Wall clock time and date at job start Tue Mar 31 2020 21:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36184 * 127.08092 * 2 1 4 4 N 1.30981 * 107.47043 * 179.97438 * 3 2 1 5 5 N 1.28555 * 110.02134 * 359.75392 * 4 3 2 6 6 C 1.31946 * 109.66736 * 0.41581 * 5 4 3 7 7 S 1.76202 * 126.49901 * 179.86094 * 6 5 4 8 8 C 1.76204 * 99.99893 * 4.76656 * 7 6 5 9 9 C 1.39789 * 120.03018 * 255.92792 * 8 7 6 10 10 C 1.36461 * 120.11308 * 179.70685 * 9 8 7 11 11 C 1.39674 * 120.17656 * 0.26937 * 10 9 8 12 12 N 1.38698 * 119.96809 * 179.97438 * 11 10 9 13 13 C 1.34781 * 119.99553 * 145.84858 * 12 11 10 14 14 O 1.22043 * 119.99884 * 354.74013 * 13 12 11 15 15 C 1.39852 * 119.99497 * 174.73549 * 13 12 11 16 16 H 1.07992 * 120.00532 * 5.39664 * 15 13 12 17 17 C 1.39855 * 119.99675 * 185.39297 * 15 13 12 18 18 N 1.30804 * 119.99929 * 5.40581 * 17 15 13 19 19 Si 1.86793 * 120.00198 * 185.39420 * 17 15 13 20 20 H 1.48493 * 109.47345 * 95.00159 * 19 17 15 21 21 H 1.48502 * 109.47701 * 215.00289 * 19 17 15 22 22 H 1.48508 * 109.47233 * 335.00194 * 19 17 15 23 23 C 1.39566 * 120.06071 * 0.03201 * 11 10 9 24 24 C 1.37638 * 119.88773 * 359.96722 * 23 11 10 25 25 Cl 1.73601 * 120.08693 * 180.02562 * 24 23 11 26 26 H 1.08993 * 109.46715 * 270.01667 * 1 2 3 27 27 H 1.08996 * 109.47051 * 30.02052 * 1 2 3 28 28 H 1.09003 * 109.47309 * 150.02034 * 1 2 3 29 29 H 1.07999 * 126.26563 * 0.02562 * 3 2 1 30 30 H 1.08002 * 119.94552 * 359.97438 * 9 8 7 31 31 H 1.07996 * 119.91122 * 180.29890 * 10 9 8 32 32 H 0.96994 * 120.00392 * 325.85502 * 12 11 10 33 33 H 0.97000 * 120.00080 * 180.02562 * 18 17 15 34 34 H 1.08004 * 120.05593 * 179.97438 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2862 1.0865 0.0000 4 7 3.5200 0.6469 0.0006 5 7 3.5292 -0.6387 0.0061 6 6 2.2900 -1.0917 0.0004 7 16 1.7919 -2.7818 0.0011 8 6 3.3634 -3.5638 0.1552 9 6 3.9564 -4.1678 -0.9573 10 6 5.1761 -4.7686 -0.8412 11 6 5.8348 -4.7880 0.3902 12 7 7.0742 -5.4004 0.5034 13 6 7.9981 -4.9006 1.3479 14 8 7.7813 -3.8561 1.9408 15 6 9.2051 -5.5791 1.5448 16 1 9.4342 -6.4553 0.9566 17 6 10.1154 -5.1227 2.5034 18 7 9.7944 -4.1267 3.2883 19 14 11.7895 -5.9356 2.6632 20 1 12.7872 -5.1748 1.8690 21 1 12.1993 -5.9489 4.0905 22 1 11.7132 -7.3298 2.1573 23 6 5.2467 -4.1927 1.5072 24 6 4.0165 -3.5859 1.3930 25 17 3.2805 -2.8433 2.7788 26 1 -0.3632 0.0003 1.0276 27 1 -0.3633 0.8898 -0.5141 28 1 -0.3634 -0.8902 -0.5135 29 1 1.9766 2.1211 0.0004 30 1 3.4503 -4.1550 -1.9114 31 1 5.6334 -5.2300 -1.7040 32 1 7.2760 -6.1882 -0.0252 33 1 10.4259 -3.8100 3.9529 34 1 5.7560 -4.2081 2.4595 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184523170.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:08 Heat of formation + Delta-G solvation = 70.765646 kcal Electronic energy + Delta-G solvation = -23425.013486 eV Core-core repulsion = 19704.853743 eV Total energy + Delta-G solvation = -3720.159743 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.034 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.61163 -39.38800 -37.27563 -36.00476 -34.99606 -33.64382 -32.47949 -30.51740 -30.43640 -29.16332 -27.76686 -26.66329 -23.01448 -22.45795 -22.33925 -22.03326 -20.08957 -18.19477 -17.76158 -17.07700 -16.39537 -16.31092 -15.71134 -15.49342 -14.99264 -14.87945 -14.23297 -14.04161 -13.61820 -13.49126 -13.30199 -13.21199 -12.74353 -12.55480 -12.26804 -11.50020 -11.43408 -11.33228 -11.15294 -11.08148 -10.93200 -10.72509 -10.56703 -10.39124 -10.25779 -10.21160 -9.93930 -9.41465 -8.96418 -8.44158 -7.81367 -7.65168 -7.21392 -6.47810 -5.02731 0.83505 1.69327 1.70806 1.83592 2.20297 2.55574 2.65272 2.97852 3.01568 3.09517 3.12970 3.90192 3.96823 4.34165 4.37576 4.50429 4.56176 4.75712 5.02296 5.12627 5.25013 5.47261 5.61293 5.63614 5.76276 5.83707 6.00880 6.18588 6.40669 6.57230 6.70569 6.80137 7.03802 7.15599 7.73752 7.89277 8.00437 8.70609 8.76833 9.13907 10.27880 10.47982 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.020702 B = 0.003076 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.222949 B = 9100.824979 C = 9462.583388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.470 5.470 3 C 0.143 3.857 4 N -0.287 5.287 5 N -0.265 5.265 6 C 0.140 3.860 7 S 0.101 5.899 8 C -0.194 4.194 9 C -0.017 4.017 10 C -0.190 4.190 11 C 0.254 3.746 12 N -0.692 5.692 13 C 0.536 3.464 14 O -0.561 6.561 15 C -0.533 4.533 16 H 0.072 0.928 17 C 0.087 3.913 18 N -0.738 5.738 19 Si 0.915 3.085 20 H -0.269 1.269 21 H -0.276 1.276 22 H -0.262 1.262 23 C -0.136 4.136 24 C 0.060 3.940 25 Cl -0.065 7.065 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.218 0.782 30 H 0.132 0.868 31 H 0.130 0.870 32 H 0.397 0.603 33 H 0.275 0.725 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.890 2.289 -7.102 20.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.164 5.164 3 C -0.146 4.146 4 N -0.127 5.127 5 N -0.109 5.109 6 C -0.233 4.233 7 S 0.335 5.665 8 C -0.310 4.310 9 C -0.039 4.039 10 C -0.213 4.213 11 C 0.149 3.851 12 N -0.333 5.333 13 C 0.347 3.653 14 O -0.445 6.445 15 C -0.567 4.567 16 H 0.090 0.910 17 C -0.137 4.137 18 N -0.365 5.365 19 Si 0.739 3.261 20 H -0.194 1.194 21 H -0.201 1.201 22 H -0.186 1.186 23 C -0.159 4.159 24 C 0.029 3.971 25 Cl -0.036 7.036 26 H 0.102 0.898 27 H 0.111 0.889 28 H 0.109 0.891 29 H 0.234 0.766 30 H 0.150 0.850 31 H 0.148 0.852 32 H 0.231 0.769 33 H 0.086 0.914 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -18.555 2.768 -6.408 19.825 hybrid contribution 0.764 0.120 0.028 0.773 sum -17.792 2.888 -6.380 19.120 Atomic orbital electron populations 1.22088 0.75352 1.05074 1.04289 1.46397 1.08587 1.05563 1.55895 1.26689 0.87068 0.94502 1.06374 1.74297 1.17703 1.03752 1.16980 1.75162 1.15010 1.02465 1.18295 1.27880 0.90243 0.96875 1.08277 1.83647 1.05815 0.85557 1.91467 1.21293 1.01466 1.12808 0.95419 1.20720 0.93522 0.93465 0.96146 1.20747 0.97236 1.07149 0.96205 1.18128 0.85550 0.89864 0.91525 1.44342 1.11566 1.30930 1.46442 1.16675 0.83747 0.85886 0.78997 1.90795 1.79491 1.24247 1.49936 1.19616 1.02325 1.13494 1.21265 0.91007 1.25751 0.99866 0.94076 0.94026 1.70070 1.34546 1.19121 1.12776 0.86224 0.81397 0.80213 0.78259 1.19445 1.20129 1.18607 1.21197 0.92388 1.01626 1.00731 1.20918 0.93741 0.95369 0.87035 1.98341 1.82285 1.81027 1.41936 0.89822 0.88870 0.89119 0.76591 0.84974 0.85239 0.76887 0.91371 0.82725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.46 11.08 59.85 0.66 1.12 16 2 N -0.47 -5.54 3.20 -125.31 -0.40 -5.94 16 3 C 0.14 1.79 12.78 -88.92 -1.14 0.65 16 4 N -0.29 -5.21 12.21 29.90 0.37 -4.84 16 5 N -0.27 -5.22 11.64 30.85 0.36 -4.86 16 6 C 0.14 2.19 7.98 -87.51 -0.70 1.49 16 7 S 0.10 1.38 20.73 -107.50 -2.23 -0.85 16 8 C -0.19 -3.30 5.07 -38.35 -0.19 -3.50 16 9 C -0.02 -0.26 9.75 -39.64 -0.39 -0.64 16 10 C -0.19 -3.14 9.91 -39.69 -0.39 -3.54 16 11 C 0.25 5.19 6.27 -83.72 -0.52 4.67 16 12 N -0.69 -14.95 5.28 -12.81 -0.07 -15.01 16 13 C 0.54 14.51 7.21 -15.65 -0.11 14.40 16 14 O -0.56 -17.46 12.59 4.88 0.06 -17.40 16 15 C -0.53 -14.08 9.20 -38.37 -0.35 -14.43 16 16 H 0.07 1.70 7.85 -52.49 -0.41 1.29 16 17 C 0.09 2.29 5.48 -17.38 -0.10 2.20 16 18 N -0.74 -21.06 11.74 55.54 0.65 -20.41 16 19 Si 0.92 19.01 29.56 -169.99 -5.02 13.99 16 20 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 21 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 22 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 23 C -0.14 -2.99 8.41 -39.31 -0.33 -3.32 16 24 C 0.06 1.18 6.35 -39.15 -0.25 0.93 16 25 Cl -0.07 -1.20 27.78 -51.86 -1.44 -2.64 16 26 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.09 0.49 7.86 -51.93 -0.41 0.08 16 29 H 0.22 1.55 8.06 -52.49 -0.42 1.13 16 30 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 32 H 0.40 7.07 8.76 -40.82 -0.36 6.72 16 33 H 0.28 7.10 8.30 -40.82 -0.34 6.76 16 34 H 0.16 3.90 6.46 -52.48 -0.34 3.57 16 LS Contribution 335.23 15.07 5.05 5.05 Total: -1.00 -36.87 335.23 -9.25 -46.12 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -2.77 Total: 6.76 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -3.81 Total: 0.03 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: 0.91 Total: -51.07 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: 0.06 Total: -17.40 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.02 Total: 13.99 kcal Atomic # 16 Polarization: 1.38 SS G_CDS: -2.23 Total: -0.85 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -1.44 Total: -2.64 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -36.87 -9.25 -46.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184523170.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.884 kcal (2) G-P(sol) polarization free energy of solvation -36.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds