Wall clock time and date at job start Tue Mar 31 2020 20:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 5 5 H 1.07999 * 120.00019 * 120.00027 * 4 2 1 6 6 C 1.37879 * 119.99908 * 300.00133 * 4 2 1 7 7 N 1.31510 * 120.00364 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99946 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47324 * 59.99539 * 8 6 4 10 10 H 1.48494 * 109.47376 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46921 * 299.99915 * 8 6 4 12 12 N 1.46496 * 109.46995 * 239.99855 * 2 1 3 13 13 C 1.46500 * 119.99935 * 299.99945 * 12 2 1 14 14 S 1.65603 * 120.00062 * 120.00453 * 12 2 1 15 15 O 1.42096 * 106.40136 * 203.53682 * 14 12 2 16 16 O 1.42104 * 106.39896 * 336.45754 * 14 12 2 17 17 C 1.76202 * 107.21995 * 89.99479 * 14 12 2 18 18 C 1.38757 * 120.43019 * 90.00070 * 17 14 12 19 19 Cl 1.73609 * 120.79527 * 0.02562 * 18 17 14 20 20 C 1.38818 * 118.41138 * 180.02562 * 18 17 14 21 21 C 1.38136 * 119.17146 * 359.97438 * 20 18 17 22 22 N 1.31899 * 120.79363 * 0.02562 * 21 20 18 23 23 C 1.32004 * 121.74142 * 359.70123 * 22 21 20 24 24 Cl 1.73605 * 119.62895 * 180.29255 * 23 22 21 25 25 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 26 26 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 28 28 H 0.96999 * 120.00396 * 180.02562 * 7 6 4 29 29 H 1.08998 * 109.46877 * 90.00284 * 13 12 2 30 30 H 1.09004 * 109.46845 * 210.00304 * 13 12 2 31 31 H 1.08994 * 109.47249 * 330.00535 * 13 12 2 32 32 H 1.07992 * 120.41726 * 180.02562 * 20 18 17 33 33 H 1.08000 * 119.60151 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.8074 -1.1190 4.0079 10 1 1.8277 -0.4192 5.2205 11 1 1.8279 -2.5197 4.0082 12 7 2.0184 -0.6906 -1.1961 13 6 1.6644 -2.0932 -1.4279 14 16 2.9705 0.1141 -2.2862 15 8 2.8229 -0.5647 -3.5258 16 8 2.6905 1.4972 -2.1192 17 6 4.6446 -0.1183 -1.7879 18 6 5.3757 -1.1979 -2.2625 19 17 4.6625 -2.3427 -3.3556 20 6 6.6910 -1.3408 -1.8422 21 6 7.2248 -0.4100 -0.9723 22 7 6.5005 0.6046 -0.5412 23 6 5.2486 0.7759 -0.9230 24 17 4.3479 2.1352 -0.3273 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.7094 1.1619 3.4844 29 1 0.7376 -2.1444 -1.9992 30 1 2.4629 -2.5819 -1.9862 31 1 1.5294 -2.5968 -0.4707 32 1 7.2897 -2.1689 -2.1916 33 1 8.2475 -0.5142 -0.6412 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270991644.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:07 Heat of formation + Delta-G solvation = -21.232212 kcal Electronic energy + Delta-G solvation = -24021.034968 eV Core-core repulsion = 20262.160299 eV Total energy + Delta-G solvation = -3758.874670 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.33803 -37.24550 -36.65611 -36.34977 -36.21335 -35.33772 -32.63979 -32.55012 -31.44010 -29.12364 -25.59903 -25.20325 -24.38390 -23.86663 -20.81260 -18.94145 -17.87602 -17.36273 -17.08189 -16.78560 -16.38581 -15.24328 -14.87958 -14.77527 -14.52281 -14.28363 -13.57031 -13.38523 -13.07923 -12.77901 -12.65584 -12.24199 -12.03231 -11.77002 -11.71435 -11.43905 -11.41366 -11.20234 -10.98195 -10.88783 -10.70825 -10.47481 -10.37986 -10.24199 -10.15550 -9.88679 -9.74236 -9.35106 -9.18075 -8.48720 -8.03913 -6.11252 -4.19578 0.26693 0.68957 0.85681 1.52529 1.95622 3.14233 3.24256 3.30155 3.31279 3.52292 4.14632 4.17327 4.29957 4.34292 4.71167 4.82610 4.99915 5.19868 5.27669 5.41453 5.57210 5.98260 6.12546 6.27411 6.61522 6.83803 6.86234 7.08131 7.37494 7.39243 7.58866 7.75711 8.01199 8.22230 8.81827 9.46764 10.93789 Molecular weight = 338.00amu Principal moments of inertia in cm(-1) A = 0.012427 B = 0.006596 C = 0.005944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.625572 B = 4243.925340 C = 4709.152440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.262 3.738 3 H 0.068 0.932 4 C -0.528 4.528 5 H 0.060 0.940 6 C 0.070 3.930 7 N -0.883 5.883 8 Si 0.891 3.109 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.969 5.969 13 C 0.101 3.899 14 S 2.675 3.325 15 O -0.954 6.954 16 O -0.937 6.937 17 C -0.716 4.716 18 C 0.101 3.899 19 Cl -0.004 7.004 20 C -0.194 4.194 21 C 0.176 3.824 22 N -0.489 5.489 23 C 0.282 3.718 24 Cl 0.046 6.954 25 H 0.014 0.986 26 H 0.033 0.967 27 H 0.094 0.906 28 H 0.265 0.735 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.082 0.918 32 H 0.157 0.843 33 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.543 -4.819 -8.299 13.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.160 3.840 3 H 0.085 0.915 4 C -0.568 4.568 5 H 0.078 0.922 6 C -0.133 4.133 7 N -0.521 5.521 8 Si 0.718 3.282 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.810 5.810 13 C -0.046 4.046 14 S 2.758 3.242 15 O -0.944 6.944 16 O -0.927 6.927 17 C -0.800 4.800 18 C 0.065 3.935 19 Cl 0.026 6.974 20 C -0.215 4.215 21 C 0.018 3.982 22 N -0.201 5.201 23 C 0.116 3.884 24 Cl 0.076 6.924 25 H 0.033 0.967 26 H 0.053 0.947 27 H 0.113 0.887 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.175 0.825 33 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 9.457 -3.604 -8.328 13.107 hybrid contribution 0.592 -1.456 0.905 1.814 sum 10.049 -5.060 -7.423 13.479 Atomic orbital electron populations 1.22057 0.97522 0.99839 1.00942 1.18932 0.92086 0.93215 0.79767 0.91459 1.21279 1.32162 1.13150 0.90196 0.92212 1.24845 0.94823 0.94890 0.98758 1.69846 1.35953 1.22365 1.23956 0.86679 0.79258 0.79803 0.82430 1.20310 1.21085 1.20204 1.57488 1.61452 1.21825 1.40268 1.21348 0.99402 0.81563 1.02241 1.02830 0.72819 0.74546 0.73984 1.93605 1.85152 1.75275 1.40336 1.93662 1.82672 1.30311 1.86061 1.31999 1.30598 1.03799 1.13561 1.20791 0.93251 0.89366 0.90066 1.98478 1.82312 1.56971 1.59646 1.22190 0.94513 1.03050 1.01782 1.23023 0.99291 0.86713 0.89163 1.67336 1.05828 1.22662 1.24307 1.21408 0.89752 0.89341 0.87874 1.98562 1.68607 1.39435 1.85810 0.96675 0.94749 0.88725 0.92513 0.93175 0.92998 0.89902 0.82494 0.80420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 8.97 37.16 0.33 -2.99 16 2 C 0.26 6.21 2.62 -69.08 -0.18 6.03 16 3 H 0.07 1.72 5.87 -51.93 -0.30 1.42 16 4 C -0.53 -13.28 7.99 -34.44 -0.28 -13.55 16 5 H 0.06 1.48 7.33 -52.49 -0.38 1.09 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 7 N -0.88 -23.68 11.32 55.43 0.63 -23.06 16 8 Si 0.89 20.33 29.54 -169.99 -5.02 15.31 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 N -0.97 -19.89 3.06 -115.85 -0.35 -20.25 16 13 C 0.10 1.76 9.28 59.85 0.56 2.32 16 14 S 2.67 52.99 5.33 -107.50 -0.57 52.41 16 15 O -0.95 -18.47 13.99 -57.17 -0.80 -19.27 16 16 O -0.94 -20.41 13.35 -57.17 -0.76 -21.17 16 17 C -0.72 -12.94 6.00 -39.37 -0.24 -13.18 16 18 C 0.10 1.53 6.35 -39.17 -0.25 1.28 16 19 Cl 0.00 -0.05 24.31 -51.86 -1.26 -1.31 16 20 C -0.19 -2.27 9.93 -39.40 -0.39 -2.66 16 21 C 0.18 2.11 11.18 -17.56 -0.20 1.91 16 22 N -0.49 -8.01 10.34 -10.38 -0.11 -8.12 16 23 C 0.28 5.25 7.26 -17.46 -0.13 5.13 16 24 Cl 0.05 0.94 24.72 -51.86 -1.28 -0.34 16 25 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.03 0.74 7.67 -51.93 -0.40 0.34 16 27 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 28 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.81 6.20 -51.93 -0.32 0.49 16 31 H 0.08 1.47 7.02 -51.93 -0.36 1.10 16 32 H 0.16 1.21 8.06 -52.49 -0.42 0.78 16 33 H 0.18 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 313.05 15.07 4.72 4.72 Total: -1.00 -29.44 313.05 -8.59 -38.04 By element: Atomic # 1 Polarization: -0.06 SS G_CDS: -2.92 Total: -2.98 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -0.86 Total: -13.98 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: 0.17 Total: -51.42 kcal Atomic # 8 Polarization: -38.88 SS G_CDS: -1.56 Total: -40.45 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 16 Polarization: 52.99 SS G_CDS: -0.57 Total: 52.41 kcal Atomic # 17 Polarization: 0.89 SS G_CDS: -2.54 Total: -1.66 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.44 -8.59 -38.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270991644.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.805 kcal (2) G-P(sol) polarization free energy of solvation -29.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds