Wall clock time and date at job start Tue Mar 31 2020 20:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86803 * 119.99705 * 2 1 4 4 H 1.48505 * 109.47101 * 269.99447 * 3 2 1 5 5 H 1.48500 * 109.47337 * 29.99593 * 3 2 1 6 6 H 1.48505 * 109.47031 * 149.99942 * 3 2 1 7 7 C 1.40049 * 120.00355 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00162 * 180.02562 * 7 2 1 9 9 C 1.46374 * 119.99620 * 0.02562 * 7 2 1 10 10 O 1.21688 * 120.00093 * 359.97438 * 9 7 2 11 11 N 1.34777 * 119.99476 * 180.02562 * 9 7 2 12 12 N 1.40102 * 119.99576 * 180.02562 * 11 9 7 13 13 C 1.39674 * 119.99957 * 180.02562 * 12 11 9 14 14 C 1.38918 * 120.07522 * 179.97438 * 13 12 11 15 15 C 1.38102 * 119.92286 * 180.02562 * 14 13 12 16 16 C 1.38286 * 120.07519 * 0.02562 * 15 14 13 17 17 S 1.76204 * 119.92311 * 179.97438 * 16 15 14 18 18 O 1.42098 * 104.27743 * 333.92686 * 17 16 15 19 19 O 1.42093 * 104.27698 * 206.06603 * 17 16 15 20 20 C 1.81404 * 104.44896 * 89.99635 * 17 16 15 21 21 F 1.39905 * 109.47128 * 59.99903 * 20 17 16 22 22 F 1.39900 * 109.47153 * 300.00225 * 20 17 16 23 23 F 1.39897 * 109.47308 * 179.97438 * 20 17 16 24 24 C 1.38282 * 120.15092 * 0.26448 * 16 15 14 25 25 C 1.38106 * 120.07659 * 359.46184 * 24 16 15 26 26 H 0.96996 * 119.99849 * 0.02562 * 1 2 3 27 27 H 0.96995 * 120.00304 * 359.97438 * 11 9 7 28 28 H 0.97001 * 120.00552 * 359.97438 * 12 11 9 29 29 H 1.07999 * 120.03642 * 359.97438 * 14 13 12 30 30 H 1.07997 * 119.96004 * 179.97438 * 15 14 13 31 31 H 1.08001 * 119.96187 * 179.70557 * 24 16 15 32 32 H 1.07995 * 120.04122 * 180.27156 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4380 2.6528 0.6999 6 1 3.5382 1.4403 0.7001 7 6 2.0070 -1.2128 0.0005 8 1 3.0871 -1.2128 0.0010 9 6 1.2752 -2.4804 0.0005 10 8 0.0583 -2.4805 0.0005 11 7 1.9492 -3.6476 0.0016 12 7 1.2487 -4.8609 0.0010 13 6 1.9470 -6.0705 0.0027 14 6 1.2541 -7.2745 0.0027 15 6 1.9478 -8.4687 0.0048 16 6 3.3306 -8.4668 0.0075 17 16 4.2117 -9.9927 0.0109 18 8 3.3145 -10.9140 0.6154 19 8 5.4570 -9.6770 0.6180 20 6 4.4413 -10.3867 -1.7449 21 9 5.1706 -9.3639 -2.3609 22 9 3.1921 -10.5062 -2.3633 23 9 5.1389 -11.5934 -1.8647 24 6 4.0235 -7.2701 0.0135 25 6 3.3362 -6.0722 0.0057 26 1 -0.4850 0.8400 -0.0004 27 1 2.9191 -3.6476 0.0020 28 1 0.2787 -4.8610 0.0003 29 1 0.1741 -7.2766 0.0018 30 1 1.4096 -9.4050 0.0052 31 1 5.1035 -7.2722 0.0204 32 1 3.8779 -5.1380 0.0060 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185423689.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:04 Heat of formation + Delta-G solvation = -171.104044 kcal Electronic energy + Delta-G solvation = -26284.518532 eV Core-core repulsion = 21539.011876 eV Total energy + Delta-G solvation = -4745.506656 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.038 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.55764 -48.25218 -48.19229 -39.67526 -37.85814 -37.77734 -36.72425 -35.19256 -32.83076 -31.68402 -30.97202 -28.60804 -27.33053 -26.22948 -23.26068 -22.63176 -20.66963 -20.52604 -19.25040 -19.09927 -19.05634 -18.65683 -17.66321 -16.93075 -16.49814 -16.06357 -15.49716 -15.17814 -15.04936 -14.98797 -14.70300 -14.56888 -14.45207 -14.26989 -14.26694 -14.08152 -14.02620 -13.57828 -13.29086 -12.91514 -12.81995 -12.79156 -12.69655 -11.67666 -11.57038 -11.44840 -11.26827 -11.13969 -11.10106 -10.86752 -10.50446 -9.25911 -9.18449 -8.97427 -8.21340 -7.00109 -6.56924 -5.03921 -1.20483 0.91581 1.32943 2.00742 2.55821 2.57571 2.90935 2.92246 2.96274 3.05051 3.08464 3.38892 3.57493 3.82762 3.89894 4.20898 4.61202 4.70277 4.94441 5.17826 5.36199 5.37698 5.57620 5.81190 6.01131 6.07139 6.21805 6.64530 6.95096 7.10054 7.60540 7.87648 8.17966 8.63839 8.89260 10.11947 10.34571 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.026848 B = 0.002397 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.644407 B =11678.690988 C =11990.319176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.760 5.760 2 C 0.086 3.914 3 Si 0.920 3.080 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.530 4.530 8 H 0.077 0.923 9 C 0.551 3.449 10 O -0.575 6.575 11 N -0.565 5.565 12 N -0.497 5.497 13 C 0.290 3.710 14 C -0.222 4.222 15 C 0.043 3.957 16 C -0.734 4.734 17 S 2.491 3.509 18 O -0.873 6.873 19 O -0.872 6.872 20 C -0.027 4.027 21 F -0.158 7.158 22 F -0.159 7.159 23 F -0.168 7.168 24 C 0.045 3.955 25 C -0.226 4.226 26 H 0.275 0.725 27 H 0.407 0.593 28 H 0.434 0.566 29 H 0.136 0.864 30 H 0.142 0.858 31 H 0.142 0.858 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.055 -16.663 -1.508 18.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.135 4.135 3 Si 0.744 3.256 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.568 4.568 8 H 0.095 0.905 9 C 0.357 3.643 10 O -0.456 6.456 11 N -0.318 5.318 12 N -0.207 5.207 13 C 0.170 3.830 14 C -0.247 4.247 15 C 0.022 3.978 16 C -0.833 4.833 17 S 2.657 3.343 18 O -0.870 6.870 19 O -0.869 6.869 20 C -0.150 4.150 21 F -0.140 7.140 22 F -0.140 7.140 23 F -0.150 7.150 24 C 0.023 3.977 25 C -0.251 4.251 26 H 0.086 0.914 27 H 0.247 0.753 28 H 0.277 0.723 29 H 0.153 0.847 30 H 0.160 0.840 31 H 0.160 0.840 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.320 -16.797 -1.024 18.351 hybrid contribution 0.260 1.136 -1.195 1.669 sum 7.580 -15.661 -2.219 17.540 Atomic orbital electron populations 1.69987 1.07233 1.28210 1.33274 1.25743 0.94819 1.00625 0.92352 0.86157 0.80045 0.80279 0.79149 1.19421 1.20165 1.18563 1.20669 0.93934 0.87678 1.54534 0.90498 1.18727 0.87748 0.80609 0.77213 1.90644 1.13743 1.85519 1.55654 1.46231 1.07309 0.94704 1.83537 1.44023 1.07992 0.96329 1.72307 1.18270 0.92105 0.84862 0.87750 1.20483 1.00236 0.90134 1.13895 1.20474 0.91070 0.98487 0.87791 1.28856 1.05415 1.15029 1.33981 1.06883 0.76440 0.77011 0.73955 1.93638 1.63994 1.63841 1.65523 1.93640 1.44013 1.83875 1.65383 1.35546 0.78521 0.79592 1.21363 1.93264 1.77151 1.57334 1.86239 1.93258 1.39023 1.95600 1.86163 1.93236 1.79059 1.45215 1.97458 1.20522 0.99674 0.90073 0.87383 1.20529 0.92034 0.98811 1.13688 0.91448 0.75265 0.72252 0.84654 0.84011 0.84041 0.84935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -20.80 11.83 55.55 0.66 -20.14 16 2 C 0.09 2.18 5.50 -17.37 -0.10 2.08 16 3 Si 0.92 18.22 29.56 -169.99 -5.02 13.20 16 4 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 5 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 6 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 7 C -0.53 -13.31 9.54 -35.63 -0.34 -13.65 16 8 H 0.08 1.72 7.85 -52.49 -0.41 1.31 16 9 C 0.55 13.92 7.86 -12.99 -0.10 13.81 16 10 O -0.57 -16.67 14.86 5.20 0.08 -16.59 16 11 N -0.57 -11.09 6.21 30.19 0.19 -10.90 16 12 N -0.50 -8.44 6.45 32.41 0.21 -8.23 16 13 C 0.29 4.07 6.72 -83.78 -0.56 3.50 16 14 C -0.22 -2.65 9.90 -39.38 -0.39 -3.04 16 15 C 0.04 0.47 9.46 -39.61 -0.37 0.10 16 16 C -0.73 -8.13 5.65 -39.55 -0.22 -8.35 16 17 S 2.49 25.58 5.19 -107.50 -0.56 25.03 16 18 O -0.87 -10.09 17.12 -57.54 -0.98 -11.08 16 19 O -0.87 -10.21 17.11 -57.54 -0.98 -11.20 16 20 C -0.03 -0.28 3.55 101.05 0.36 0.08 16 21 F -0.16 -1.73 17.35 2.25 0.04 -1.69 16 22 F -0.16 -1.71 17.35 2.25 0.04 -1.67 16 23 F -0.17 -1.80 17.36 2.25 0.04 -1.76 16 24 C 0.04 0.51 9.46 -39.61 -0.37 0.13 16 25 C -0.23 -2.89 9.48 -39.38 -0.37 -3.27 16 26 H 0.27 6.80 8.29 -40.82 -0.34 6.46 16 27 H 0.41 6.81 6.58 -182.60 -1.20 5.60 16 28 H 0.43 7.51 8.01 -182.60 -1.46 6.05 16 29 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.14 1.20 7.56 -52.49 -0.40 0.80 16 31 H 0.14 1.28 7.56 -52.49 -0.40 0.89 16 32 H 0.13 1.56 6.20 -52.49 -0.33 1.24 16 LS Contribution 318.95 15.07 4.81 4.81 Total: -1.00 -32.25 318.95 -7.73 -39.98 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -3.75 Total: 8.84 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -2.48 Total: -8.60 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 1.05 Total: -39.27 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: -1.89 Total: -38.87 kcal Atomic # 9 Polarization: -5.23 SS G_CDS: 0.12 Total: -5.12 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.02 Total: 13.20 kcal Atomic # 16 Polarization: 25.58 SS G_CDS: -0.56 Total: 25.03 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.25 -7.73 -39.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185423689.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.125 kcal (2) G-P(sol) polarization free energy of solvation -32.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds