Wall clock time and date at job start Tue Mar 31 2020 20:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46492 * 109.46931 * 2 1 4 4 C 1.46507 * 120.00268 * 274.99968 * 3 2 1 5 5 C 1.50702 * 109.46815 * 275.00348 * 4 3 2 6 6 H 1.07994 * 120.00277 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99501 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99825 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00136 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47397 * 90.00099 * 9 7 5 11 11 H 1.48502 * 109.46958 * 210.00065 * 9 7 5 12 12 H 1.48503 * 109.47000 * 329.99817 * 9 7 5 13 13 S 1.65602 * 120.00227 * 94.99957 * 3 2 1 14 14 O 1.42097 * 106.40245 * 156.45768 * 13 3 2 15 15 O 1.42104 * 106.40112 * 23.54388 * 13 3 2 16 16 C 1.76198 * 107.22136 * 269.99846 * 13 3 2 17 17 C 1.38765 * 120.43000 * 89.99592 * 16 13 3 18 18 Cl 1.73603 * 120.79601 * 359.75068 * 17 16 13 19 19 C 1.38816 * 118.40626 * 179.72845 * 17 16 13 20 20 C 1.38127 * 119.17411 * 0.02562 * 19 17 16 21 21 N 1.31898 * 120.79725 * 0.02562 * 20 19 17 22 22 C 1.31997 * 121.73850 * 0.02562 * 21 20 19 23 23 Cl 1.73605 * 119.62368 * 179.97438 * 22 21 20 24 24 H 1.08994 * 109.47449 * 59.99972 * 1 2 3 25 25 H 1.09005 * 109.46942 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47142 * 299.99752 * 1 2 3 27 27 H 1.08997 * 109.47098 * 239.99466 * 2 1 3 28 28 H 1.08999 * 109.47004 * 120.00104 * 2 1 3 29 29 H 1.09001 * 109.46819 * 34.99936 * 4 3 2 30 30 H 1.08998 * 109.47366 * 155.00079 * 4 3 2 31 31 H 0.96991 * 119.99586 * 180.02562 * 8 7 5 32 32 H 1.07999 * 120.40596 * 180.02562 * 19 17 16 33 33 H 1.08001 * 119.59918 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4948 1.7888 -1.8823 6 1 4.1723 1.1117 -1.3836 7 6 3.8525 2.3606 -3.0849 8 7 5.0191 2.0819 -3.6244 9 14 2.6808 3.5324 -3.9471 10 1 2.9452 4.9209 -3.4920 11 1 2.8852 3.4453 -5.4154 12 1 1.2804 3.1622 -3.6195 13 16 2.4121 2.1202 1.4287 14 8 3.3283 3.1570 1.1049 15 8 2.7096 1.0799 2.3499 16 6 0.9555 2.9119 2.0254 17 6 0.0782 2.2333 2.8593 18 17 0.3889 0.5912 3.3291 19 6 -1.0537 2.8993 3.3093 20 6 -1.2679 4.2055 2.9146 21 7 -0.4130 4.8196 2.1198 22 6 0.6732 4.2185 1.6712 23 17 1.7610 5.0788 0.6270 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.3617 1.8097 -1.9453 30 1 2.0921 3.1803 -1.0756 31 1 5.2708 2.4844 -4.4701 32 1 -1.7579 2.4021 3.9599 33 1 -2.1464 4.7300 3.2603 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271015153.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:51 Heat of formation + Delta-G solvation = -43.097138 kcal Electronic energy + Delta-G solvation = -23906.197121 eV Core-core repulsion = 20146.374316 eV Total energy + Delta-G solvation = -3759.822804 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.57223 -38.67095 -37.95465 -37.93378 -37.78799 -36.90581 -34.68040 -33.79046 -32.64168 -31.86013 -28.99077 -25.62785 -25.10781 -24.62026 -23.21839 -20.34167 -19.40311 -18.99280 -18.68302 -18.53919 -18.04776 -17.09866 -16.24537 -16.09543 -16.00258 -15.64227 -15.41673 -14.94038 -14.60062 -14.43351 -14.18746 -14.01869 -13.82351 -13.56382 -13.33743 -13.13370 -13.10191 -12.91010 -12.73929 -12.54782 -12.19022 -12.09056 -12.01135 -11.78717 -11.72025 -11.64614 -11.21373 -11.04543 -10.76856 -10.47773 -9.84820 -8.27788 -6.31640 -1.03036 -0.70696 -0.51485 0.25061 0.64293 1.33845 1.37124 1.44339 1.83320 2.12401 2.33923 2.65417 2.85768 3.06357 3.21417 3.50360 3.69590 3.72791 3.89544 4.06905 4.38087 4.40173 4.47032 4.61994 4.82674 4.98896 5.00720 5.01670 5.33469 5.38832 5.48668 5.73507 6.18764 6.31492 6.71105 7.30228 8.89537 Molecular weight = 338.00amu Principal moments of inertia in cm(-1) A = 0.014811 B = 0.006288 C = 0.005270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.076683 B = 4451.785621 C = 5311.635572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.105 3.895 3 N -0.975 5.975 4 C 0.231 3.769 5 C -0.532 4.532 6 H 0.036 0.964 7 C 0.016 3.984 8 N -0.944 5.944 9 Si 0.920 3.080 10 H -0.269 1.269 11 H -0.276 1.276 12 H -0.230 1.230 13 S 2.677 3.323 14 O -0.959 6.959 15 O -0.958 6.958 16 C -0.732 4.732 17 C 0.087 3.913 18 Cl 0.004 6.996 19 C -0.161 4.161 20 C 0.189 3.811 21 N -0.501 5.501 22 C 0.257 3.743 23 Cl 0.005 6.995 24 H 0.059 0.941 25 H 0.094 0.906 26 H 0.052 0.948 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.053 0.947 30 H 0.036 0.964 31 H 0.267 0.733 32 H 0.210 0.790 33 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.330 0.648 15.008 25.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.020 4.020 3 N -0.814 5.814 4 C 0.107 3.893 5 C -0.572 4.572 6 H 0.054 0.946 7 C -0.182 4.182 8 N -0.585 5.585 9 Si 0.742 3.258 10 H -0.195 1.195 11 H -0.201 1.201 12 H -0.153 1.153 13 S 2.764 3.236 14 O -0.949 6.949 15 O -0.948 6.948 16 C -0.820 4.820 17 C 0.051 3.949 18 Cl 0.033 6.967 19 C -0.182 4.182 20 C 0.033 3.967 21 N -0.213 5.213 22 C 0.091 3.909 23 Cl 0.034 6.966 24 H 0.078 0.922 25 H 0.113 0.887 26 H 0.071 0.929 27 H 0.101 0.899 28 H 0.106 0.894 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.227 0.773 33 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -19.471 1.460 14.965 24.601 hybrid contribution 0.204 -0.132 -0.649 0.693 sum -19.267 1.328 14.316 24.040 Atomic orbital electron populations 1.22273 0.94351 1.03936 1.02091 1.21512 0.95472 0.80789 1.04214 1.57160 1.81614 1.22433 1.20233 1.19335 0.96180 0.91884 0.81942 1.21594 1.02111 1.27703 1.05745 0.94590 1.25729 0.96733 0.97908 0.97853 1.70042 1.22844 1.45877 1.19722 0.86114 0.81480 0.79830 0.78328 1.19472 1.20088 1.15255 1.02413 0.74330 0.73659 0.73234 1.93665 1.59654 1.58146 1.83450 1.93579 1.83045 1.55726 1.62437 1.31513 1.26917 1.06528 1.17091 1.21088 0.93635 0.88511 0.91650 1.98500 1.94812 1.13951 1.89399 1.22859 0.96693 0.96376 1.02239 1.24105 0.95790 0.90836 0.85984 1.67388 1.02531 1.38597 1.12814 1.21287 0.91022 0.87613 0.90931 1.98555 1.58358 1.77534 1.62112 0.92209 0.88734 0.92936 0.89854 0.89412 0.92897 0.94589 0.92385 0.77349 0.74642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.07 10.24 71.98 0.74 -3.34 16 2 C 0.10 3.43 6.40 86.38 0.55 3.98 16 3 N -0.98 -39.17 2.77 -519.85 -1.44 -40.61 16 4 C 0.23 10.68 4.17 85.63 0.36 11.04 16 5 C -0.53 -30.65 9.94 25.60 0.25 -30.39 16 6 H 0.04 2.32 8.06 -2.91 -0.02 2.30 16 7 C 0.02 0.93 5.47 84.66 0.46 1.40 16 8 N -0.94 -59.59 13.96 21.45 0.30 -59.29 16 9 Si 0.92 42.98 27.47 68.60 1.88 44.86 16 10 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 12 H -0.23 -9.41 6.54 99.48 0.65 -8.76 16 13 S 2.68 106.65 5.33 -56.49 -0.30 106.35 16 14 O -0.96 -45.40 13.76 -128.00 -1.76 -47.16 16 15 O -0.96 -37.77 13.48 -128.00 -1.73 -39.49 16 16 C -0.73 -22.80 6.00 22.41 0.13 -22.67 16 17 C 0.09 2.02 5.58 22.53 0.13 2.15 16 18 Cl 0.00 0.08 24.32 -2.72 -0.07 0.02 16 19 C -0.16 -2.16 9.93 22.38 0.22 -1.94 16 20 C 0.19 2.57 11.18 84.66 0.95 3.52 16 21 N -0.50 -12.23 10.34 -186.76 -1.93 -14.16 16 22 C 0.26 8.05 7.26 84.68 0.61 8.66 16 23 Cl 0.01 0.20 24.11 -2.72 -0.07 0.13 16 24 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 26 H 0.05 1.17 5.64 -2.39 -0.01 1.16 16 27 H 0.08 2.86 8.11 -2.39 -0.02 2.84 16 28 H 0.09 2.74 6.91 -2.39 -0.02 2.72 16 29 H 0.05 2.25 7.17 -2.39 -0.02 2.24 16 30 H 0.04 1.67 5.32 -2.39 -0.01 1.66 16 31 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 32 H 0.21 0.77 8.06 -2.91 -0.02 0.75 16 33 H 0.24 0.51 8.06 -2.91 -0.02 0.48 16 Total: -1.00 -77.39 314.35 0.41 -76.99 By element: Atomic # 1 Polarization: -1.15 SS G_CDS: 1.11 Total: -0.05 kcal Atomic # 6 Polarization: -31.99 SS G_CDS: 4.41 Total: -27.59 kcal Atomic # 7 Polarization: -110.98 SS G_CDS: -3.07 Total: -114.05 kcal Atomic # 8 Polarization: -83.17 SS G_CDS: -3.49 Total: -86.65 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 1.88 Total: 44.86 kcal Atomic # 16 Polarization: 106.65 SS G_CDS: -0.30 Total: 106.35 kcal Atomic # 17 Polarization: 0.28 SS G_CDS: -0.13 Total: 0.15 kcal Total: -77.39 0.41 -76.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271015153.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.889 kcal (2) G-P(sol) polarization free energy of solvation -77.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds