Wall clock time and date at job start Tue Mar 31 2020 21:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86793 * 120.00023 * 2 1 4 4 H 1.48508 * 109.47247 * 240.00132 * 3 2 1 5 5 H 1.48501 * 109.47326 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47114 * 119.99915 * 3 2 1 7 7 C 1.40048 * 119.99751 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99851 * 180.02562 * 7 2 1 9 9 C 1.46374 * 120.00233 * 0.02562 * 7 2 1 10 10 O 1.21686 * 120.00038 * 0.02562 * 9 7 2 11 11 N 1.34778 * 120.00187 * 180.02562 * 9 7 2 12 12 C 1.46497 * 120.00215 * 180.02562 * 11 9 7 13 13 H 1.09004 * 110.34975 * 327.13784 * 12 11 9 14 14 C 1.54593 * 110.31135 * 89.27981 * 12 11 9 15 15 C 1.54933 * 102.92591 * 96.96077 * 14 12 11 16 16 N 1.48538 * 103.22579 * 37.41127 * 15 14 12 17 17 C 1.39728 * 110.99876 * 200.28376 * 16 15 14 18 18 C 1.38886 * 120.08101 * 57.12036 * 17 16 15 19 19 C 1.38110 * 119.93884 * 179.74497 * 18 17 16 20 20 C 1.38301 * 120.08653 * 0.52976 * 19 18 17 21 21 C 1.38268 * 120.15370 * 359.74791 * 20 19 18 22 22 C 1.38193 * 120.06633 * 359.97438 * 21 20 19 23 23 Br 1.89106 * 120.04577 * 180.02562 * 22 21 20 24 24 C 1.47899 * 105.82096 * 320.79703 * 16 15 14 25 25 H 0.97002 * 120.00170 * 359.97438 * 1 2 3 26 26 H 0.97006 * 119.99493 * 359.97438 * 11 9 7 27 27 H 1.09007 * 110.72450 * 215.32067 * 14 12 11 28 28 H 1.09004 * 110.72461 * 338.59990 * 14 12 11 29 29 H 1.09007 * 110.66620 * 278.98326 * 15 14 12 30 30 H 1.08993 * 110.67451 * 155.84848 * 15 14 12 31 31 H 1.08007 * 120.03054 * 0.02562 * 18 17 16 32 32 H 1.08002 * 119.95819 * 180.25525 * 19 18 17 33 33 H 1.07995 * 119.92542 * 179.76460 * 20 19 18 34 34 H 1.08005 * 119.96976 * 179.97438 * 21 20 19 35 35 H 1.09004 * 109.91646 * 265.97786 * 24 16 15 36 36 H 1.09001 * 110.08341 * 144.77463 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0945 1.6964 -1.2126 5 1 1.2758 2.7464 0.0006 6 1 3.0945 1.6963 1.2125 7 6 2.0069 -1.2129 0.0005 8 1 3.0870 -1.2129 0.0010 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4805 -0.0004 11 7 1.9489 -3.6477 0.0016 12 6 1.2164 -4.9164 0.0010 13 1 0.2828 -4.8154 0.5545 14 6 0.9340 -5.3724 -1.4489 15 6 2.0836 -6.3730 -1.7277 16 7 2.2484 -7.0721 -0.4274 17 6 3.5066 -7.6732 -0.3381 18 6 4.6560 -6.9071 -0.4828 19 6 5.8982 -7.5033 -0.3887 20 6 5.9987 -8.8638 -0.1616 21 6 4.8569 -9.6311 -0.0227 22 6 3.6108 -9.0400 -0.1100 23 35 2.0495 -10.0898 0.0808 24 6 2.0821 -6.0337 0.6125 25 1 -0.4850 0.8400 0.0004 26 1 2.9190 -3.6477 0.0020 27 1 -0.0341 -5.8688 -1.5155 28 1 0.9833 -4.5272 -2.1355 29 1 2.9972 -5.8437 -1.9983 30 1 1.7996 -7.0772 -2.5097 31 1 4.5785 -5.8452 -0.6642 32 1 6.7922 -6.9072 -0.4971 33 1 6.9714 -9.3280 -0.0923 34 1 4.9389 -10.6934 0.1542 35 1 3.0555 -5.6349 0.8982 36 1 1.5828 -6.4546 1.4853 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185931592.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:14 Heat of formation + Delta-G solvation = -18.149611 kcal Electronic energy + Delta-G solvation = -20850.335874 eV Core-core repulsion = 17572.680263 eV Total energy + Delta-G solvation = -3277.655611 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.037 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.45371 -39.66400 -38.32537 -35.11744 -34.40606 -33.21836 -32.33232 -30.40502 -29.80906 -29.07351 -27.74451 -24.31989 -23.07289 -22.73054 -21.72115 -21.03849 -19.23450 -18.39814 -17.56582 -17.12940 -16.83421 -16.29399 -15.97614 -15.51391 -15.21699 -14.91068 -14.60772 -14.38142 -14.30144 -14.14711 -13.29188 -13.23126 -13.10710 -12.85788 -12.64700 -12.53451 -12.51204 -12.29835 -12.24212 -12.03941 -11.98073 -11.70878 -10.99277 -10.91651 -9.89590 -9.84556 -9.66078 -9.55037 -9.45640 -8.28384 -6.85405 0.10776 0.22653 0.82436 1.40193 1.43320 1.55000 2.24057 2.47550 2.58784 2.68725 3.15624 3.53339 3.60020 3.86048 3.94999 4.04446 4.11182 4.21582 4.30183 4.36134 4.40857 4.53322 4.65483 4.79440 4.80896 4.92880 5.06719 5.13681 5.21358 5.31708 5.33577 5.44316 5.52950 5.73385 5.87413 6.21033 6.25271 6.29376 6.87263 7.53673 8.50230 8.68100 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.023032 B = 0.003018 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.432307 B = 9275.596832 C =10191.487377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.030 3.970 3 Si 0.996 3.004 4 H -0.254 1.254 5 H -0.276 1.276 6 H -0.255 1.255 7 C -0.574 4.574 8 H 0.087 0.913 9 C 0.541 3.459 10 O -0.629 6.629 11 N -0.745 5.745 12 C 0.145 3.855 13 H 0.054 0.946 14 C -0.125 4.125 15 C 0.056 3.944 16 N -0.479 5.479 17 C 0.090 3.910 18 C -0.154 4.154 19 C -0.094 4.094 20 C -0.112 4.112 21 C -0.092 4.092 22 C -0.085 4.085 23 Br -0.047 7.047 24 C 0.053 3.947 25 H 0.274 0.726 26 H 0.391 0.609 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.093 0.907 31 H 0.128 0.872 32 H 0.153 0.847 33 H 0.163 0.837 34 H 0.152 0.848 35 H 0.063 0.937 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.538 -20.677 -1.185 25.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.185 4.185 3 Si 0.815 3.185 4 H -0.178 1.178 5 H -0.201 1.201 6 H -0.179 1.179 7 C -0.610 4.610 8 H 0.105 0.895 9 C 0.346 3.654 10 O -0.516 6.516 11 N -0.399 5.399 12 C 0.038 3.962 13 H 0.073 0.927 14 C -0.165 4.165 15 C -0.070 4.070 16 N -0.200 5.200 17 C -0.006 4.006 18 C -0.175 4.175 19 C -0.113 4.113 20 C -0.131 4.131 21 C -0.112 4.112 22 C -0.165 4.165 23 Br 0.038 6.962 24 C -0.074 4.074 25 H 0.084 0.916 26 H 0.225 0.775 27 H 0.093 0.907 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.111 0.889 31 H 0.146 0.854 32 H 0.170 0.830 33 H 0.181 0.819 34 H 0.170 0.830 35 H 0.081 0.919 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 12.482 -21.415 -1.040 24.809 hybrid contribution 0.981 1.707 -0.097 1.971 sum 13.463 -19.708 -1.137 23.894 Atomic orbital electron populations 1.70183 1.09503 1.28950 1.36448 1.26943 0.95481 1.04885 0.91237 0.85098 0.78217 0.74887 0.80259 1.17818 1.20076 1.17864 1.21394 0.94677 0.90115 1.54850 0.89512 1.18552 0.86833 0.84203 0.75861 1.90564 1.16181 1.87840 1.57000 1.45901 1.08748 1.04258 1.80970 1.21320 0.95182 0.83833 0.95848 0.92723 1.22804 0.99105 0.97972 0.96605 1.23237 0.97612 0.95125 0.91006 1.62507 1.25819 1.28152 1.03559 1.18906 0.89423 0.92588 0.99699 1.21816 0.93152 1.00603 1.01881 1.21512 0.97464 0.95681 0.96660 1.21568 0.99290 0.93606 0.98602 1.21390 0.90040 1.01500 0.98261 1.21980 0.93310 0.93090 1.08136 1.96673 1.35824 1.67098 1.96568 1.23077 0.99538 0.89928 0.94879 0.91624 0.77483 0.90707 0.92578 0.92584 0.88873 0.85443 0.82964 0.81919 0.83044 0.91857 0.89464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.20 11.83 21.84 0.26 -49.94 16 2 C 0.03 1.65 5.50 85.30 0.47 2.11 16 3 Si 1.00 40.50 29.56 68.60 2.03 42.53 16 4 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 5 H -0.28 -10.90 7.11 99.48 0.71 -10.20 16 6 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 7 C -0.57 -32.03 9.54 24.83 0.24 -31.79 16 8 H 0.09 4.30 7.85 -2.91 -0.02 4.28 16 9 C 0.54 30.90 7.75 86.36 0.67 31.57 16 10 O -0.63 -41.85 14.67 -4.30 -0.06 -41.92 16 11 N -0.74 -32.48 5.05 -442.65 -2.24 -34.72 16 12 C 0.14 5.58 3.34 45.87 0.15 5.74 16 13 H 0.05 2.49 7.56 -2.39 -0.02 2.48 16 14 C -0.13 -4.38 6.78 31.80 0.22 -4.16 16 15 C 0.06 1.54 6.41 86.65 0.56 2.10 16 16 N -0.48 -13.05 4.54 -682.68 -3.10 -16.15 16 17 C 0.09 2.17 4.84 38.21 0.18 2.35 16 18 C -0.15 -3.20 7.90 22.39 0.18 -3.02 16 19 C -0.09 -1.45 10.04 22.25 0.22 -1.22 16 20 C -0.11 -1.49 10.04 22.29 0.22 -1.26 16 21 C -0.09 -1.51 9.78 22.27 0.22 -1.29 16 22 C -0.08 -1.87 6.24 22.43 0.14 -1.73 16 23 Br -0.05 -1.08 33.08 -20.37 -0.67 -1.75 16 24 C 0.05 1.59 6.29 86.45 0.54 2.13 16 25 H 0.27 15.23 8.29 -92.71 -0.77 14.46 16 26 H 0.39 14.65 8.31 -92.70 -0.77 13.88 16 27 H 0.07 2.57 8.14 -2.38 -0.02 2.55 16 28 H 0.06 2.23 8.05 -2.38 -0.02 2.21 16 29 H 0.06 1.48 6.63 -2.38 -0.02 1.47 16 30 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.13 2.69 7.05 -2.91 -0.02 2.67 16 32 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 33 H 0.16 1.08 8.06 -2.91 -0.02 1.06 16 34 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 35 H 0.06 1.80 6.20 -2.39 -0.01 1.78 16 36 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 Total: -1.00 -74.03 323.06 0.56 -73.47 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: 0.34 Total: 26.97 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: 4.01 Total: 1.51 kcal Atomic # 7 Polarization: -95.73 SS G_CDS: -5.08 Total: -100.81 kcal Atomic # 8 Polarization: -41.85 SS G_CDS: -0.06 Total: -41.92 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Atomic # 35 Polarization: -1.08 SS G_CDS: -0.67 Total: -1.75 kcal Total: -74.03 0.56 -73.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185931592.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.317 kcal (2) G-P(sol) polarization free energy of solvation -74.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds