Wall clock time and date at job start Tue Mar 31 2020 21:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30677 * 1 3 3 Si 1.86793 * 119.99911 * 2 1 4 4 H 1.48503 * 109.47030 * 270.00125 * 3 2 1 5 5 H 1.48498 * 109.47385 * 30.00113 * 3 2 1 6 6 H 1.48506 * 109.47170 * 150.00083 * 3 2 1 7 7 C 1.40044 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00161 * 179.97438 * 7 2 1 9 9 C 1.46378 * 120.00061 * 0.02562 * 7 2 1 10 10 O 1.21689 * 119.99864 * 359.97438 * 9 7 2 11 11 N 1.34775 * 119.99966 * 180.02562 * 9 7 2 12 12 C 1.46507 * 119.99996 * 179.97438 * 11 9 7 13 13 H 1.08997 * 110.64232 * 323.30142 * 12 11 9 14 14 C 1.54591 * 110.72503 * 86.44975 * 12 11 9 15 15 C 1.53990 * 105.14172 * 140.49268 * 14 12 11 16 16 N 1.47896 * 107.05655 * 1.23017 * 15 14 12 17 17 C 1.39723 * 110.99838 * 214.15524 * 16 15 14 18 18 C 1.38906 * 120.06465 * 239.59106 * 17 16 15 19 19 C 1.38100 * 119.93808 * 180.27377 * 18 17 16 20 20 C 1.38361 * 120.06200 * 0.02562 * 19 18 17 21 21 Br 1.89101 * 119.93463 * 179.97438 * 20 19 18 22 22 C 1.38356 * 120.13504 * 359.97438 * 20 19 18 23 23 C 1.38106 * 120.06127 * 0.02562 * 22 20 19 24 24 C 1.48534 * 105.82124 * 334.66509 * 16 15 14 25 25 H 0.96993 * 119.99690 * 359.97438 * 1 2 3 26 26 H 0.96997 * 120.00194 * 359.97438 * 11 9 7 27 27 H 1.09002 * 110.31183 * 21.57956 * 14 12 11 28 28 H 1.08999 * 110.39851 * 259.45661 * 14 12 11 29 29 H 1.08994 * 109.92037 * 241.87302 * 15 14 12 30 30 H 1.09004 * 109.91525 * 120.57981 * 15 14 12 31 31 H 1.07998 * 120.03031 * 0.30339 * 18 17 16 32 32 H 1.07996 * 119.97082 * 180.02562 * 19 18 17 33 33 H 1.07993 * 119.97441 * 179.97438 * 22 20 19 34 34 H 1.08005 * 120.03461 * 180.02562 * 23 22 20 35 35 H 1.08996 * 110.66764 * 157.64306 * 24 16 15 36 36 H 1.08997 * 110.66764 * 280.77871 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4382 2.6526 0.7000 6 1 3.5383 1.4401 0.7000 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9490 -3.6477 0.0016 12 6 1.2165 -4.9165 0.0022 13 1 0.3159 -4.8399 0.6113 14 6 0.8660 -5.3465 -1.4408 15 6 1.0775 -6.8715 -1.4687 16 7 1.4928 -7.2768 -0.1083 17 6 2.3971 -8.3408 -0.1570 18 6 2.0908 -9.5435 0.4669 19 6 2.9890 -10.5915 0.4220 20 6 4.1932 -10.4443 -0.2433 21 35 5.4208 -11.8815 -0.3020 22 6 4.5011 -9.2476 -0.8657 23 6 3.6068 -8.1960 -0.8240 24 6 2.1180 -6.0743 0.4994 25 1 -0.4849 0.8400 0.0004 26 1 2.9190 -3.6477 0.0020 27 1 1.5318 -4.8592 -2.1531 28 1 -0.1722 -5.1043 -1.6678 29 1 1.8578 -7.1251 -2.1861 30 1 0.1463 -7.3707 -1.7368 31 1 1.1510 -9.6590 0.9862 32 1 2.7513 -11.5270 0.9065 33 1 5.4420 -9.1353 -1.3838 34 1 3.8475 -7.2621 -1.3104 35 1 2.0972 -6.1380 1.5873 36 1 3.1392 -5.9483 0.1397 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185119649.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:06 Heat of formation + Delta-G solvation = -20.513422 kcal Electronic energy + Delta-G solvation = -20384.740408 eV Core-core repulsion = 17106.982295 eV Total energy + Delta-G solvation = -3277.758114 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.037 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.43338 -39.67335 -38.41507 -35.23664 -34.45505 -33.05590 -32.10610 -31.44572 -29.76682 -28.75990 -27.61904 -24.22204 -23.41202 -22.68380 -21.72009 -21.07344 -19.23239 -18.44591 -17.56753 -17.15143 -16.81362 -16.22024 -15.95969 -15.50814 -15.17522 -15.06115 -14.64299 -14.53793 -14.30800 -14.24779 -13.71956 -13.23783 -13.09822 -12.88220 -12.67164 -12.63524 -12.46381 -12.36791 -12.33740 -12.00663 -11.87801 -11.54245 -11.27189 -10.92938 -10.06222 -9.88930 -9.68063 -9.56975 -9.46491 -8.28713 -6.85180 -0.05408 0.28031 0.61552 1.40803 1.42017 1.57286 2.23773 2.46588 2.49525 2.62036 3.27284 3.51609 3.60307 3.78915 3.89017 3.95045 4.04090 4.20342 4.25236 4.35410 4.37197 4.51892 4.61530 4.79295 4.87698 4.93371 4.98716 5.09278 5.14558 5.17069 5.32618 5.39971 5.53726 5.62619 5.88516 6.23289 6.25584 6.31346 6.87582 7.55020 8.50412 8.68241 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.031602 B = 0.002112 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.818192 B =13252.772335 C =13836.924482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.028 3.972 3 Si 0.997 3.003 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.249 1.249 7 C -0.573 4.573 8 H 0.088 0.912 9 C 0.541 3.459 10 O -0.629 6.629 11 N -0.746 5.746 12 C 0.152 3.848 13 H 0.053 0.947 14 C -0.137 4.137 15 C 0.054 3.946 16 N -0.488 5.488 17 C 0.089 3.911 18 C -0.093 4.093 19 C -0.082 4.082 20 C -0.103 4.103 21 Br -0.048 7.048 22 C -0.082 4.082 23 C -0.148 4.148 24 C 0.051 3.949 25 H 0.274 0.726 26 H 0.395 0.605 27 H 0.067 0.933 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.147 0.853 32 H 0.154 0.846 33 H 0.146 0.854 34 H 0.135 0.865 35 H 0.090 0.910 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.842 -24.152 -1.558 27.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.187 4.187 3 Si 0.816 3.184 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.172 1.172 7 C -0.609 4.609 8 H 0.106 0.894 9 C 0.346 3.654 10 O -0.516 6.516 11 N -0.400 5.400 12 C 0.045 3.955 13 H 0.071 0.929 14 C -0.177 4.177 15 C -0.072 4.072 16 N -0.210 5.210 17 C -0.006 4.006 18 C -0.112 4.112 19 C -0.103 4.103 20 C -0.183 4.183 21 Br 0.037 6.963 22 C -0.103 4.103 23 C -0.169 4.169 24 C -0.075 4.075 25 H 0.084 0.916 26 H 0.229 0.771 27 H 0.086 0.914 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.108 0.892 31 H 0.164 0.836 32 H 0.171 0.829 33 H 0.164 0.836 34 H 0.153 0.847 35 H 0.108 0.892 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.798 -24.793 -1.270 27.486 hybrid contribution 0.661 1.476 -0.488 1.689 sum 12.459 -23.317 -1.758 26.495 Atomic orbital electron populations 1.70189 1.09510 1.28902 1.36544 1.26962 0.95506 1.04952 0.91263 0.85031 0.78792 0.75178 0.79369 1.18671 1.19949 1.17185 1.21428 0.94739 0.90062 1.54694 0.89408 1.18560 0.86820 0.84203 0.75860 1.90563 1.16215 1.87831 1.56993 1.45760 1.09040 1.04206 1.80965 1.21353 0.94964 0.83722 0.95453 0.92878 1.22763 1.01664 0.95416 0.97838 1.22906 1.01882 0.93865 0.88573 1.62407 1.35336 1.04644 1.18617 1.19313 0.91136 0.92929 0.97191 1.21193 1.00384 0.90976 0.98693 1.21275 0.91561 0.99957 0.97471 1.21963 0.96454 0.94427 1.05419 1.96725 1.58331 1.43133 1.98103 1.21143 1.00120 0.91039 0.97951 1.21790 0.94512 0.99868 1.00689 1.23387 0.96436 0.87169 1.00550 0.91617 0.77099 0.91437 0.92873 0.91599 0.89224 0.83571 0.82880 0.83649 0.84735 0.89194 0.91203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.17 11.83 21.83 0.26 -49.91 16 2 C 0.03 1.56 5.50 85.30 0.47 2.03 16 3 Si 1.00 40.50 29.56 68.60 2.03 42.53 16 4 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 5 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 6 H -0.25 -9.35 7.11 99.48 0.71 -8.64 16 7 C -0.57 -31.92 9.54 24.83 0.24 -31.68 16 8 H 0.09 4.36 7.85 -2.91 -0.02 4.33 16 9 C 0.54 30.82 7.74 86.36 0.67 31.49 16 10 O -0.63 -41.79 14.74 -4.31 -0.06 -41.85 16 11 N -0.75 -32.28 5.14 -441.11 -2.27 -34.55 16 12 C 0.15 5.72 3.34 46.19 0.15 5.88 16 13 H 0.05 2.40 7.69 -2.39 -0.02 2.39 16 14 C -0.14 -4.64 6.67 31.47 0.21 -4.43 16 15 C 0.05 1.38 6.51 86.45 0.56 1.94 16 16 N -0.49 -12.39 5.28 -682.78 -3.60 -15.99 16 17 C 0.09 1.91 4.85 38.20 0.19 2.10 16 18 C -0.09 -1.73 9.97 22.40 0.22 -1.51 16 19 C -0.08 -1.34 9.78 22.27 0.22 -1.12 16 20 C -0.10 -1.76 6.22 22.33 0.14 -1.62 16 21 Br -0.05 -0.74 33.70 -20.37 -0.69 -1.43 16 22 C -0.08 -1.41 9.78 22.27 0.22 -1.19 16 23 C -0.15 -2.85 7.90 22.40 0.18 -2.67 16 24 C 0.05 1.43 6.02 86.65 0.52 1.95 16 25 H 0.27 15.16 8.29 -92.71 -0.77 14.39 16 26 H 0.39 14.51 8.52 -92.71 -0.79 13.72 16 27 H 0.07 2.31 8.05 -2.39 -0.02 2.29 16 28 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.07 1.46 6.68 -2.39 -0.02 1.45 16 30 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 32 H 0.15 1.85 8.06 -2.91 -0.02 1.82 16 33 H 0.15 2.03 8.06 -2.91 -0.02 2.00 16 34 H 0.13 2.47 7.05 -2.91 -0.02 2.45 16 35 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.07 1.72 6.54 -2.39 -0.02 1.70 16 Total: -1.00 -72.63 324.65 -0.03 -72.66 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: 0.32 Total: 27.38 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: 3.98 Total: 1.16 kcal Atomic # 7 Polarization: -94.84 SS G_CDS: -5.61 Total: -100.45 kcal Atomic # 8 Polarization: -41.79 SS G_CDS: -0.06 Total: -41.85 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Atomic # 35 Polarization: -0.74 SS G_CDS: -0.69 Total: -1.43 kcal Total: -72.63 -0.03 -72.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185119649.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.149 kcal (2) G-P(sol) polarization free energy of solvation -72.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds