24 6.51 15.43 89.44 1.38 7.89 16 3 C -0.01 -0.21 5.84 28.79 0.17 -0.05 16 4 C 0.07 1.91 4.74 86.31 0.41 2.32 16 5 N -0.52 -16.01 4.35 -905.32 -3.93 -19.95 16 6 C 0.17 6.92 3.61 85.56 0.31 7.23 16 7 C -0.50 -25.82 8.78 25.60 0.22 -25.60 16 8 H 0.05 2.76 7.56 -2.91 -0.02 2.73 16 9 C 0.01 0.44 5.47 84.65 0.46 0.90 16 10 N -0.95 -56.78 13.96 21.45 0.30 -56.48 16 11 Si 0.93 41.02 27.47 68.60 1.88 42.90 16 12 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 13 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 14 H -0.24 -9.39 6.54 99.48 0.65 -8.74 16 15 C 0.09 2.26 4.55 85.56 0.39 2.64 16 16 C -0.10 -2.48 4.82 -19.77 -0.10 -2.58 16 17 C -0.09 -2.18 9.00 22.25 0.20 -1.98 16 18 C -0.13 -2.57 10.04 22.28 0.22 -2.35 16 19 C -0.09 -1.80 9.78 22.27 0.22 -1.59 16 20 C -0.14 -3.34 6.24 22.40 0.14 -3.20 16 21 Br -0.05 -1.00 33.16 -20.37 -0.68 -1.68 16 22 C 0.15 3.83 6.67 22.52 0.15 3.98 16 23 O -0.48 -10.75 12.18 -92.66 -1.13 -11.88 16 24 H 0.14 2.15 6.71 -2.39 -0.02 2.13 16 25 H 0.13 2.51 8.14 -2.38 -0.02 2.49 16 26 H 0.06 2.37 6.58 -2.39 -0.02 2.36 16 27 H 0.04 1.11 8.00 -2.39 -0.02 1.09 16 28 H 0.04 1.42 5.94 -2.38 -0.01 1.41 16 29 H -0.01 -0.56 7.55 -2.39 -0.02 -0.57 16 30 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 31 H 0.05 1.11 7.81 -2.39 -0.02 1.09 16 32 H 0.10 2.11 6.36 -2.39 -0.02 2.09 16 33 H 0.14 2.83 8.00 -2.91 -0.02 2.81 16 34 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 35 H 0.15 2.47 8.06 -2.91 -0.02 2.44 16 36 H 0.41 7.80 9.06 -74.06 -0.67 7.13 16 Total: -1.00 -65.71 331.52 1.39 -64.32 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: 0.39 Total: 11.39 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: 4.18 Total: -12.38 kcal Atomic # 7 Polarization: -89.43 SS G_CDS: -3.26 Total: -92.69 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: -1.13 Total: -11.88 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 1.88 Total: 42.90 kcal Atomic # 35 Polarization: -1.00 SS G_CDS: -0.68 Total: -1.68 kcal Total: -65.71 1.39 -64.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180042333.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.438 kcal (2) G-P(sol) polarization free energy of solvation -65.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds