Wall clock time and date at job start Tue Mar 31 2020 21:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36184 * 127.08092 * 2 1 4 4 N 1.30981 * 107.47043 * 179.97438 * 3 2 1 5 5 N 1.28555 * 110.02134 * 359.75392 * 4 3 2 6 6 C 1.31946 * 109.66736 * 0.41581 * 5 4 3 7 7 S 1.76202 * 126.49901 * 179.86094 * 6 5 4 8 8 C 1.76204 * 99.99893 * 4.76656 * 7 6 5 9 9 C 1.39789 * 120.03018 * 255.92792 * 8 7 6 10 10 C 1.36461 * 120.11308 * 179.70685 * 9 8 7 11 11 C 1.39674 * 120.17656 * 0.26937 * 10 9 8 12 12 N 1.38698 * 119.96809 * 179.97438 * 11 10 9 13 13 C 1.34781 * 119.99553 * 145.84858 * 12 11 10 14 14 O 1.22043 * 119.99884 * 354.74013 * 13 12 11 15 15 C 1.39852 * 119.99497 * 174.73549 * 13 12 11 16 16 H 1.07992 * 120.00532 * 5.39664 * 15 13 12 17 17 C 1.39855 * 119.99675 * 185.39297 * 15 13 12 18 18 N 1.30804 * 119.99929 * 5.40581 * 17 15 13 19 19 Si 1.86793 * 120.00198 * 185.39420 * 17 15 13 20 20 H 1.48493 * 109.47345 * 95.00159 * 19 17 15 21 21 H 1.48502 * 109.47701 * 215.00289 * 19 17 15 22 22 H 1.48508 * 109.47233 * 335.00194 * 19 17 15 23 23 C 1.39566 * 120.06071 * 0.03201 * 11 10 9 24 24 C 1.37638 * 119.88773 * 359.96722 * 23 11 10 25 25 Cl 1.73601 * 120.08693 * 180.02562 * 24 23 11 26 26 H 1.08993 * 109.46715 * 270.01667 * 1 2 3 27 27 H 1.08996 * 109.47051 * 30.02052 * 1 2 3 28 28 H 1.09003 * 109.47309 * 150.02034 * 1 2 3 29 29 H 1.07999 * 126.26563 * 0.02562 * 3 2 1 30 30 H 1.08002 * 119.94552 * 359.97438 * 9 8 7 31 31 H 1.07996 * 119.91122 * 180.29890 * 10 9 8 32 32 H 0.96994 * 120.00392 * 325.85502 * 12 11 10 33 33 H 0.97000 * 120.00080 * 180.02562 * 18 17 15 34 34 H 1.08004 * 120.05593 * 179.97438 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2862 1.0865 0.0000 4 7 3.5200 0.6469 0.0006 5 7 3.5292 -0.6387 0.0061 6 6 2.2900 -1.0917 0.0004 7 16 1.7919 -2.7818 0.0011 8 6 3.3634 -3.5638 0.1552 9 6 3.9564 -4.1678 -0.9573 10 6 5.1761 -4.7686 -0.8412 11 6 5.8348 -4.7880 0.3902 12 7 7.0742 -5.4004 0.5034 13 6 7.9981 -4.9006 1.3479 14 8 7.7813 -3.8561 1.9408 15 6 9.2051 -5.5791 1.5448 16 1 9.4342 -6.4553 0.9566 17 6 10.1154 -5.1227 2.5034 18 7 9.7944 -4.1267 3.2883 19 14 11.7895 -5.9356 2.6632 20 1 12.7872 -5.1748 1.8690 21 1 12.1993 -5.9489 4.0905 22 1 11.7132 -7.3298 2.1573 23 6 5.2467 -4.1927 1.5072 24 6 4.0165 -3.5859 1.3930 25 17 3.2805 -2.8433 2.7788 26 1 -0.3632 0.0003 1.0276 27 1 -0.3633 0.8898 -0.5141 28 1 -0.3634 -0.8902 -0.5135 29 1 1.9766 2.1211 0.0004 30 1 3.4503 -4.1550 -1.9114 31 1 5.6334 -5.2300 -1.7040 32 1 7.2760 -6.1882 -0.0252 33 1 10.4259 -3.8100 3.9529 34 1 5.7560 -4.2081 2.4595 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184523170.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:07 Heat of formation + Delta-G solvation = 46.201080 kcal Electronic energy + Delta-G solvation = -23426.078685 eV Core-core repulsion = 19704.853743 eV Total energy + Delta-G solvation = -3721.224942 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.034 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.68263 -41.02065 -39.02762 -37.52843 -35.92463 -35.42892 -34.50996 -31.94099 -31.64386 -30.79073 -28.57788 -28.43191 -24.50819 -23.76393 -23.61438 -23.18160 -21.87991 -19.62126 -19.24802 -18.44201 -17.77683 -17.65268 -17.27951 -16.63131 -16.56218 -15.87655 -15.84748 -15.65458 -15.04470 -14.77911 -14.54050 -14.29561 -14.26411 -13.89745 -13.57205 -13.22037 -12.96764 -12.76347 -12.72705 -12.62145 -12.50726 -12.18702 -12.03508 -12.01914 -11.36479 -11.28276 -11.10182 -11.00379 -10.84180 -10.05758 -9.75398 -9.05855 -8.59036 -8.45515 -7.10467 -0.45536 0.30134 0.47220 0.69786 0.88898 1.14309 1.37965 1.39095 1.56512 1.80824 1.83774 2.17813 2.27093 2.62721 2.88654 3.60706 3.71680 3.77912 3.85615 4.15313 4.26242 4.31013 4.37207 4.39468 4.65383 4.72091 4.74619 4.94274 5.01084 5.12434 5.16970 5.31209 5.55183 5.84519 5.87388 6.11441 6.22161 6.67858 7.31357 7.65425 8.32067 8.50912 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.020702 B = 0.003076 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.222949 B = 9100.824979 C = 9462.583388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.463 5.463 3 C 0.169 3.831 4 N -0.352 5.352 5 N -0.325 5.325 6 C 0.124 3.876 7 S 0.163 5.837 8 C -0.201 4.201 9 C -0.009 4.009 10 C -0.172 4.172 11 C 0.222 3.778 12 N -0.686 5.686 13 C 0.524 3.476 14 O -0.615 6.615 15 C -0.557 4.557 16 H 0.097 0.903 17 C 0.030 3.970 18 N -0.797 5.797 19 Si 1.004 2.996 20 H -0.264 1.264 21 H -0.272 1.272 22 H -0.242 1.242 23 C -0.164 4.164 24 C 0.048 3.952 25 Cl -0.065 7.065 26 H 0.096 0.904 27 H 0.130 0.870 28 H 0.099 0.901 29 H 0.268 0.732 30 H 0.178 0.822 31 H 0.167 0.833 32 H 0.414 0.586 33 H 0.280 0.720 34 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.975 1.931 -9.587 23.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.156 5.156 3 C -0.121 4.121 4 N -0.192 5.192 5 N -0.169 5.169 6 C -0.251 4.251 7 S 0.396 5.604 8 C -0.316 4.316 9 C -0.030 4.030 10 C -0.195 4.195 11 C 0.120 3.880 12 N -0.329 5.329 13 C 0.335 3.665 14 O -0.503 6.503 15 C -0.591 4.591 16 H 0.115 0.885 17 C -0.189 4.189 18 N -0.424 5.424 19 Si 0.822 3.178 20 H -0.189 1.189 21 H -0.196 1.196 22 H -0.164 1.164 23 C -0.188 4.188 24 C 0.017 3.983 25 Cl -0.036 7.036 26 H 0.115 0.885 27 H 0.148 0.852 28 H 0.118 0.882 29 H 0.284 0.716 30 H 0.196 0.804 31 H 0.185 0.815 32 H 0.251 0.749 33 H 0.090 0.910 34 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -20.712 2.376 -8.936 22.682 hybrid contribution 1.095 0.373 0.757 1.382 sum -19.617 2.749 -8.179 21.430 Atomic orbital electron populations 1.22590 0.71797 1.07463 1.05927 1.46715 1.10472 1.04079 1.54322 1.27591 0.85733 0.96380 1.02416 1.74156 1.21085 1.03637 1.20293 1.75024 1.17587 1.03646 1.20627 1.28010 0.90321 0.98304 1.08492 1.83243 1.02185 0.83781 1.91171 1.21785 1.03118 1.12055 0.94605 1.21296 0.92964 0.91481 0.97302 1.21105 0.97171 1.05797 0.95383 1.18374 0.85546 0.91261 0.92789 1.43750 1.11472 1.31652 1.46033 1.17024 0.84922 0.85408 0.79100 1.90756 1.80813 1.26550 1.52189 1.20174 1.02635 1.14377 1.21910 0.88504 1.27066 1.04650 0.94239 0.92926 1.70244 1.36630 1.21516 1.14047 0.84912 0.74752 0.79704 0.78410 1.18870 1.19635 1.16445 1.20919 0.93865 1.04326 0.99705 1.21021 0.93472 0.95522 0.88290 1.98323 1.81998 1.81046 1.42267 0.88508 0.85152 0.88214 0.71625 0.80435 0.81546 0.74868 0.90997 0.87510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.50 11.08 127.77 1.42 1.91 16 2 N -0.46 -9.59 3.20 -550.38 -1.76 -11.35 16 3 C 0.17 3.82 12.78 179.76 2.30 6.12 16 4 N -0.35 -12.73 12.21 -59.31 -0.72 -13.46 16 5 N -0.33 -12.84 11.64 -56.32 -0.66 -13.50 16 6 C 0.12 3.67 7.98 179.26 1.43 5.11 16 7 S 0.16 4.10 20.73 -56.49 -1.17 2.93 16 8 C -0.20 -6.64 5.07 23.07 0.12 -6.53 16 9 C -0.01 -0.26 9.75 22.23 0.22 -0.04 16 10 C -0.17 -5.43 9.91 22.20 0.22 -5.21 16 11 C 0.22 9.42 6.27 38.72 0.24 9.66 16 12 N -0.69 -30.76 5.28 -312.50 -1.65 -32.41 16 13 C 0.52 29.97 7.21 84.63 0.61 30.58 16 14 O -0.62 -41.29 12.59 -5.46 -0.07 -41.36 16 15 C -0.56 -30.29 9.20 23.05 0.21 -30.08 16 16 H 0.10 4.58 7.85 -2.91 -0.02 4.55 16 17 C 0.03 1.63 5.48 85.24 0.47 2.10 16 18 N -0.80 -47.97 11.74 21.80 0.26 -47.71 16 19 Si 1.00 39.40 29.56 68.60 2.03 41.42 16 20 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 21 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 22 H -0.24 -8.60 7.11 99.48 0.71 -7.89 16 23 C -0.16 -7.76 8.41 22.45 0.19 -7.57 16 24 C 0.05 1.93 6.35 22.55 0.14 2.08 16 25 Cl -0.07 -2.51 27.78 -2.72 -0.08 -2.59 16 26 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.13 0.12 8.14 -2.39 -0.02 0.11 16 28 H 0.10 0.66 7.86 -2.39 -0.02 0.64 16 29 H 0.27 2.71 8.06 -2.91 -0.02 2.69 16 30 H 0.18 3.47 8.06 -2.91 -0.02 3.45 16 31 H 0.17 3.97 8.06 -2.91 -0.02 3.95 16 32 H 0.41 14.89 8.76 -92.71 -0.81 14.08 16 33 H 0.28 15.24 8.30 -92.71 -0.77 14.47 16 34 H 0.11 6.03 6.46 -2.91 -0.02 6.01 16 Total: -1.00 -90.35 335.23 4.11 -86.24 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: 0.37 Total: 23.64 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: 7.56 Total: 8.13 kcal Atomic # 7 Polarization: -113.89 SS G_CDS: -4.54 Total: -118.43 kcal Atomic # 8 Polarization: -41.29 SS G_CDS: -0.07 Total: -41.36 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 2.03 Total: 41.42 kcal Atomic # 16 Polarization: 4.10 SS G_CDS: -1.17 Total: 2.93 kcal Atomic # 17 Polarization: -2.51 SS G_CDS: -0.08 Total: -2.59 kcal Total: -90.35 4.11 -86.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184523170.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.444 kcal (2) G-P(sol) polarization free energy of solvation -90.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds