Wall clock time and date at job start Tue Mar 31 2020 21:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30677 * 1 3 3 Si 1.86793 * 119.99911 * 2 1 4 4 H 1.48503 * 109.47030 * 270.00125 * 3 2 1 5 5 H 1.48498 * 109.47385 * 30.00113 * 3 2 1 6 6 H 1.48506 * 109.47170 * 150.00083 * 3 2 1 7 7 C 1.40044 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00161 * 179.97438 * 7 2 1 9 9 C 1.46378 * 120.00061 * 0.02562 * 7 2 1 10 10 O 1.21689 * 119.99864 * 359.97438 * 9 7 2 11 11 N 1.34775 * 119.99966 * 180.02562 * 9 7 2 12 12 C 1.46507 * 119.99996 * 179.97438 * 11 9 7 13 13 H 1.08997 * 110.64232 * 323.30142 * 12 11 9 14 14 C 1.54591 * 110.72503 * 86.44975 * 12 11 9 15 15 C 1.53990 * 105.14172 * 140.49268 * 14 12 11 16 16 N 1.47896 * 107.05655 * 1.23017 * 15 14 12 17 17 C 1.39723 * 110.99838 * 214.15524 * 16 15 14 18 18 C 1.38906 * 120.06465 * 239.59106 * 17 16 15 19 19 C 1.38100 * 119.93808 * 180.27377 * 18 17 16 20 20 C 1.38361 * 120.06200 * 0.02562 * 19 18 17 21 21 Br 1.89101 * 119.93463 * 179.97438 * 20 19 18 22 22 C 1.38356 * 120.13504 * 359.97438 * 20 19 18 23 23 C 1.38106 * 120.06127 * 0.02562 * 22 20 19 24 24 C 1.48534 * 105.82124 * 334.66509 * 16 15 14 25 25 H 0.96993 * 119.99690 * 359.97438 * 1 2 3 26 26 H 0.96997 * 120.00194 * 359.97438 * 11 9 7 27 27 H 1.09002 * 110.31183 * 21.57956 * 14 12 11 28 28 H 1.08999 * 110.39851 * 259.45661 * 14 12 11 29 29 H 1.08994 * 109.92037 * 241.87302 * 15 14 12 30 30 H 1.09004 * 109.91525 * 120.57981 * 15 14 12 31 31 H 1.07998 * 120.03031 * 0.30339 * 18 17 16 32 32 H 1.07996 * 119.97082 * 180.02562 * 19 18 17 33 33 H 1.07993 * 119.97441 * 179.97438 * 22 20 19 34 34 H 1.08005 * 120.03461 * 180.02562 * 23 22 20 35 35 H 1.08996 * 110.66764 * 157.64306 * 24 16 15 36 36 H 1.08997 * 110.66764 * 280.77871 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4382 2.6526 0.7000 6 1 3.5383 1.4401 0.7000 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9490 -3.6477 0.0016 12 6 1.2165 -4.9165 0.0022 13 1 0.3159 -4.8399 0.6113 14 6 0.8660 -5.3465 -1.4408 15 6 1.0775 -6.8715 -1.4687 16 7 1.4928 -7.2768 -0.1083 17 6 2.3971 -8.3408 -0.1570 18 6 2.0908 -9.5435 0.4669 19 6 2.9890 -10.5915 0.4220 20 6 4.1932 -10.4443 -0.2433 21 35 5.4208 -11.8815 -0.3020 22 6 4.5011 -9.2476 -0.8657 23 6 3.6068 -8.1960 -0.8240 24 6 2.1180 -6.0743 0.4994 25 1 -0.4849 0.8400 0.0004 26 1 2.9190 -3.6477 0.0020 27 1 1.5318 -4.8592 -2.1531 28 1 -0.1722 -5.1043 -1.6678 29 1 1.8578 -7.1251 -2.1861 30 1 0.1463 -7.3707 -1.7368 31 1 1.1510 -9.6590 0.9862 32 1 2.7513 -11.5270 0.9065 33 1 5.4420 -9.1353 -1.3838 34 1 3.8475 -7.2621 -1.3104 35 1 2.0972 -6.1380 1.5873 36 1 3.1392 -5.9483 0.1397 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185119649.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:07 Heat of formation + Delta-G solvation = 1.226556 kcal Electronic energy + Delta-G solvation = -20383.797692 eV Core-core repulsion = 17106.982295 eV Total energy + Delta-G solvation = -3276.815397 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.037 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.42637 -38.30080 -36.76621 -33.66701 -32.47442 -31.82893 -31.33654 -30.32640 -28.43334 -27.50244 -25.83876 -23.34232 -22.46945 -20.99171 -20.67400 -19.40005 -17.48941 -17.26950 -16.21068 -15.83726 -15.44644 -14.97671 -14.70639 -14.18351 -13.85830 -13.82585 -13.68153 -13.37184 -12.72194 -12.65026 -12.37739 -12.00470 -11.80997 -11.49670 -11.38607 -11.17269 -11.04575 -10.96386 -10.81530 -10.56844 -10.48941 -10.27649 -10.23776 -9.30182 -8.88712 -8.74483 -8.67435 -7.66780 -7.58593 -6.22095 -4.68086 0.75512 1.03962 1.35050 3.11769 3.18859 3.22007 3.28759 3.71241 4.09231 4.52597 4.53662 4.60976 4.76677 4.86000 5.02062 5.10958 5.15711 5.26719 5.31278 5.46410 5.64524 5.67404 5.72118 5.81230 5.85422 5.92849 6.07565 6.10630 6.23954 6.41350 6.50374 6.56824 6.79623 7.23339 7.40065 7.86306 8.04580 8.28504 8.99085 9.47480 10.56232 10.74516 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.031602 B = 0.002112 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.818192 B =13252.772335 C =13836.924482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.067 0.933 9 C 0.556 3.444 10 O -0.577 6.577 11 N -0.760 5.760 12 C 0.159 3.841 13 H 0.091 0.909 14 C -0.142 4.142 15 C 0.042 3.958 16 N -0.486 5.486 17 C 0.109 3.891 18 C -0.091 4.091 19 C -0.085 4.085 20 C -0.098 4.098 21 Br -0.058 7.058 22 C -0.081 4.081 23 C -0.145 4.145 24 C 0.034 3.966 25 H 0.269 0.731 26 H 0.379 0.621 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.047 0.953 30 H 0.081 0.919 31 H 0.140 0.860 32 H 0.134 0.866 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.088 0.912 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.353 -23.211 -1.389 25.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.085 0.915 9 C 0.360 3.640 10 O -0.460 6.460 11 N -0.414 5.414 12 C 0.051 3.949 13 H 0.109 0.891 14 C -0.182 4.182 15 C -0.084 4.084 16 N -0.207 5.207 17 C 0.014 3.986 18 C -0.111 4.111 19 C -0.106 4.106 20 C -0.178 4.178 21 Br 0.027 6.973 22 C -0.101 4.101 23 C -0.166 4.166 24 C -0.092 4.092 25 H 0.079 0.921 26 H 0.211 0.789 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.066 0.934 30 H 0.099 0.901 31 H 0.157 0.843 32 H 0.152 0.848 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.106 0.894 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.256 -23.788 -1.098 25.549 hybrid contribution 1.415 1.329 -0.547 2.016 sum 10.671 -22.459 -1.645 24.919 Atomic orbital electron populations 1.70017 1.07038 1.27311 1.35201 1.25703 0.94624 1.00293 0.92623 0.86377 0.80157 0.81427 0.78819 1.19765 1.20434 1.18926 1.20873 0.93556 0.89377 1.54442 0.91478 1.18218 0.87238 0.82314 0.76235 1.90607 1.14022 1.86674 1.54679 1.46165 1.08334 1.04479 1.82469 1.21297 0.95487 0.83622 0.94445 0.89142 1.22902 1.03309 0.92622 0.99372 1.23009 1.00722 0.96823 0.87853 1.62458 1.34624 1.04801 1.18861 1.19268 0.90786 0.93054 0.95496 1.21074 0.99844 0.91200 0.98973 1.21065 0.92034 0.99532 0.97934 1.21770 0.96134 0.94101 1.05774 1.96705 1.58708 1.43706 1.98150 1.20969 0.99741 0.91317 0.98101 1.21768 0.94717 0.99387 1.00725 1.23595 0.96709 0.88497 1.00406 0.92071 0.78915 0.91088 0.90472 0.93423 0.90085 0.84253 0.84776 0.85090 0.85050 0.89395 0.92915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.71 11.83 55.55 0.66 -22.06 16 2 C 0.09 2.40 5.50 -17.37 -0.10 2.31 16 3 Si 0.91 19.85 29.56 -169.99 -5.02 14.82 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 7 C -0.55 -15.06 9.54 -35.63 -0.34 -15.40 16 8 H 0.07 1.69 7.85 -52.49 -0.41 1.28 16 9 C 0.56 15.31 7.74 -12.99 -0.10 15.21 16 10 O -0.58 -18.22 14.74 5.20 0.08 -18.15 16 11 N -0.76 -16.15 5.14 -53.41 -0.27 -16.42 16 12 C 0.16 2.91 3.34 -66.07 -0.22 2.69 16 13 H 0.09 1.92 7.69 -51.93 -0.40 1.52 16 14 C -0.14 -2.35 6.67 -25.38 -0.17 -2.52 16 15 C 0.04 0.56 6.51 -2.76 -0.02 0.54 16 16 N -0.49 -6.45 5.28 -167.16 -0.88 -7.33 16 17 C 0.11 1.28 4.85 -83.77 -0.41 0.87 16 18 C -0.09 -0.95 9.97 -39.38 -0.39 -1.34 16 19 C -0.09 -0.80 9.78 -39.59 -0.39 -1.19 16 20 C -0.10 -0.97 6.22 -39.49 -0.25 -1.21 16 21 Br -0.06 -0.51 33.70 -68.01 -2.29 -2.80 16 22 C -0.08 -0.80 9.78 -39.59 -0.39 -1.18 16 23 C -0.15 -1.57 7.90 -39.38 -0.31 -1.88 16 24 C 0.03 0.49 6.02 -1.90 -0.01 0.48 16 25 H 0.27 7.22 8.29 -40.82 -0.34 6.88 16 26 H 0.38 7.06 8.52 -40.82 -0.35 6.71 16 27 H 0.07 1.20 8.05 -51.93 -0.42 0.78 16 28 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 29 H 0.05 0.58 6.68 -51.93 -0.35 0.23 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 33 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 34 H 0.13 1.37 7.05 -52.48 -0.37 1.00 16 35 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.05 0.70 6.54 -51.93 -0.34 0.36 16 LS Contribution 324.65 15.07 4.89 4.89 Total: -1.00 -32.36 324.65 -10.24 -42.60 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -4.30 Total: 7.06 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -3.08 Total: -2.62 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: -0.50 Total: -45.80 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: 0.08 Total: -18.15 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.82 kcal Atomic # 35 Polarization: -0.51 SS G_CDS: -2.29 Total: -2.80 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.36 -10.24 -42.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185119649.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.825 kcal (2) G-P(sol) polarization free energy of solvation -32.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds