Wall clock time and date at job start Tue Mar 31 2020 20:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46492 * 109.46931 * 2 1 4 4 C 1.46507 * 120.00268 * 274.99968 * 3 2 1 5 5 C 1.50702 * 109.46815 * 275.00348 * 4 3 2 6 6 H 1.07994 * 120.00277 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99501 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99825 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00136 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47397 * 90.00099 * 9 7 5 11 11 H 1.48502 * 109.46958 * 210.00065 * 9 7 5 12 12 H 1.48503 * 109.47000 * 329.99817 * 9 7 5 13 13 S 1.65602 * 120.00227 * 94.99957 * 3 2 1 14 14 O 1.42097 * 106.40245 * 156.45768 * 13 3 2 15 15 O 1.42104 * 106.40112 * 23.54388 * 13 3 2 16 16 C 1.76198 * 107.22136 * 269.99846 * 13 3 2 17 17 C 1.38765 * 120.43000 * 89.99592 * 16 13 3 18 18 Cl 1.73603 * 120.79601 * 359.75068 * 17 16 13 19 19 C 1.38816 * 118.40626 * 179.72845 * 17 16 13 20 20 C 1.38127 * 119.17411 * 0.02562 * 19 17 16 21 21 N 1.31898 * 120.79725 * 0.02562 * 20 19 17 22 22 C 1.31997 * 121.73850 * 0.02562 * 21 20 19 23 23 Cl 1.73605 * 119.62368 * 179.97438 * 22 21 20 24 24 H 1.08994 * 109.47449 * 59.99972 * 1 2 3 25 25 H 1.09005 * 109.46942 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47142 * 299.99752 * 1 2 3 27 27 H 1.08997 * 109.47098 * 239.99466 * 2 1 3 28 28 H 1.08999 * 109.47004 * 120.00104 * 2 1 3 29 29 H 1.09001 * 109.46819 * 34.99936 * 4 3 2 30 30 H 1.08998 * 109.47366 * 155.00079 * 4 3 2 31 31 H 0.96991 * 119.99586 * 180.02562 * 8 7 5 32 32 H 1.07999 * 120.40596 * 180.02562 * 19 17 16 33 33 H 1.08001 * 119.59918 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4948 1.7888 -1.8823 6 1 4.1723 1.1117 -1.3836 7 6 3.8525 2.3606 -3.0849 8 7 5.0191 2.0819 -3.6244 9 14 2.6808 3.5324 -3.9471 10 1 2.9452 4.9209 -3.4920 11 1 2.8852 3.4453 -5.4154 12 1 1.2804 3.1622 -3.6195 13 16 2.4121 2.1202 1.4287 14 8 3.3283 3.1570 1.1049 15 8 2.7096 1.0799 2.3499 16 6 0.9555 2.9119 2.0254 17 6 0.0782 2.2333 2.8593 18 17 0.3889 0.5912 3.3291 19 6 -1.0537 2.8993 3.3093 20 6 -1.2679 4.2055 2.9146 21 7 -0.4130 4.8196 2.1198 22 6 0.6732 4.2185 1.6712 23 17 1.7610 5.0788 0.6270 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.3617 1.8097 -1.9453 30 1 2.0921 3.1803 -1.0756 31 1 5.2708 2.4844 -4.4701 32 1 -1.7579 2.4021 3.9599 33 1 -2.1464 4.7300 3.2603 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271015153.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:52 Heat of formation + Delta-G solvation = -18.960532 kcal Electronic energy + Delta-G solvation = -23905.150479 eV Core-core repulsion = 20146.374316 eV Total energy + Delta-G solvation = -3758.776163 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.57388 -37.39788 -36.79923 -36.55622 -36.27263 -35.32846 -32.77915 -32.60180 -31.65995 -30.34007 -27.20863 -24.61881 -24.08589 -22.96950 -21.63575 -19.02845 -18.04264 -17.56168 -17.29674 -17.02896 -16.58229 -15.53398 -15.07796 -15.04647 -14.49227 -14.26475 -14.07566 -13.69882 -13.35111 -12.90086 -12.82028 -12.49919 -12.30033 -12.15114 -11.91052 -11.84505 -11.62754 -11.50925 -11.15952 -10.97796 -10.87174 -10.56305 -10.47376 -10.42243 -10.27579 -10.06287 -9.94646 -9.55600 -9.49240 -8.59531 -8.22274 -6.09214 -4.08201 0.04286 0.45687 0.72390 1.33470 1.71283 2.91952 3.25534 3.31036 3.33380 3.44684 3.98171 4.03973 4.14905 4.37283 4.49466 4.60947 4.83263 5.09017 5.17458 5.26596 5.29443 5.56593 5.60522 5.76653 5.81680 6.14658 6.41029 6.47078 6.70924 7.01788 7.13366 7.29130 7.55345 8.47240 8.96034 9.49839 11.04182 Molecular weight = 338.00amu Principal moments of inertia in cm(-1) A = 0.014811 B = 0.006288 C = 0.005270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.076683 B = 4451.785621 C = 5311.635572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.114 3.886 3 N -0.965 5.965 4 C 0.222 3.778 5 C -0.528 4.528 6 H 0.081 0.919 7 C 0.077 3.923 8 N -0.893 5.893 9 Si 0.861 3.139 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.263 1.263 13 S 2.675 3.325 14 O -0.915 6.915 15 O -0.948 6.948 16 C -0.722 4.722 17 C 0.101 3.899 18 Cl 0.004 6.996 19 C -0.190 4.190 20 C 0.175 3.825 21 N -0.488 5.488 22 C 0.270 3.730 23 Cl 0.042 6.958 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.043 0.957 27 H 0.095 0.905 28 H 0.083 0.917 29 H 0.035 0.965 30 H 0.033 0.967 31 H 0.265 0.735 32 H 0.160 0.840 33 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.629 0.179 13.390 20.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.012 4.012 3 N -0.805 5.805 4 C 0.099 3.901 5 C -0.567 4.567 6 H 0.099 0.901 7 C -0.126 4.126 8 N -0.531 5.531 9 Si 0.687 3.313 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.188 1.188 13 S 2.756 3.244 14 O -0.905 6.905 15 O -0.938 6.938 16 C -0.804 4.804 17 C 0.065 3.935 18 Cl 0.034 6.966 19 C -0.212 4.212 20 C 0.018 3.982 21 N -0.201 5.201 22 C 0.104 3.896 23 Cl 0.071 6.929 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.062 0.938 27 H 0.113 0.887 28 H 0.101 0.899 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.177 0.823 33 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -14.793 1.047 13.344 19.950 hybrid contribution -1.160 0.077 -0.375 1.222 sum -15.953 1.124 12.969 20.590 Atomic orbital electron populations 1.22332 0.97379 1.01961 1.01791 1.21287 0.92922 0.82444 1.04520 1.57236 1.80894 1.21142 1.21218 1.19615 0.98635 0.91341 0.80534 1.21306 1.00605 1.29000 1.05801 0.90100 1.24804 0.94942 0.95953 0.96889 1.69880 1.20402 1.43918 1.18903 0.87085 0.82140 0.82559 0.79515 1.19634 1.20782 1.18784 1.03022 0.73775 0.74194 0.73432 1.93714 1.56839 1.57092 1.82862 1.93600 1.82144 1.55397 1.62629 1.32241 1.27326 1.06248 1.14625 1.20839 0.92821 0.88309 0.91532 1.98496 1.94662 1.13921 1.89544 1.22251 0.98148 0.96823 1.03950 1.23053 0.95829 0.90711 0.88648 1.67343 1.02815 1.38110 1.11802 1.21448 0.90221 0.87765 0.90163 1.98574 1.56712 1.76946 1.60669 0.92001 0.91575 0.93815 0.88683 0.89857 0.94674 0.94890 0.92488 0.82277 0.80242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.34 10.24 37.16 0.38 -1.96 16 2 C 0.11 1.87 6.40 -4.04 -0.03 1.85 16 3 N -0.96 -19.15 2.77 -115.66 -0.32 -19.47 16 4 C 0.22 5.08 4.17 -5.19 -0.02 5.06 16 5 C -0.53 -14.58 9.94 -34.44 -0.34 -14.92 16 6 H 0.08 2.44 8.06 -52.49 -0.42 2.01 16 7 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 8 N -0.89 -26.99 13.96 55.43 0.77 -26.21 16 9 Si 0.86 20.80 27.47 -169.99 -4.67 16.14 16 10 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.26 -5.90 6.54 56.52 0.37 -5.53 16 13 S 2.67 52.39 5.33 -107.50 -0.57 51.82 16 14 O -0.92 -20.68 13.76 -57.17 -0.79 -21.47 16 15 O -0.95 -18.42 13.48 -57.17 -0.77 -19.19 16 16 C -0.72 -11.76 6.00 -39.37 -0.24 -12.00 16 17 C 0.10 1.34 5.58 -39.17 -0.22 1.12 16 18 Cl 0.00 0.05 24.32 -51.86 -1.26 -1.21 16 19 C -0.19 -1.83 9.93 -39.41 -0.39 -2.22 16 20 C 0.17 1.70 11.18 -17.56 -0.20 1.50 16 21 N -0.49 -6.80 10.34 -10.38 -0.11 -6.90 16 22 C 0.27 4.42 7.26 -17.46 -0.13 4.30 16 23 Cl 0.04 0.77 24.11 -51.86 -1.25 -0.48 16 24 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.04 0.55 5.64 -51.93 -0.29 0.26 16 27 H 0.09 1.59 8.11 -51.93 -0.42 1.17 16 28 H 0.08 1.29 6.91 -51.93 -0.36 0.94 16 29 H 0.04 0.77 7.17 -51.93 -0.37 0.40 16 30 H 0.03 0.76 5.32 -51.93 -0.28 0.49 16 31 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.16 0.92 8.06 -52.49 -0.42 0.49 16 33 H 0.18 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 314.35 15.07 4.74 4.74 Total: -1.00 -32.77 314.35 -8.51 -41.27 By element: Atomic # 1 Polarization: -0.85 SS G_CDS: -3.00 Total: -3.86 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -1.28 Total: -15.17 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: 0.35 Total: -52.59 kcal Atomic # 8 Polarization: -39.10 SS G_CDS: -1.56 Total: -40.66 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.67 Total: 16.14 kcal Atomic # 16 Polarization: 52.39 SS G_CDS: -0.57 Total: 51.82 kcal Atomic # 17 Polarization: 0.82 SS G_CDS: -2.51 Total: -1.69 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.77 -8.51 -41.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271015153.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.312 kcal (2) G-P(sol) polarization free energy of solvation -32.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds