Wall clock time and date at job start Tue Mar 31 2020 20:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 120.00152 * 2 1 4 4 H 1.48498 * 109.47112 * 270.00058 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00326 * 3 2 1 6 6 H 1.48494 * 109.47201 * 150.00300 * 3 2 1 7 7 C 1.38950 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00299 * 359.97438 * 7 2 1 9 9 N 1.37104 * 120.00030 * 179.97438 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 N 1.46899 * 109.46987 * 179.97438 * 12 10 9 14 14 C 1.47163 * 111.00233 * 170.00045 * 13 12 10 15 15 C 1.52890 * 108.50757 * 52.14039 * 14 13 12 16 16 C 1.50718 * 109.96785 * 50.37625 * 15 14 13 17 17 C 1.38663 * 118.48457 * 163.14785 * 16 15 14 18 18 C 1.38125 * 120.34108 * 179.86039 * 17 16 15 19 19 Br 1.89093 * 120.09453 * 179.97438 * 18 17 16 20 20 C 1.38347 * 119.80693 * 359.95955 * 18 17 16 21 21 C 1.37998 * 119.85697 * 0.06688 * 20 18 17 22 22 C 1.37838 * 121.65572 * 343.12974 * 16 15 14 23 23 C 1.46642 * 110.99810 * 292.97627 * 13 12 10 24 24 H 0.96999 * 119.99993 * 359.97438 * 1 2 3 25 25 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 26 26 H 1.09003 * 109.47112 * 299.99065 * 12 10 9 27 27 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 28 28 H 1.09000 * 109.62975 * 171.84768 * 14 13 12 29 29 H 1.09002 * 109.62558 * 292.43169 * 14 13 12 30 30 H 1.09003 * 109.39122 * 170.53170 * 15 14 13 31 31 H 1.09001 * 109.38842 * 290.22303 * 15 14 13 32 32 H 1.07999 * 119.82921 * 359.84426 * 17 16 15 33 33 H 1.08005 * 120.07005 * 180.08812 * 20 18 17 34 34 H 1.07997 * 119.80063 * 180.02562 * 21 20 18 35 35 H 1.08998 * 109.30078 * 49.47224 * 23 13 12 36 36 H 1.08998 * 109.30016 * 168.85071 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4457 2.6526 0.7001 6 1 3.5457 1.4401 0.6999 7 6 2.0089 -1.2034 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3799 -1.2034 -0.0011 10 6 4.0537 -2.3706 -0.0072 11 8 3.4473 -3.4211 -0.0072 12 6 5.5607 -2.3705 -0.0141 13 7 6.0504 -3.7555 -0.0194 14 6 7.5007 -3.8012 -0.2646 15 6 8.1904 -2.8646 0.7276 16 6 7.7144 -3.1568 2.1275 17 6 8.4605 -2.6771 3.1933 18 6 8.0580 -2.9200 4.4921 19 35 9.0811 -2.2631 5.9403 20 6 6.9040 -3.6449 4.7303 21 6 6.1617 -4.1228 3.6696 22 6 6.5665 -3.8820 2.3646 23 6 5.7274 -4.4319 1.2411 24 1 -0.4850 0.8400 0.0004 25 1 3.8649 -0.3633 -0.0014 26 1 5.9200 -1.8545 -0.9044 27 1 5.9282 -1.8591 0.8755 28 1 7.8644 -4.8187 -0.1212 29 1 7.7103 -3.4745 -1.2832 30 1 9.2692 -3.0116 0.6741 31 1 7.9546 -1.8312 0.4735 32 1 9.3611 -2.1109 3.0070 33 1 6.5846 -3.8361 5.7441 34 1 5.2608 -4.6883 3.8566 35 1 4.6728 -4.2806 1.4711 36 1 5.9207 -5.4995 1.1368 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192248305.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:39 Heat of formation + Delta-G solvation = -17.468340 kcal Electronic energy + Delta-G solvation = -21120.541330 eV Core-core repulsion = 17842.915261 eV Total energy + Delta-G solvation = -3277.626069 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.037 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.70210 -40.07122 -38.10065 -35.96271 -33.81817 -33.72255 -33.32344 -30.93690 -30.36645 -29.03724 -26.47611 -25.07148 -23.77830 -23.27292 -21.48701 -20.75892 -19.64721 -18.07616 -17.34235 -17.13074 -16.81321 -16.44393 -16.06275 -15.59923 -15.51857 -15.14235 -14.82902 -14.71759 -14.37047 -14.23433 -13.86722 -13.70273 -13.27459 -13.05692 -12.93937 -12.68834 -12.53864 -12.41196 -12.13511 -11.98541 -11.77062 -11.55872 -11.43555 -11.29079 -10.37042 -10.22590 -9.85540 -9.50247 -9.24478 -8.40594 -6.00790 0.01951 0.23850 0.57888 1.29534 1.34671 1.43153 1.96922 2.22701 2.50033 2.65898 3.15036 3.25081 3.61656 3.72295 3.82247 4.02922 4.13443 4.17312 4.25920 4.36025 4.39204 4.51216 4.51774 4.62846 4.79735 4.92768 4.96409 4.97973 5.10789 5.16098 5.20317 5.46545 5.54577 5.79114 5.91169 6.02381 6.14957 6.60702 6.89585 7.41059 7.97954 8.77081 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.013768 B = 0.003448 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.268615 B = 8118.976027 C = 9156.353257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.013 4.013 3 Si 0.960 3.040 4 H -0.254 1.254 5 H -0.276 1.276 6 H -0.235 1.235 7 C -0.326 4.326 8 H 0.057 0.943 9 N -0.593 5.593 10 C 0.452 3.548 11 O -0.604 6.604 12 C 0.052 3.948 13 N -0.522 5.522 14 C 0.052 3.948 15 C -0.116 4.116 16 C -0.079 4.079 17 C -0.089 4.089 18 C -0.102 4.102 19 Br -0.048 7.048 20 C -0.099 4.099 21 C -0.119 4.119 22 C -0.103 4.103 23 C 0.090 3.910 24 H 0.279 0.721 25 H 0.388 0.612 26 H 0.124 0.876 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.111 0.889 31 H 0.091 0.909 32 H 0.151 0.849 33 H 0.143 0.857 34 H 0.132 0.868 35 H 0.073 0.927 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.146 -1.971 8.765 27.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.212 4.212 3 Si 0.780 3.220 4 H -0.179 1.179 5 H -0.201 1.201 6 H -0.159 1.159 7 C -0.455 4.455 8 H 0.075 0.925 9 N -0.235 5.235 10 C 0.240 3.760 11 O -0.488 6.488 12 C -0.079 4.079 13 N -0.243 5.243 14 C -0.075 4.075 15 C -0.154 4.154 16 C -0.080 4.080 17 C -0.109 4.109 18 C -0.181 4.181 19 Br 0.038 6.962 20 C -0.119 4.119 21 C -0.138 4.138 22 C -0.105 4.105 23 C -0.039 4.039 24 H 0.088 0.912 25 H 0.223 0.777 26 H 0.142 0.858 27 H 0.087 0.913 28 H 0.106 0.894 29 H 0.123 0.877 30 H 0.129 0.871 31 H 0.109 0.891 32 H 0.168 0.832 33 H 0.161 0.839 34 H 0.150 0.850 35 H 0.091 0.909 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 25.686 -2.590 8.893 27.305 hybrid contribution -0.463 1.038 0.601 1.286 sum 25.224 -1.552 9.494 26.996 Atomic orbital electron populations 1.69800 1.08065 1.29152 1.50515 1.26052 0.96405 1.02517 0.96191 0.85428 0.79402 0.77078 0.80045 1.17867 1.20084 1.15866 1.19002 0.81428 0.94926 1.50131 0.92493 1.42053 1.05848 1.07561 1.68047 1.20881 0.90795 0.83330 0.80995 1.90515 1.71247 1.32456 1.54574 1.21854 0.90280 0.91783 1.03964 1.62189 1.15299 1.14210 1.32633 1.22448 0.84193 1.00833 0.99990 1.21234 1.02782 1.01627 0.89738 1.19797 0.93945 0.97563 0.96708 1.21244 1.00455 0.99263 0.89911 1.21852 0.98297 1.04690 0.93275 1.96695 1.70289 1.86557 1.42673 1.21197 0.93463 0.96909 1.00281 1.21288 1.00224 1.00452 0.91866 1.20719 0.95884 0.97945 0.95977 1.21159 0.98614 0.98924 0.85185 0.91197 0.77715 0.85825 0.91283 0.89360 0.87747 0.87126 0.89079 0.83150 0.83942 0.84971 0.90899 0.88595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.47 13.96 21.66 0.30 -56.16 16 2 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 3 Si 0.96 39.00 27.74 68.60 1.90 40.90 16 4 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 5 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 6 H -0.24 -8.15 6.52 99.48 0.65 -7.50 16 7 C -0.33 -19.08 10.16 84.04 0.85 -18.23 16 8 H 0.06 3.96 7.39 -2.91 -0.02 3.94 16 9 N -0.59 -28.07 5.09 -306.98 -1.56 -29.63 16 10 C 0.45 20.32 7.40 87.66 0.65 20.97 16 11 O -0.60 -32.86 14.06 -3.07 -0.04 -32.91 16 12 C 0.05 1.60 4.41 85.56 0.38 1.98 16 13 N -0.52 -14.96 4.74 -905.74 -4.30 -19.25 16 14 C 0.05 0.97 6.02 86.22 0.52 1.49 16 15 C -0.12 -1.80 5.16 29.82 0.15 -1.65 16 16 C -0.08 -1.67 5.05 -19.85 -0.10 -1.77 16 17 C -0.09 -1.75 9.40 22.34 0.21 -1.54 16 18 C -0.10 -2.17 6.22 22.27 0.14 -2.03 16 19 Br -0.05 -0.88 33.71 -20.37 -0.69 -1.57 16 20 C -0.10 -2.22 9.79 22.24 0.22 -2.00 16 21 C -0.12 -2.99 9.65 22.33 0.22 -2.77 16 22 C -0.10 -2.65 5.19 -19.86 -0.10 -2.76 16 23 C 0.09 2.68 5.18 85.58 0.44 3.13 16 24 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 25 H 0.39 15.32 5.76 -92.71 -0.53 14.79 16 26 H 0.12 3.00 8.08 -2.39 -0.02 2.98 16 27 H 0.07 1.94 5.91 -2.39 -0.01 1.93 16 28 H 0.09 1.51 8.05 -2.39 -0.02 1.49 16 29 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.09 1.32 7.06 -2.39 -0.02 1.30 16 32 H 0.15 2.26 8.06 -2.91 -0.02 2.23 16 33 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 34 H 0.13 3.20 8.06 -2.91 -0.02 3.18 16 35 H 0.07 2.83 5.85 -2.39 -0.01 2.81 16 36 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 Total: -1.00 -73.94 314.18 0.18 -73.75 By element: Atomic # 1 Polarization: 29.80 SS G_CDS: 0.52 Total: 30.33 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: 4.04 Total: -5.45 kcal Atomic # 7 Polarization: -99.49 SS G_CDS: -5.56 Total: -105.05 kcal Atomic # 8 Polarization: -32.86 SS G_CDS: -0.04 Total: -32.91 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 1.90 Total: 40.90 kcal Atomic # 35 Polarization: -0.88 SS G_CDS: -0.69 Total: -1.57 kcal Total: -73.94 0.18 -73.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192248305.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.285 kcal (2) G-P(sol) polarization free energy of solvation -73.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds