Wall clock time and date at job start Tue Mar 31 2020 20:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86803 * 119.99705 * 2 1 4 4 H 1.48505 * 109.47101 * 269.99447 * 3 2 1 5 5 H 1.48500 * 109.47337 * 29.99593 * 3 2 1 6 6 H 1.48505 * 109.47031 * 149.99942 * 3 2 1 7 7 C 1.40049 * 120.00355 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00162 * 180.02562 * 7 2 1 9 9 C 1.46374 * 119.99620 * 0.02562 * 7 2 1 10 10 O 1.21688 * 120.00093 * 359.97438 * 9 7 2 11 11 N 1.34777 * 119.99476 * 180.02562 * 9 7 2 12 12 N 1.40102 * 119.99576 * 180.02562 * 11 9 7 13 13 C 1.39674 * 119.99957 * 180.02562 * 12 11 9 14 14 C 1.38918 * 120.07522 * 179.97438 * 13 12 11 15 15 C 1.38102 * 119.92286 * 180.02562 * 14 13 12 16 16 C 1.38286 * 120.07519 * 0.02562 * 15 14 13 17 17 S 1.76204 * 119.92311 * 179.97438 * 16 15 14 18 18 O 1.42098 * 104.27743 * 333.92686 * 17 16 15 19 19 O 1.42093 * 104.27698 * 206.06603 * 17 16 15 20 20 C 1.81404 * 104.44896 * 89.99635 * 17 16 15 21 21 F 1.39905 * 109.47128 * 59.99903 * 20 17 16 22 22 F 1.39900 * 109.47153 * 300.00225 * 20 17 16 23 23 F 1.39897 * 109.47308 * 179.97438 * 20 17 16 24 24 C 1.38282 * 120.15092 * 0.26448 * 16 15 14 25 25 C 1.38106 * 120.07659 * 359.46184 * 24 16 15 26 26 H 0.96996 * 119.99849 * 0.02562 * 1 2 3 27 27 H 0.96995 * 120.00304 * 359.97438 * 11 9 7 28 28 H 0.97001 * 120.00552 * 359.97438 * 12 11 9 29 29 H 1.07999 * 120.03642 * 359.97438 * 14 13 12 30 30 H 1.07997 * 119.96004 * 179.97438 * 15 14 13 31 31 H 1.08001 * 119.96187 * 179.70557 * 24 16 15 32 32 H 1.07995 * 120.04122 * 180.27156 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4380 2.6528 0.6999 6 1 3.5382 1.4403 0.7001 7 6 2.0070 -1.2128 0.0005 8 1 3.0871 -1.2128 0.0010 9 6 1.2752 -2.4804 0.0005 10 8 0.0583 -2.4805 0.0005 11 7 1.9492 -3.6476 0.0016 12 7 1.2487 -4.8609 0.0010 13 6 1.9470 -6.0705 0.0027 14 6 1.2541 -7.2745 0.0027 15 6 1.9478 -8.4687 0.0048 16 6 3.3306 -8.4668 0.0075 17 16 4.2117 -9.9927 0.0109 18 8 3.3145 -10.9140 0.6154 19 8 5.4570 -9.6770 0.6180 20 6 4.4413 -10.3867 -1.7449 21 9 5.1706 -9.3639 -2.3609 22 9 3.1921 -10.5062 -2.3633 23 9 5.1389 -11.5934 -1.8647 24 6 4.0235 -7.2701 0.0135 25 6 3.3362 -6.0722 0.0057 26 1 -0.4850 0.8400 -0.0004 27 1 2.9191 -3.6476 0.0020 28 1 0.2787 -4.8610 0.0003 29 1 0.1741 -7.2766 0.0018 30 1 1.4096 -9.4050 0.0052 31 1 5.1035 -7.2722 0.0204 32 1 3.8779 -5.1380 0.0060 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185423689.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:03 Heat of formation + Delta-G solvation = -195.314844 kcal Electronic energy + Delta-G solvation = -26285.568391 eV Core-core repulsion = 21539.011876 eV Total energy + Delta-G solvation = -4746.556515 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.038 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.43066 -49.12335 -49.06846 -40.80117 -39.38959 -38.79310 -37.66634 -36.65192 -34.71326 -33.04188 -31.99841 -29.94132 -28.25350 -27.92089 -24.31144 -23.75093 -22.16598 -21.52023 -20.14661 -20.06663 -19.96607 -19.94856 -18.76758 -18.29145 -18.00427 -17.18954 -16.95871 -16.07349 -15.97030 -15.90298 -15.86550 -15.58753 -15.44267 -15.43566 -15.35786 -15.13779 -15.13665 -14.65600 -14.43553 -14.34479 -14.30008 -13.72928 -13.64361 -13.27932 -12.93177 -12.76335 -12.65043 -12.46590 -12.21727 -12.09273 -12.02822 -11.00755 -10.42158 -10.17820 -10.12260 -8.42607 -8.39226 -6.96861 -2.10827 -0.07749 0.36619 1.09369 1.22675 1.41925 1.45817 1.60249 1.69385 2.02623 2.04806 2.25418 2.33598 2.50737 2.62383 2.94191 3.48361 3.50911 3.74229 3.92773 4.25823 4.39716 4.56361 4.88496 5.01897 5.06749 5.21985 5.24982 5.38960 5.70758 5.94828 6.29966 6.68683 6.76742 7.22710 8.28674 8.52515 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.026848 B = 0.002397 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.644407 B =11678.690988 C =11990.319176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.032 3.968 3 Si 1.003 2.997 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.245 1.245 7 C -0.557 4.557 8 H 0.099 0.901 9 C 0.540 3.460 10 O -0.624 6.624 11 N -0.556 5.556 12 N -0.518 5.518 13 C 0.272 3.728 14 C -0.222 4.222 15 C 0.042 3.958 16 C -0.731 4.731 17 S 2.523 3.477 18 O -0.880 6.880 19 O -0.881 6.881 20 C -0.022 4.022 21 F -0.159 7.159 22 F -0.159 7.159 23 F -0.167 7.167 24 C 0.043 3.957 25 C -0.235 4.235 26 H 0.279 0.721 27 H 0.420 0.580 28 H 0.428 0.572 29 H 0.152 0.848 30 H 0.170 0.830 31 H 0.166 0.834 32 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.080 -17.822 -1.581 20.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.185 4.185 3 Si 0.822 3.178 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.169 1.169 7 C -0.594 4.594 8 H 0.118 0.882 9 C 0.345 3.655 10 O -0.509 6.509 11 N -0.307 5.307 12 N -0.232 5.232 13 C 0.158 3.842 14 C -0.247 4.247 15 C 0.021 3.979 16 C -0.829 4.829 17 S 2.689 3.311 18 O -0.877 6.877 19 O -0.878 6.878 20 C -0.146 4.146 21 F -0.141 7.141 22 F -0.140 7.140 23 F -0.149 7.149 24 C 0.022 3.978 25 C -0.260 4.260 26 H 0.089 0.911 27 H 0.263 0.737 28 H 0.270 0.730 29 H 0.170 0.830 30 H 0.187 0.813 31 H 0.184 0.816 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 9.427 -18.048 -1.092 20.391 hybrid contribution -0.256 1.138 -1.186 1.664 sum 9.171 -16.910 -2.279 19.372 Atomic orbital electron populations 1.70146 1.09554 1.29531 1.35166 1.26974 0.95573 1.04908 0.91026 0.84920 0.78805 0.74576 0.79485 1.18626 1.19996 1.16851 1.21253 0.95231 0.88352 1.54601 0.88249 1.18922 0.87289 0.82370 0.76871 1.90593 1.15740 1.86821 1.57757 1.45466 1.07652 0.95246 1.82365 1.43918 1.07531 0.95741 1.75994 1.18575 0.92725 0.84361 0.88524 1.20765 1.01344 0.89671 1.12896 1.20862 0.91194 0.99191 0.86678 1.29159 1.05845 1.15572 1.32292 1.06033 0.75682 0.76132 0.73301 1.93629 1.64295 1.63934 1.65838 1.93630 1.44493 1.83926 1.65769 1.35396 0.78536 0.79605 1.21052 1.93271 1.77186 1.57375 1.86260 1.93267 1.38996 1.95594 1.86166 1.93247 1.79040 1.45164 1.97430 1.20844 1.00995 0.89521 0.86433 1.20742 0.91776 0.99837 1.13642 0.91139 0.73736 0.72987 0.83044 0.81266 0.81646 0.84391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.24 11.83 21.84 0.26 -45.98 16 2 C 0.03 1.62 5.50 85.30 0.47 2.09 16 3 Si 1.00 37.24 29.56 68.60 2.03 39.27 16 4 H -0.26 -9.31 7.11 99.48 0.71 -8.61 16 5 H -0.28 -10.01 7.11 99.48 0.71 -9.30 16 6 H -0.25 -8.36 7.11 99.48 0.71 -7.66 16 7 C -0.56 -28.37 9.54 24.83 0.24 -28.13 16 8 H 0.10 4.40 7.85 -2.91 -0.02 4.37 16 9 C 0.54 28.23 7.86 86.36 0.68 28.91 16 10 O -0.62 -37.99 14.86 -4.31 -0.06 -38.05 16 11 N -0.56 -22.34 6.21 -176.63 -1.10 -23.44 16 12 N -0.52 -18.05 6.45 -51.36 -0.33 -18.38 16 13 C 0.27 7.50 6.72 38.22 0.26 7.76 16 14 C -0.22 -4.99 9.90 22.40 0.22 -4.77 16 15 C 0.04 0.80 9.46 22.25 0.21 1.01 16 16 C -0.73 -14.27 5.65 22.29 0.13 -14.15 16 17 S 2.52 44.76 5.19 -56.49 -0.29 44.46 16 18 O -0.88 -17.77 17.12 -127.65 -2.19 -19.96 16 19 O -0.88 -18.16 17.11 -127.65 -2.18 -20.34 16 20 C -0.02 -0.40 3.55 113.37 0.40 0.01 16 21 F -0.16 -3.07 17.35 44.97 0.78 -2.29 16 22 F -0.16 -3.00 17.35 44.97 0.78 -2.22 16 23 F -0.17 -3.16 17.36 44.97 0.78 -2.38 16 24 C 0.04 0.87 9.46 22.25 0.21 1.08 16 25 C -0.24 -5.75 9.48 22.40 0.21 -5.54 16 26 H 0.28 14.31 8.29 -92.71 -0.77 13.54 16 27 H 0.42 14.15 6.58 -213.32 -1.40 12.74 16 28 H 0.43 15.59 8.01 -213.32 -1.71 13.89 16 29 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 30 H 0.17 2.30 7.56 -2.91 -0.02 2.28 16 31 H 0.17 2.52 7.56 -2.91 -0.02 2.50 16 32 H 0.14 3.13 6.20 -2.91 -0.02 3.11 16 Total: -1.00 -70.97 318.95 -0.37 -71.34 By element: Atomic # 1 Polarization: 31.56 SS G_CDS: -1.87 Total: 29.69 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: 3.03 Total: -11.72 kcal Atomic # 7 Polarization: -86.63 SS G_CDS: -1.17 Total: -87.80 kcal Atomic # 8 Polarization: -73.92 SS G_CDS: -4.43 Total: -78.35 kcal Atomic # 9 Polarization: -9.23 SS G_CDS: 2.34 Total: -6.89 kcal Atomic # 14 Polarization: 37.24 SS G_CDS: 2.03 Total: 39.27 kcal Atomic # 16 Polarization: 44.76 SS G_CDS: -0.29 Total: 44.46 kcal Total: -70.97 -0.37 -71.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185423689.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.973 kcal (2) G-P(sol) polarization free energy of solvation -70.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds