Wall clock time and date at job start Tue Mar 31 2020 21:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86793 * 120.00023 * 2 1 4 4 H 1.48508 * 109.47247 * 240.00132 * 3 2 1 5 5 H 1.48501 * 109.47326 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47114 * 119.99915 * 3 2 1 7 7 C 1.40048 * 119.99751 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99851 * 180.02562 * 7 2 1 9 9 C 1.46374 * 120.00233 * 0.02562 * 7 2 1 10 10 O 1.21686 * 120.00038 * 0.02562 * 9 7 2 11 11 N 1.34778 * 120.00187 * 180.02562 * 9 7 2 12 12 C 1.46497 * 120.00215 * 180.02562 * 11 9 7 13 13 H 1.09004 * 110.34975 * 327.13784 * 12 11 9 14 14 C 1.54593 * 110.31135 * 89.27981 * 12 11 9 15 15 C 1.54933 * 102.92591 * 96.96077 * 14 12 11 16 16 N 1.48538 * 103.22579 * 37.41127 * 15 14 12 17 17 C 1.39728 * 110.99876 * 200.28376 * 16 15 14 18 18 C 1.38886 * 120.08101 * 57.12036 * 17 16 15 19 19 C 1.38110 * 119.93884 * 179.74497 * 18 17 16 20 20 C 1.38301 * 120.08653 * 0.52976 * 19 18 17 21 21 C 1.38268 * 120.15370 * 359.74791 * 20 19 18 22 22 C 1.38193 * 120.06633 * 359.97438 * 21 20 19 23 23 Br 1.89106 * 120.04577 * 180.02562 * 22 21 20 24 24 C 1.47899 * 105.82096 * 320.79703 * 16 15 14 25 25 H 0.97002 * 120.00170 * 359.97438 * 1 2 3 26 26 H 0.97006 * 119.99493 * 359.97438 * 11 9 7 27 27 H 1.09007 * 110.72450 * 215.32067 * 14 12 11 28 28 H 1.09004 * 110.72461 * 338.59990 * 14 12 11 29 29 H 1.09007 * 110.66620 * 278.98326 * 15 14 12 30 30 H 1.08993 * 110.67451 * 155.84848 * 15 14 12 31 31 H 1.08007 * 120.03054 * 0.02562 * 18 17 16 32 32 H 1.08002 * 119.95819 * 180.25525 * 19 18 17 33 33 H 1.07995 * 119.92542 * 179.76460 * 20 19 18 34 34 H 1.08005 * 119.96976 * 179.97438 * 21 20 19 35 35 H 1.09004 * 109.91646 * 265.97786 * 24 16 15 36 36 H 1.09001 * 110.08341 * 144.77463 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0945 1.6964 -1.2126 5 1 1.2758 2.7464 0.0006 6 1 3.0945 1.6963 1.2125 7 6 2.0069 -1.2129 0.0005 8 1 3.0870 -1.2129 0.0010 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4805 -0.0004 11 7 1.9489 -3.6477 0.0016 12 6 1.2164 -4.9164 0.0010 13 1 0.2828 -4.8154 0.5545 14 6 0.9340 -5.3724 -1.4489 15 6 2.0836 -6.3730 -1.7277 16 7 2.2484 -7.0721 -0.4274 17 6 3.5066 -7.6732 -0.3381 18 6 4.6560 -6.9071 -0.4828 19 6 5.8982 -7.5033 -0.3887 20 6 5.9987 -8.8638 -0.1616 21 6 4.8569 -9.6311 -0.0227 22 6 3.6108 -9.0400 -0.1100 23 35 2.0495 -10.0898 0.0808 24 6 2.0821 -6.0337 0.6125 25 1 -0.4850 0.8400 0.0004 26 1 2.9190 -3.6477 0.0020 27 1 -0.0341 -5.8688 -1.5155 28 1 0.9833 -4.5272 -2.1355 29 1 2.9972 -5.8437 -1.9983 30 1 1.7996 -7.0772 -2.5097 31 1 4.5785 -5.8452 -0.6642 32 1 6.7922 -6.9072 -0.4971 33 1 6.9714 -9.3280 -0.0923 34 1 4.9389 -10.6934 0.1542 35 1 3.0555 -5.6349 0.8982 36 1 1.5828 -6.4546 1.4853 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185931592.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:14 Heat of formation + Delta-G solvation = 3.608454 kcal Electronic energy + Delta-G solvation = -20849.392374 eV Core-core repulsion = 17572.680263 eV Total energy + Delta-G solvation = -3276.712111 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.037 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.38651 -38.27347 -36.65939 -33.47724 -32.45781 -32.26826 -30.95552 -29.51171 -28.49213 -27.76641 -25.87416 -23.34313 -22.17343 -21.04749 -20.63603 -19.28630 -17.46123 -17.26268 -16.11048 -15.85943 -15.40362 -15.08419 -14.57696 -14.21101 -13.90243 -13.71590 -13.57289 -13.10619 -12.60307 -12.41339 -12.16264 -11.95996 -11.68217 -11.46934 -11.28152 -11.18869 -10.92588 -10.91341 -10.78920 -10.50632 -10.47672 -10.25723 -10.09841 -9.03141 -8.87680 -8.69838 -8.58415 -7.65403 -7.56093 -6.21303 -4.67742 0.92100 1.01723 1.68308 3.13243 3.18540 3.20084 3.37192 3.80093 4.08479 4.54414 4.61472 4.73964 4.80024 4.86597 5.04371 5.11923 5.18326 5.34367 5.45050 5.49766 5.55493 5.74495 5.81352 5.86875 5.94440 6.06910 6.16213 6.19380 6.30873 6.49268 6.55984 6.64269 6.77575 7.25663 7.39930 7.86607 8.06071 8.28370 8.99310 9.47879 10.56888 10.75267 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.023032 B = 0.003018 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.432307 B = 9275.596832 C =10191.487377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.066 0.934 9 C 0.555 3.445 10 O -0.577 6.577 11 N -0.760 5.760 12 C 0.148 3.852 13 H 0.090 0.910 14 C -0.130 4.130 15 C 0.042 3.958 16 N -0.480 5.480 17 C 0.116 3.884 18 C -0.144 4.144 19 C -0.096 4.096 20 C -0.123 4.123 21 C -0.091 4.091 22 C -0.071 4.071 23 Br -0.038 7.038 24 C 0.037 3.963 25 H 0.269 0.731 26 H 0.376 0.624 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.050 0.950 30 H 0.080 0.920 31 H 0.132 0.868 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.132 0.868 35 H 0.055 0.945 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.051 -20.070 -1.078 22.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.584 4.584 8 H 0.084 0.916 9 C 0.360 3.640 10 O -0.460 6.460 11 N -0.415 5.415 12 C 0.041 3.959 13 H 0.108 0.892 14 C -0.170 4.170 15 C -0.083 4.083 16 N -0.202 5.202 17 C 0.020 3.980 18 C -0.164 4.164 19 C -0.115 4.115 20 C -0.142 4.142 21 C -0.111 4.111 22 C -0.152 4.152 23 Br 0.048 6.952 24 C -0.090 4.090 25 H 0.080 0.920 26 H 0.208 0.792 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.068 0.932 30 H 0.099 0.901 31 H 0.150 0.850 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.073 0.927 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.942 -20.749 -0.931 22.613 hybrid contribution 2.006 1.642 -0.135 2.596 sum 10.949 -19.107 -1.066 22.047 Atomic orbital electron populations 1.70005 1.07022 1.27403 1.35109 1.25690 0.94609 1.00235 0.92627 0.86451 0.79841 0.81138 0.79407 1.19324 1.20533 1.19313 1.20839 0.93469 0.89461 1.54596 0.91625 1.18201 0.87244 0.82353 0.76241 1.90607 1.13998 1.86717 1.54672 1.46300 1.08102 1.04654 1.82466 1.21267 0.96055 0.83889 0.94700 0.89190 1.22950 0.97537 0.98014 0.98470 1.23359 0.98868 0.95705 0.90388 1.62570 1.24138 1.29129 1.04375 1.18859 0.89875 0.92042 0.97259 1.21770 0.92616 1.00769 1.01292 1.21185 0.97491 0.94964 0.97898 1.21153 0.98218 0.93998 1.00853 1.21076 0.90612 1.00319 0.99115 1.21831 0.92690 0.93366 1.07278 1.96684 1.34978 1.67049 1.96494 1.23315 1.00076 0.90885 0.94721 0.92020 0.79229 0.90753 0.90101 0.93214 0.90142 0.85023 0.85419 0.85278 0.84969 0.92717 0.89549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.73 11.83 55.55 0.66 -22.08 16 2 C 0.09 2.43 5.50 -17.37 -0.10 2.33 16 3 Si 0.91 19.87 29.56 -169.99 -5.02 14.84 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.55 -15.10 9.54 -35.63 -0.34 -15.44 16 8 H 0.07 1.66 7.85 -52.48 -0.41 1.24 16 9 C 0.56 15.30 7.75 -12.99 -0.10 15.20 16 10 O -0.58 -18.24 14.67 5.20 0.08 -18.16 16 11 N -0.76 -16.16 5.05 -53.90 -0.27 -16.44 16 12 C 0.15 2.75 3.34 -66.58 -0.22 2.52 16 13 H 0.09 1.92 7.56 -51.93 -0.39 1.52 16 14 C -0.13 -2.19 6.78 -24.87 -0.17 -2.36 16 15 C 0.04 0.60 6.41 -1.90 -0.01 0.58 16 16 N -0.48 -6.71 4.54 -167.13 -0.76 -7.46 16 17 C 0.12 1.49 4.84 -83.75 -0.41 1.09 16 18 C -0.14 -1.65 7.90 -39.39 -0.31 -1.96 16 19 C -0.10 -0.91 10.04 -39.61 -0.40 -1.31 16 20 C -0.12 -1.07 10.04 -39.55 -0.40 -1.47 16 21 C -0.09 -0.89 9.78 -39.59 -0.39 -1.28 16 22 C -0.07 -0.85 6.24 -39.33 -0.25 -1.10 16 23 Br -0.04 -0.45 33.08 -68.01 -2.25 -2.70 16 24 C 0.04 0.55 6.29 -2.75 -0.02 0.53 16 25 H 0.27 7.27 8.29 -40.82 -0.34 6.93 16 26 H 0.38 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.07 1.22 8.14 -51.92 -0.42 0.80 16 28 H 0.08 1.53 8.05 -51.93 -0.42 1.11 16 29 H 0.05 0.68 6.63 -51.93 -0.34 0.34 16 30 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.13 1.51 7.05 -52.48 -0.37 1.14 16 32 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 34 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 35 H 0.05 0.80 6.20 -51.93 -0.32 0.48 16 36 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 323.06 15.07 4.87 4.87 Total: -1.00 -32.69 323.06 -10.07 -42.77 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -4.27 Total: 7.02 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -3.10 Total: -2.65 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: -0.37 Total: -45.98 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: 0.08 Total: -18.16 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.84 kcal Atomic # 35 Polarization: -0.45 SS G_CDS: -2.25 Total: -2.70 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.69 -10.07 -42.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185931592.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.374 kcal (2) G-P(sol) polarization free energy of solvation -32.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds