Wall clock time and date at job start Tue Mar 31 2020 20:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86808 * 119.99507 * 2 1 4 4 H 1.48497 * 109.46732 * 270.00108 * 3 2 1 5 5 H 1.48493 * 109.47029 * 30.00196 * 3 2 1 6 6 H 1.48499 * 109.46888 * 150.00171 * 3 2 1 7 7 C 1.40041 * 120.00369 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00340 * 179.97438 * 7 2 1 9 9 C 1.46375 * 119.99970 * 359.97438 * 7 2 1 10 10 O 1.21688 * 119.99938 * 0.02562 * 9 7 2 11 11 N 1.34780 * 120.00155 * 180.02562 * 9 7 2 12 12 C 1.46496 * 120.00168 * 179.97438 * 11 9 7 13 13 C 1.53003 * 109.47225 * 179.97438 * 12 11 9 14 14 N 1.46496 * 109.47225 * 179.97438 * 13 12 11 15 15 S 1.65603 * 120.00252 * 165.00477 * 14 13 12 16 16 O 1.42102 * 106.39816 * 311.46063 * 15 14 13 17 17 O 1.42091 * 106.40305 * 178.54019 * 15 14 13 18 18 C 1.76201 * 107.21735 * 64.99748 * 15 14 13 19 19 C 1.33347 * 125.18395 * 90.00120 * 18 15 14 20 20 C 1.38475 * 114.92849 * 180.02562 * 19 18 15 21 21 C 1.33503 * 114.88382 * 0.02562 * 20 19 18 22 22 Cl 1.73595 * 125.20870 * 179.97438 * 21 20 19 23 23 S 1.75877 * 125.19221 * 270.00345 * 18 15 14 24 24 H 0.96996 * 120.00192 * 359.97438 * 1 2 3 25 25 H 0.97001 * 119.99549 * 359.97438 * 11 9 7 26 26 H 1.09007 * 109.46694 * 59.99751 * 12 11 9 27 27 H 1.08992 * 109.47218 * 300.00027 * 12 11 9 28 28 H 1.09004 * 109.46747 * 60.00149 * 13 12 11 29 29 H 1.09001 * 109.47284 * 300.00328 * 13 12 11 30 30 H 0.97003 * 120.00280 * 345.00473 * 14 13 12 31 31 H 1.07996 * 122.54060 * 0.02562 * 19 18 15 32 32 H 1.08005 * 122.55896 * 179.73668 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6179 0.0000 4 1 2.4881 2.0465 -1.4001 5 1 1.4381 2.6527 0.7000 6 1 3.5382 1.4404 0.7000 7 6 2.0071 -1.2127 -0.0005 8 1 3.0870 -1.2127 -0.0010 9 6 1.2753 -2.4804 -0.0005 10 8 0.0584 -2.4805 -0.0005 11 7 1.9492 -3.6476 -0.0005 12 6 1.2168 -4.9164 0.0000 13 6 2.2111 -6.0793 -0.0007 14 7 1.4787 -7.3480 0.0004 15 16 2.2640 -8.7578 -0.3711 16 8 2.9925 -8.5086 -1.5655 17 8 1.3024 -9.7968 -0.2498 18 6 3.4603 -9.0370 0.8922 19 6 3.2450 -9.7205 2.0167 20 6 4.3366 -9.8088 2.8641 21 6 5.4387 -9.1956 2.4263 22 17 6.9542 -9.1373 3.2709 23 16 5.1203 -8.4568 0.8623 24 1 -0.4850 0.8400 0.0004 25 1 2.9192 -3.6475 -0.0009 26 1 0.5898 -4.9743 -0.8898 27 1 0.5905 -4.9740 0.8902 28 1 2.8384 -6.0215 0.8888 29 1 2.8371 -6.0215 -0.8912 30 1 0.5337 -7.3624 0.2189 31 1 2.2914 -10.1711 2.2491 32 1 4.2980 -10.3299 3.8094 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185491063.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:57 Heat of formation + Delta-G solvation = -83.835114 kcal Electronic energy + Delta-G solvation = -21432.356013 eV Core-core repulsion = 17672.810384 eV Total energy + Delta-G solvation = -3759.545629 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 337.999 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.57331 -37.66367 -37.41164 -37.13639 -36.12375 -35.75905 -32.96995 -32.19726 -30.17311 -28.21535 -25.89423 -24.93089 -22.51147 -21.03542 -19.97389 -19.63415 -18.92597 -17.76591 -17.30959 -16.70689 -16.13818 -15.73843 -15.31576 -15.02037 -14.68082 -14.46424 -14.29933 -13.98415 -13.83616 -13.37747 -12.81232 -12.62267 -12.38525 -12.34371 -12.28491 -12.22213 -12.19428 -11.51751 -11.43111 -11.31064 -11.27329 -11.10807 -10.91812 -10.50111 -10.25659 -9.74561 -9.58743 -9.10589 -8.88876 -7.69603 -7.62456 -6.23127 -4.68816 -0.23569 0.11298 0.49744 1.09607 1.57673 1.83183 2.74456 3.12360 3.19334 3.22456 3.42761 4.07224 4.21161 4.54364 4.56369 4.74650 4.83272 4.87707 5.16061 5.19513 5.20666 5.48509 5.59897 5.66210 5.74882 6.34951 6.40844 6.74781 7.39710 7.84402 7.98620 8.26574 8.98327 9.44429 10.54598 10.72525 Molecular weight = 338.00amu Principal moments of inertia in cm(-1) A = 0.013508 B = 0.002754 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.322810 B =10166.160737 C =11675.317423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.909 3.091 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.069 0.931 9 C 0.555 3.445 10 O -0.579 6.579 11 N -0.767 5.767 12 C 0.129 3.871 13 C 0.103 3.897 14 N -1.106 6.106 15 S 2.724 3.276 16 O -0.946 6.946 17 O -0.950 6.950 18 C -0.792 4.792 19 C 0.016 3.984 20 C -0.150 4.150 21 C -0.117 4.117 22 Cl 0.001 6.999 23 S 0.277 5.723 24 H 0.269 0.731 25 H 0.382 0.618 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.424 0.576 31 H 0.165 0.835 32 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.554 -20.104 5.859 23.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.133 4.133 3 Si 0.734 3.266 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.087 0.913 9 C 0.359 3.641 10 O -0.462 6.462 11 N -0.424 5.424 12 C 0.002 3.998 13 C -0.024 4.024 14 N -0.869 5.869 15 S 2.807 3.193 16 O -0.936 6.936 17 O -0.940 6.940 18 C -0.993 4.993 19 C -0.019 4.019 20 C -0.182 4.182 21 C -0.264 4.264 22 Cl 0.029 6.971 23 S 0.543 5.457 24 H 0.080 0.920 25 H 0.213 0.787 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.103 0.897 30 H 0.260 0.740 31 H 0.182 0.818 32 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 11.567 -19.652 4.159 23.179 hybrid contribution 0.285 0.053 2.013 2.034 sum 11.851 -19.599 6.172 23.720 Atomic orbital electron populations 1.70017 1.07081 1.27365 1.35154 1.25717 0.94636 1.00355 0.92593 0.86352 0.80106 0.81299 0.78866 1.19709 1.20477 1.18899 1.20869 0.93638 0.89248 1.54395 0.91293 1.18234 0.87215 0.82278 0.76368 1.90608 1.14080 1.86686 1.54833 1.46070 1.08667 1.04473 1.83206 1.20935 0.93753 0.83317 1.01808 1.21602 0.95392 0.82929 1.02442 1.55317 1.21885 1.21404 1.88272 1.01245 0.72772 0.72329 0.72956 1.93628 1.73648 1.84952 1.41335 1.93607 1.59230 1.54549 1.86603 1.36194 1.17873 1.21488 1.23710 1.19848 1.00067 0.92417 0.89577 1.20439 0.91155 1.03567 1.03063 1.26060 0.93270 1.06708 1.00354 1.98410 1.26315 1.97021 1.75325 1.84536 1.00855 1.49193 1.11160 0.92045 0.78651 0.92301 0.92526 0.91333 0.89663 0.74044 0.81803 0.82336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.64 11.83 55.55 0.66 -21.98 16 2 C 0.09 2.38 5.50 -17.37 -0.10 2.28 16 3 Si 0.91 19.70 29.56 -169.99 -5.02 14.67 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 6 H -0.26 -5.53 7.11 56.52 0.40 -5.12 16 7 C -0.54 -14.94 9.54 -35.63 -0.34 -15.28 16 8 H 0.07 1.72 7.85 -52.49 -0.41 1.30 16 9 C 0.55 15.27 7.75 -12.99 -0.10 15.16 16 10 O -0.58 -18.30 15.02 5.20 0.08 -18.23 16 11 N -0.77 -15.98 5.55 -61.72 -0.34 -16.33 16 12 C 0.13 2.21 5.82 -4.04 -0.02 2.19 16 13 C 0.10 1.26 6.34 -4.04 -0.03 1.24 16 14 N -1.11 -11.70 6.00 -10.61 -0.06 -11.77 16 15 S 2.72 30.32 5.88 -107.50 -0.63 29.68 16 16 O -0.95 -13.15 17.38 -57.17 -0.99 -14.14 16 17 O -0.95 -12.22 17.80 -57.17 -1.02 -13.24 16 18 C -0.79 -7.64 6.54 29.02 0.19 -7.45 16 19 C 0.02 0.13 9.84 -41.20 -0.41 -0.28 16 20 C -0.15 -1.13 10.13 -41.15 -0.42 -1.54 16 21 C -0.12 -1.00 7.10 29.08 0.21 -0.79 16 22 Cl 0.00 0.00 29.29 -51.86 -1.52 -1.51 16 23 S 0.28 2.59 23.22 -107.50 -2.50 0.10 16 24 H 0.27 7.19 8.29 -40.82 -0.34 6.85 16 25 H 0.38 6.77 8.45 -40.82 -0.35 6.42 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.09 1.02 7.75 -51.93 -0.40 0.62 16 30 H 0.42 3.87 8.65 -34.47 -0.30 3.58 16 31 H 0.16 1.00 8.05 -52.49 -0.42 0.57 16 32 H 0.16 0.83 8.06 -52.48 -0.42 0.40 16 LS Contribution 332.92 15.07 5.02 5.02 Total: -1.00 -36.91 332.92 -10.05 -46.97 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -2.71 Total: 5.25 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -1.01 Total: -4.48 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: 0.25 Total: -50.08 kcal Atomic # 8 Polarization: -43.68 SS G_CDS: -1.93 Total: -45.61 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.67 kcal Atomic # 16 Polarization: 32.91 SS G_CDS: -3.13 Total: 29.78 kcal Atomic # 17 Polarization: 0.00 SS G_CDS: -1.52 Total: -1.51 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -36.91 -10.05 -46.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185491063.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.869 kcal (2) G-P(sol) polarization free energy of solvation -36.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds