Wall clock time and date at job start Tue Mar 31 2020 20:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86808 * 119.99507 * 2 1 4 4 H 1.48497 * 109.46732 * 270.00108 * 3 2 1 5 5 H 1.48493 * 109.47029 * 30.00196 * 3 2 1 6 6 H 1.48499 * 109.46888 * 150.00171 * 3 2 1 7 7 C 1.40041 * 120.00369 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00340 * 179.97438 * 7 2 1 9 9 C 1.46375 * 119.99970 * 359.97438 * 7 2 1 10 10 O 1.21688 * 119.99938 * 0.02562 * 9 7 2 11 11 N 1.34780 * 120.00155 * 180.02562 * 9 7 2 12 12 C 1.46496 * 120.00168 * 179.97438 * 11 9 7 13 13 C 1.53003 * 109.47225 * 179.97438 * 12 11 9 14 14 N 1.46496 * 109.47225 * 179.97438 * 13 12 11 15 15 S 1.65603 * 120.00252 * 165.00477 * 14 13 12 16 16 O 1.42102 * 106.39816 * 311.46063 * 15 14 13 17 17 O 1.42091 * 106.40305 * 178.54019 * 15 14 13 18 18 C 1.76201 * 107.21735 * 64.99748 * 15 14 13 19 19 C 1.33347 * 125.18395 * 90.00120 * 18 15 14 20 20 C 1.38475 * 114.92849 * 180.02562 * 19 18 15 21 21 C 1.33503 * 114.88382 * 0.02562 * 20 19 18 22 22 Cl 1.73595 * 125.20870 * 179.97438 * 21 20 19 23 23 S 1.75877 * 125.19221 * 270.00345 * 18 15 14 24 24 H 0.96996 * 120.00192 * 359.97438 * 1 2 3 25 25 H 0.97001 * 119.99549 * 359.97438 * 11 9 7 26 26 H 1.09007 * 109.46694 * 59.99751 * 12 11 9 27 27 H 1.08992 * 109.47218 * 300.00027 * 12 11 9 28 28 H 1.09004 * 109.46747 * 60.00149 * 13 12 11 29 29 H 1.09001 * 109.47284 * 300.00328 * 13 12 11 30 30 H 0.97003 * 120.00280 * 345.00473 * 14 13 12 31 31 H 1.07996 * 122.54060 * 0.02562 * 19 18 15 32 32 H 1.08005 * 122.55896 * 179.73668 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6179 0.0000 4 1 2.4881 2.0465 -1.4001 5 1 1.4381 2.6527 0.7000 6 1 3.5382 1.4404 0.7000 7 6 2.0071 -1.2127 -0.0005 8 1 3.0870 -1.2127 -0.0010 9 6 1.2753 -2.4804 -0.0005 10 8 0.0584 -2.4805 -0.0005 11 7 1.9492 -3.6476 -0.0005 12 6 1.2168 -4.9164 0.0000 13 6 2.2111 -6.0793 -0.0007 14 7 1.4787 -7.3480 0.0004 15 16 2.2640 -8.7578 -0.3711 16 8 2.9925 -8.5086 -1.5655 17 8 1.3024 -9.7968 -0.2498 18 6 3.4603 -9.0370 0.8922 19 6 3.2450 -9.7205 2.0167 20 6 4.3366 -9.8088 2.8641 21 6 5.4387 -9.1956 2.4263 22 17 6.9542 -9.1373 3.2709 23 16 5.1203 -8.4568 0.8623 24 1 -0.4850 0.8400 0.0004 25 1 2.9192 -3.6475 -0.0009 26 1 0.5898 -4.9743 -0.8898 27 1 0.5905 -4.9740 0.8902 28 1 2.8384 -6.0215 0.8888 29 1 2.8371 -6.0215 -0.8912 30 1 0.5337 -7.3624 0.2189 31 1 2.2914 -10.1711 2.2491 32 1 4.2980 -10.3299 3.8094 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185491063.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:56 Heat of formation + Delta-G solvation = -114.325940 kcal Electronic energy + Delta-G solvation = -21433.678194 eV Core-core repulsion = 17672.810384 eV Total energy + Delta-G solvation = -3760.867811 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 337.999 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.48435 -39.22251 -38.42328 -37.78541 -37.12574 -37.07246 -34.79444 -34.13108 -30.84680 -29.81484 -27.72725 -25.59966 -23.84331 -21.94808 -21.61564 -20.44505 -19.82122 -19.34541 -18.54586 -17.62105 -17.37267 -17.02795 -16.48469 -16.24673 -16.05502 -15.90314 -15.42449 -15.02756 -14.64317 -14.46476 -14.35379 -13.99571 -13.48976 -13.38139 -13.30123 -13.11519 -13.04611 -12.98716 -12.92484 -12.68433 -12.61581 -12.46334 -12.21891 -11.98913 -11.91033 -10.91284 -10.67749 -10.26618 -9.87588 -9.78676 -9.49190 -8.27469 -6.83110 -0.97315 -0.71227 -0.18573 0.42026 0.93331 1.20678 1.43570 1.44545 1.59839 1.85011 2.27756 2.49403 2.55505 3.15497 3.39546 3.64233 3.71415 3.96908 4.12481 4.18019 4.40522 4.52589 4.53926 4.63262 4.95673 5.02008 5.04092 5.35230 5.88568 5.91318 6.23516 6.27888 6.89515 7.55853 8.50625 8.69087 Molecular weight = 338.00amu Principal moments of inertia in cm(-1) A = 0.013508 B = 0.002754 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.322810 B =10166.160737 C =11675.317423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.028 3.972 3 Si 0.998 3.002 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.247 1.247 7 C -0.572 4.572 8 H 0.091 0.909 9 C 0.538 3.462 10 O -0.632 6.632 11 N -0.754 5.754 12 C 0.128 3.872 13 C 0.115 3.885 14 N -1.103 6.103 15 S 2.745 3.255 16 O -0.976 6.976 17 O -0.967 6.967 18 C -0.805 4.805 19 C 0.025 3.975 20 C -0.146 4.146 21 C -0.119 4.119 22 Cl 0.007 6.993 23 S 0.255 5.745 24 H 0.274 0.726 25 H 0.399 0.601 26 H 0.041 0.959 27 H 0.050 0.950 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.430 0.570 31 H 0.186 0.814 32 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.492 -20.407 7.016 25.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.187 4.187 3 Si 0.817 3.183 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.170 1.170 7 C -0.608 4.608 8 H 0.109 0.891 9 C 0.342 3.658 10 O -0.519 6.519 11 N -0.410 5.410 12 C 0.002 3.998 13 C -0.011 4.011 14 N -0.866 5.866 15 S 2.832 3.168 16 O -0.966 6.966 17 O -0.958 6.958 18 C -1.008 5.008 19 C -0.010 4.010 20 C -0.178 4.178 21 C -0.266 4.266 22 Cl 0.036 6.964 23 S 0.520 5.480 24 H 0.084 0.916 25 H 0.234 0.766 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.112 0.888 29 H 0.109 0.891 30 H 0.268 0.732 31 H 0.203 0.797 32 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 13.535 -20.004 5.295 24.726 hybrid contribution -0.288 0.016 1.718 1.742 sum 13.247 -19.988 7.013 24.984 Atomic orbital electron populations 1.70186 1.09535 1.28930 1.36551 1.26973 0.95506 1.04997 0.91247 0.85019 0.78823 0.75117 0.79327 1.18803 1.20019 1.17037 1.21448 0.94907 0.89948 1.54538 0.89094 1.18592 0.86819 0.84292 0.76060 1.90563 1.16256 1.87907 1.57158 1.45655 1.09575 1.04334 1.81437 1.21006 0.94616 0.83442 1.00721 1.21424 0.94175 0.81505 1.04041 1.55160 1.22387 1.20654 1.88402 1.00292 0.72275 0.71710 0.72569 1.93589 1.74202 1.85278 1.43548 1.93582 1.60141 1.55050 1.86992 1.35837 1.17525 1.23354 1.24049 1.20218 1.01117 0.90975 0.88692 1.20746 0.90339 1.02943 1.03800 1.26174 0.93883 1.06645 0.99876 1.98416 1.26017 1.96977 1.75008 1.84608 1.01012 1.50055 1.12326 0.91614 0.76627 0.94019 0.93131 0.88843 0.89104 0.73244 0.79709 0.79703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.64 11.83 21.83 0.26 -49.38 16 2 C 0.03 1.52 5.50 85.30 0.47 1.99 16 3 Si 1.00 39.94 29.56 68.60 2.03 41.96 16 4 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 5 H -0.28 -10.71 7.11 99.48 0.71 -10.01 16 6 H -0.25 -9.10 7.11 99.48 0.71 -8.39 16 7 C -0.57 -31.36 9.54 24.83 0.24 -31.12 16 8 H 0.09 4.40 7.85 -2.91 -0.02 4.38 16 9 C 0.54 30.14 7.75 86.36 0.67 30.81 16 10 O -0.63 -41.34 15.02 -4.31 -0.06 -41.40 16 11 N -0.75 -31.34 5.55 -467.41 -2.59 -33.93 16 12 C 0.13 4.42 5.82 86.38 0.50 4.92 16 13 C 0.12 2.69 6.34 86.38 0.55 3.24 16 14 N -1.10 -22.26 6.00 -187.49 -1.12 -23.39 16 15 S 2.75 58.44 5.88 -56.49 -0.33 58.11 16 16 O -0.98 -26.69 17.38 -128.00 -2.22 -28.92 16 17 O -0.97 -23.90 17.80 -128.00 -2.28 -26.18 16 18 C -0.80 -14.15 6.54 66.71 0.44 -13.71 16 19 C 0.03 0.34 9.84 21.22 0.21 0.55 16 20 C -0.15 -1.78 10.13 21.25 0.22 -1.56 16 21 C -0.12 -1.77 7.10 66.75 0.47 -1.30 16 22 Cl 0.01 0.10 29.29 -2.72 -0.08 0.02 16 23 S 0.26 4.41 23.22 -56.49 -1.31 3.10 16 24 H 0.27 14.99 8.29 -92.71 -0.77 14.22 16 25 H 0.40 13.70 8.45 -92.71 -0.78 12.91 16 26 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 27 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 29 H 0.09 2.06 7.75 -2.39 -0.02 2.05 16 30 H 0.43 7.57 8.65 -96.74 -0.84 6.74 16 31 H 0.19 1.68 8.05 -2.91 -0.02 1.65 16 32 H 0.19 1.23 8.06 -2.91 -0.02 1.21 16 Total: -1.00 -81.36 332.92 -4.38 -85.74 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: -0.42 Total: 20.45 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: 3.76 Total: -6.18 kcal Atomic # 7 Polarization: -103.23 SS G_CDS: -3.46 Total: -106.69 kcal Atomic # 8 Polarization: -91.93 SS G_CDS: -4.57 Total: -96.50 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 2.03 Total: 41.96 kcal Atomic # 16 Polarization: 62.85 SS G_CDS: -1.64 Total: 61.21 kcal Atomic # 17 Polarization: 0.10 SS G_CDS: -0.08 Total: 0.02 kcal Total: -81.36 -4.38 -85.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185491063.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.586 kcal (2) G-P(sol) polarization free energy of solvation -81.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds