Wall clock time and date at job start Tue Mar 31 2020 20:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47603 * 2 1 4 4 H 1.08992 * 109.47533 * 181.43069 * 3 2 1 5 5 C 1.50704 * 109.46576 * 301.43116 * 3 2 1 6 6 H 1.08009 * 119.99922 * 114.81032 * 5 3 2 7 7 C 1.37873 * 120.00262 * 294.79950 * 5 3 2 8 8 N 1.31518 * 119.99927 * 354.34015 * 7 5 3 9 9 Si 1.86799 * 120.00286 * 174.33392 * 7 5 3 10 10 H 1.48497 * 109.47040 * 270.00564 * 9 7 5 11 11 H 1.48502 * 109.47008 * 30.00265 * 9 7 5 12 12 H 1.48497 * 109.47339 * 150.00325 * 9 7 5 13 13 N 1.46503 * 109.47030 * 61.42482 * 3 2 1 14 14 S 1.65599 * 119.99480 * 94.91361 * 13 3 2 15 15 O 1.42102 * 106.40206 * 178.60355 * 14 13 3 16 16 O 1.42101 * 106.40401 * 311.52286 * 14 13 3 17 17 C 1.76205 * 107.21928 * 65.06101 * 14 13 3 18 18 C 1.38759 * 120.43001 * 90.00024 * 17 14 13 19 19 Cl 1.73595 * 120.79666 * 0.02562 * 18 17 14 20 20 C 1.38813 * 118.40336 * 179.97438 * 18 17 14 21 21 C 1.38135 * 119.18044 * 0.02562 * 20 18 17 22 22 N 1.31897 * 120.79325 * 359.97438 * 21 20 18 23 23 C 1.32011 * 121.73847 * 359.70496 * 22 21 20 24 24 Cl 1.73600 * 119.62787 * 180.29159 * 23 22 21 25 25 H 1.09002 * 109.47001 * 305.12124 * 1 2 3 26 26 H 1.09002 * 109.46632 * 65.11543 * 1 2 3 27 27 H 1.08997 * 109.47649 * 185.11531 * 1 2 3 28 28 H 1.09000 * 109.47153 * 239.99415 * 2 1 3 29 29 H 1.09001 * 109.46592 * 119.99932 * 2 1 3 30 30 H 0.96999 * 119.99558 * 355.40015 * 8 7 5 31 31 H 0.96991 * 120.00351 * 274.91181 * 13 3 2 32 32 H 1.08002 * 120.40711 * 180.02562 * 20 18 17 33 33 H 1.07992 * 119.60409 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1297 1.4425 -0.0257 5 6 1.5090 2.1630 -1.2124 6 1 0.8233 2.9888 -1.0925 7 6 1.8985 1.7681 -2.4747 8 7 2.8170 0.8379 -2.6185 9 14 1.1214 2.5541 -3.9806 10 1 -0.0806 1.7786 -4.3791 11 1 0.7269 3.9499 -3.6624 12 1 2.1002 2.5586 -5.0973 13 7 1.5801 2.1231 1.2130 14 16 2.5602 2.1920 2.5460 15 8 1.8510 2.9355 3.5275 16 8 3.0341 0.8702 2.7644 17 6 3.9671 3.1590 2.1095 18 6 3.9619 4.5334 2.3007 19 17 2.5749 5.3320 2.9729 20 6 5.0930 5.2541 1.9426 21 6 6.1780 4.5845 1.4112 22 7 6.1482 3.2766 1.2432 23 6 5.0930 2.5573 1.5777 24 17 5.1159 0.8379 1.3398 25 1 -0.3633 0.5912 0.8406 26 1 -0.3633 0.4325 -0.9323 27 1 -0.3634 -1.0235 0.0916 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 3.2681 0.4772 -1.8392 31 1 0.7015 2.5333 1.2353 32 1 5.1242 6.3252 2.0778 33 1 7.0616 5.1383 1.1306 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273920887.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:06 Heat of formation + Delta-G solvation = -37.071198 kcal Electronic energy + Delta-G solvation = -23865.448678 eV Core-core repulsion = 20105.887178 eV Total energy + Delta-G solvation = -3759.561500 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.42147 -37.34013 -36.78216 -36.52588 -36.26557 -35.47102 -32.62674 -32.31598 -31.53858 -30.47957 -25.93143 -24.49893 -23.98989 -23.74960 -20.21980 -19.34944 -18.12045 -17.78553 -17.28848 -17.09794 -16.73339 -15.08527 -14.96371 -14.79934 -14.34243 -14.02921 -13.74220 -13.53897 -13.29282 -13.04640 -12.73075 -12.66180 -12.19325 -11.90222 -11.71734 -11.63627 -11.35154 -11.15687 -10.88086 -10.80311 -10.57526 -10.51116 -10.28658 -10.19926 -10.01910 -9.92873 -9.83610 -9.37572 -9.03760 -8.46410 -8.32109 -6.47104 -4.22086 0.18227 0.62492 0.75427 1.44622 1.83511 3.07717 3.36214 3.37846 3.45303 3.54122 4.02933 4.09792 4.22101 4.42570 4.64420 4.75964 4.94803 5.20224 5.23638 5.36889 5.92101 6.01008 6.17919 6.32887 6.42194 6.81478 6.99377 7.18361 7.29380 7.29470 7.37557 7.61517 8.04477 8.31982 8.69400 9.46413 10.88740 Molecular weight = 338.00amu Principal moments of inertia in cm(-1) A = 0.011872 B = 0.006057 C = 0.005916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.935451 B = 4621.275998 C = 4731.602415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.138 4.138 3 C 0.262 3.738 4 H 0.037 0.963 5 C -0.602 4.602 6 H 0.059 0.941 7 C 0.028 3.972 8 N -0.903 5.903 9 Si 1.066 2.934 10 H -0.286 1.286 11 H -0.289 1.289 12 H -0.285 1.285 13 N -1.083 6.083 14 S 2.680 3.320 15 O -0.958 6.958 16 O -0.939 6.939 17 C -0.715 4.715 18 C 0.106 3.894 19 Cl 0.000 7.000 20 C -0.191 4.191 21 C 0.178 3.822 22 N -0.487 5.487 23 C 0.277 3.723 24 Cl 0.038 6.962 25 H 0.038 0.962 26 H 0.063 0.937 27 H 0.028 0.972 28 H 0.072 0.928 29 H 0.042 0.958 30 H 0.273 0.727 31 H 0.413 0.587 32 H 0.160 0.840 33 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.800 7.820 8.726 12.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.178 4.178 3 C 0.157 3.843 4 H 0.055 0.945 5 C -0.641 4.641 6 H 0.077 0.923 7 C -0.178 4.178 8 N -0.538 5.538 9 Si 0.894 3.106 10 H -0.212 1.212 11 H -0.215 1.215 12 H -0.210 1.210 13 N -0.845 5.845 14 S 2.762 3.238 15 O -0.947 6.947 16 O -0.929 6.929 17 C -0.800 4.800 18 C 0.070 3.930 19 Cl 0.029 6.971 20 C -0.212 4.212 21 C 0.021 3.979 22 N -0.199 5.199 23 C 0.111 3.889 24 Cl 0.068 6.932 25 H 0.057 0.943 26 H 0.082 0.918 27 H 0.047 0.953 28 H 0.091 0.909 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.248 0.752 32 H 0.177 0.823 33 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 4.470 6.819 7.548 11.111 hybrid contribution -0.601 1.150 1.441 1.939 sum 3.869 7.969 8.989 12.620 Atomic orbital electron populations 1.21508 0.96703 0.98560 1.01700 1.22007 0.96298 0.98772 1.00697 1.18798 0.94537 0.89142 0.81789 0.94521 1.22022 1.31565 1.19153 0.91372 0.92323 1.25689 0.95790 0.95654 1.00661 1.70761 1.22636 1.25813 1.34585 0.83581 0.76047 0.75465 0.75480 1.21229 1.21514 1.21042 1.55407 1.28079 1.70124 1.30924 1.02570 0.73232 0.74296 0.73668 1.93623 1.70784 1.72890 1.57437 1.93671 1.81120 1.33796 1.84334 1.31808 1.22036 1.07316 1.18833 1.20785 0.90548 0.90730 0.90921 1.98487 1.38211 1.78625 1.81746 1.22232 0.93311 1.02480 1.03185 1.23051 0.97229 0.88725 0.88884 1.67312 1.26911 1.08076 1.17571 1.21353 0.88467 0.90060 0.88999 1.98540 1.97590 1.03243 1.93861 0.94316 0.91807 0.95302 0.90910 0.93977 0.91507 0.75196 0.82283 0.80205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 9.47 37.16 0.35 -2.21 16 2 C -0.14 -3.07 5.59 -26.73 -0.15 -3.22 16 3 C 0.26 5.94 2.09 -69.08 -0.14 5.80 16 4 H 0.04 0.88 4.82 -51.93 -0.25 0.62 16 5 C -0.60 -14.96 7.45 -34.44 -0.26 -15.22 16 6 H 0.06 1.44 7.82 -52.48 -0.41 1.03 16 7 C 0.03 0.73 5.27 -17.82 -0.09 0.64 16 8 N -0.90 -24.96 12.89 55.43 0.71 -24.25 16 9 Si 1.07 23.55 29.91 -169.99 -5.08 18.47 16 10 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.29 -6.11 7.11 56.52 0.40 -5.70 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 13 N -1.08 -21.23 4.80 -5.88 -0.03 -21.26 16 14 S 2.68 50.19 5.34 -107.50 -0.57 49.62 16 15 O -0.96 -17.90 14.92 -57.17 -0.85 -18.75 16 16 O -0.94 -18.99 13.99 -57.17 -0.80 -19.79 16 17 C -0.72 -12.66 5.84 -39.37 -0.23 -12.89 16 18 C 0.11 1.62 6.35 -39.18 -0.25 1.37 16 19 Cl 0.00 -0.01 25.81 -51.86 -1.34 -1.34 16 20 C -0.19 -2.25 9.93 -39.41 -0.39 -2.64 16 21 C 0.18 2.14 11.18 -17.56 -0.20 1.94 16 22 N -0.49 -7.86 10.34 -10.38 -0.11 -7.97 16 23 C 0.28 5.03 6.95 -17.45 -0.12 4.91 16 24 Cl 0.04 0.73 23.82 -51.86 -1.24 -0.51 16 25 H 0.04 0.71 7.26 -51.93 -0.38 0.33 16 26 H 0.06 1.36 7.37 -51.93 -0.38 0.97 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.07 1.76 6.27 -51.93 -0.33 1.44 16 29 H 0.04 0.91 7.61 -51.93 -0.40 0.51 16 30 H 0.27 7.52 6.03 -40.82 -0.25 7.28 16 31 H 0.41 7.40 8.49 -34.47 -0.29 7.11 16 32 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.18 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 313.20 15.07 4.72 4.72 Total: -1.00 -30.11 313.20 -8.81 -38.92 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -2.74 Total: 3.68 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: -1.48 Total: -21.53 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: 0.58 Total: -53.47 kcal Atomic # 8 Polarization: -36.89 SS G_CDS: -1.65 Total: -38.54 kcal Atomic # 14 Polarization: 23.55 SS G_CDS: -5.08 Total: 18.47 kcal Atomic # 16 Polarization: 50.19 SS G_CDS: -0.57 Total: 49.62 kcal Atomic # 17 Polarization: 0.72 SS G_CDS: -2.57 Total: -1.85 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.11 -8.81 -38.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273920887.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.849 kcal (2) G-P(sol) polarization free energy of solvation -30.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds