Wall clock time and date at job start Tue Mar 31 2020 20:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 120.00152 * 2 1 4 4 H 1.48498 * 109.47112 * 270.00058 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00326 * 3 2 1 6 6 H 1.48494 * 109.47201 * 150.00300 * 3 2 1 7 7 C 1.38950 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00299 * 359.97438 * 7 2 1 9 9 N 1.37104 * 120.00030 * 179.97438 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 N 1.46899 * 109.46987 * 179.97438 * 12 10 9 14 14 C 1.47163 * 111.00233 * 170.00045 * 13 12 10 15 15 C 1.52890 * 108.50757 * 52.14039 * 14 13 12 16 16 C 1.50718 * 109.96785 * 50.37625 * 15 14 13 17 17 C 1.38663 * 118.48457 * 163.14785 * 16 15 14 18 18 C 1.38125 * 120.34108 * 179.86039 * 17 16 15 19 19 Br 1.89093 * 120.09453 * 179.97438 * 18 17 16 20 20 C 1.38347 * 119.80693 * 359.95955 * 18 17 16 21 21 C 1.37998 * 119.85697 * 0.06688 * 20 18 17 22 22 C 1.37838 * 121.65572 * 343.12974 * 16 15 14 23 23 C 1.46642 * 110.99810 * 292.97627 * 13 12 10 24 24 H 0.96999 * 119.99993 * 359.97438 * 1 2 3 25 25 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 26 26 H 1.09003 * 109.47112 * 299.99065 * 12 10 9 27 27 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 28 28 H 1.09000 * 109.62975 * 171.84768 * 14 13 12 29 29 H 1.09002 * 109.62558 * 292.43169 * 14 13 12 30 30 H 1.09003 * 109.39122 * 170.53170 * 15 14 13 31 31 H 1.09001 * 109.38842 * 290.22303 * 15 14 13 32 32 H 1.07999 * 119.82921 * 359.84426 * 17 16 15 33 33 H 1.08005 * 120.07005 * 180.08812 * 20 18 17 34 34 H 1.07997 * 119.80063 * 180.02562 * 21 20 18 35 35 H 1.08998 * 109.30078 * 49.47224 * 23 13 12 36 36 H 1.08998 * 109.30016 * 168.85071 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4457 2.6526 0.7001 6 1 3.5457 1.4401 0.6999 7 6 2.0089 -1.2034 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3799 -1.2034 -0.0011 10 6 4.0537 -2.3706 -0.0072 11 8 3.4473 -3.4211 -0.0072 12 6 5.5607 -2.3705 -0.0141 13 7 6.0504 -3.7555 -0.0194 14 6 7.5007 -3.8012 -0.2646 15 6 8.1904 -2.8646 0.7276 16 6 7.7144 -3.1568 2.1275 17 6 8.4605 -2.6771 3.1933 18 6 8.0580 -2.9200 4.4921 19 35 9.0811 -2.2631 5.9403 20 6 6.9040 -3.6449 4.7303 21 6 6.1617 -4.1228 3.6696 22 6 6.5665 -3.8820 2.3646 23 6 5.7274 -4.4319 1.2411 24 1 -0.4850 0.8400 0.0004 25 1 3.8649 -0.3633 -0.0014 26 1 5.9200 -1.8545 -0.9044 27 1 5.9282 -1.8591 0.8755 28 1 7.8644 -4.8187 -0.1212 29 1 7.7103 -3.4745 -1.2832 30 1 9.2692 -3.0116 0.6741 31 1 7.9546 -1.8312 0.4735 32 1 9.3611 -2.1109 3.0070 33 1 6.5846 -3.8361 5.7441 34 1 5.2608 -4.6883 3.8566 35 1 4.6728 -4.2806 1.4711 36 1 5.9207 -5.4995 1.1368 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192248305.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:40 Heat of formation + Delta-G solvation = 4.221385 kcal Electronic energy + Delta-G solvation = -21119.600793 eV Core-core repulsion = 17842.915261 eV Total energy + Delta-G solvation = -3276.685532 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.037 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.66286 -38.47036 -36.91452 -34.00071 -32.85530 -32.37446 -31.67422 -29.94056 -29.37832 -27.75182 -24.71096 -24.03439 -22.70922 -22.34275 -19.94295 -19.10148 -18.06782 -16.81305 -16.11183 -16.01347 -15.46405 -14.92015 -14.83274 -14.46863 -14.32429 -13.87421 -13.47562 -13.29854 -13.19890 -12.74248 -12.55321 -12.39782 -12.10576 -11.89247 -11.64416 -11.56240 -11.29808 -11.02782 -10.88003 -10.61801 -10.59842 -10.45541 -9.98265 -9.55448 -8.97520 -8.64762 -8.53761 -8.18695 -8.05337 -6.31752 -3.83011 0.95401 1.13434 1.45194 3.02464 3.06381 3.14787 3.42324 3.72536 3.91970 4.09960 4.44417 4.65902 4.72774 4.75240 4.91415 4.99932 5.13264 5.20946 5.23922 5.33855 5.51824 5.62335 5.66724 5.72792 5.76065 5.82066 5.92175 5.94570 6.02365 6.11038 6.14294 6.45240 6.70716 7.09783 7.17800 7.57633 8.13787 8.59376 8.94474 9.41971 9.82280 10.81347 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.013768 B = 0.003448 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.268615 B = 8118.976027 C = 9156.353257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.043 3.957 3 Si 0.877 3.123 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.270 1.270 7 C -0.304 4.304 8 H 0.120 0.880 9 N -0.590 5.590 10 C 0.453 3.547 11 O -0.561 6.561 12 C 0.036 3.964 13 N -0.500 5.500 14 C 0.051 3.949 15 C -0.120 4.120 16 C -0.078 4.078 17 C -0.089 4.089 18 C -0.095 4.095 19 Br -0.060 7.060 20 C -0.093 4.093 21 C -0.105 4.105 22 C -0.087 4.087 23 C 0.082 3.918 24 H 0.273 0.727 25 H 0.370 0.630 26 H 0.090 0.910 27 H 0.054 0.946 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.135 0.865 35 H 0.117 0.883 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.051 -4.069 8.839 24.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.160 4.160 3 Si 0.704 3.296 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.433 4.433 8 H 0.138 0.862 9 N -0.230 5.230 10 C 0.239 3.761 11 O -0.443 6.443 12 C -0.095 4.095 13 N -0.221 5.221 14 C -0.077 4.077 15 C -0.158 4.158 16 C -0.079 4.079 17 C -0.109 4.109 18 C -0.174 4.174 19 Br 0.025 6.975 20 C -0.113 4.113 21 C -0.124 4.124 22 C -0.089 4.089 23 C -0.046 4.046 24 H 0.084 0.916 25 H 0.202 0.798 26 H 0.109 0.891 27 H 0.072 0.928 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.152 0.848 35 H 0.135 0.865 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 21.552 -4.669 8.964 23.804 hybrid contribution 0.832 1.873 0.534 2.118 sum 22.384 -2.797 9.498 24.476 Atomic orbital electron populations 1.69618 1.05624 1.27486 1.49373 1.25022 0.95464 0.97914 0.97636 0.86705 0.79820 0.84170 0.78928 1.19551 1.20158 1.19550 1.19427 0.79192 0.96621 1.48067 0.86222 1.42214 1.07546 1.06148 1.67046 1.19624 0.88036 0.84548 0.83896 1.90526 1.69379 1.30761 1.53624 1.21975 0.95557 0.90190 1.01796 1.62224 1.12170 1.15125 1.32565 1.22317 0.87112 0.99691 0.98567 1.21187 1.01241 1.01677 0.91736 1.19549 0.94687 0.98443 0.95207 1.20991 0.99973 0.99559 0.90390 1.21638 0.98314 1.05002 0.92418 1.96682 1.70804 1.86802 1.43203 1.21046 0.93318 0.96920 0.99967 1.21176 0.99867 0.99946 0.91447 1.20821 0.94990 0.96519 0.96566 1.21441 1.00766 0.98246 0.84142 0.91614 0.79762 0.89138 0.92834 0.90165 0.89721 0.90047 0.89987 0.85341 0.85096 0.84760 0.86508 0.89160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.63 13.96 55.50 0.77 -24.85 16 2 C 0.04 1.16 5.50 -17.47 -0.10 1.07 16 3 Si 0.88 19.37 27.74 -169.99 -4.71 14.65 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.27 -5.48 6.52 56.52 0.37 -5.11 16 7 C -0.30 -8.53 10.16 -14.93 -0.15 -8.68 16 8 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 9 N -0.59 -13.95 5.09 -10.96 -0.06 -14.00 16 10 C 0.45 10.08 7.40 -10.99 -0.08 10.00 16 11 O -0.56 -14.49 14.06 5.55 0.08 -14.41 16 12 C 0.04 0.59 4.41 -4.98 -0.02 0.57 16 13 N -0.50 -7.56 4.74 -237.63 -1.13 -8.69 16 14 C 0.05 0.57 6.02 -3.74 -0.02 0.54 16 15 C -0.12 -1.21 5.16 -27.93 -0.14 -1.35 16 16 C -0.08 -0.94 5.05 -104.60 -0.53 -1.47 16 17 C -0.09 -1.02 9.40 -39.47 -0.37 -1.40 16 18 C -0.09 -1.11 6.22 -39.58 -0.25 -1.36 16 19 Br -0.06 -0.63 33.71 -68.01 -2.29 -2.92 16 20 C -0.09 -1.09 9.79 -39.63 -0.39 -1.48 16 21 C -0.10 -1.32 9.65 -39.48 -0.38 -1.70 16 22 C -0.09 -1.16 5.19 -104.62 -0.54 -1.70 16 23 C 0.08 1.22 5.18 -5.15 -0.03 1.19 16 24 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.37 7.75 5.76 -40.82 -0.24 7.51 16 26 H 0.09 1.29 8.08 -51.93 -0.42 0.87 16 27 H 0.05 0.84 5.91 -51.93 -0.31 0.53 16 28 H 0.08 0.81 8.05 -51.93 -0.42 0.39 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.82 7.06 -51.93 -0.37 0.45 16 32 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.13 1.32 8.06 -52.48 -0.42 0.89 16 34 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 35 H 0.12 2.13 5.85 -51.93 -0.30 1.82 16 36 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 314.18 15.07 4.73 4.73 Total: -1.00 -31.49 314.18 -9.75 -41.24 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -4.14 Total: 10.01 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -3.00 Total: -5.76 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: -0.41 Total: -47.54 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: 0.08 Total: -14.41 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.71 Total: 14.65 kcal Atomic # 35 Polarization: -0.63 SS G_CDS: -2.29 Total: -2.92 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.49 -9.75 -41.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192248305.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.463 kcal (2) G-P(sol) polarization free energy of solvation -31.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds