Wall clock time and date at job start Tue Mar 31 2020 20:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47603 * 2 1 4 4 H 1.08992 * 109.47533 * 181.43069 * 3 2 1 5 5 C 1.50704 * 109.46576 * 301.43116 * 3 2 1 6 6 H 1.08009 * 119.99922 * 114.81032 * 5 3 2 7 7 C 1.37873 * 120.00262 * 294.79950 * 5 3 2 8 8 N 1.31518 * 119.99927 * 354.34015 * 7 5 3 9 9 Si 1.86799 * 120.00286 * 174.33392 * 7 5 3 10 10 H 1.48497 * 109.47040 * 270.00564 * 9 7 5 11 11 H 1.48502 * 109.47008 * 30.00265 * 9 7 5 12 12 H 1.48497 * 109.47339 * 150.00325 * 9 7 5 13 13 N 1.46503 * 109.47030 * 61.42482 * 3 2 1 14 14 S 1.65599 * 119.99480 * 94.91361 * 13 3 2 15 15 O 1.42102 * 106.40206 * 178.60355 * 14 13 3 16 16 O 1.42101 * 106.40401 * 311.52286 * 14 13 3 17 17 C 1.76205 * 107.21928 * 65.06101 * 14 13 3 18 18 C 1.38759 * 120.43001 * 90.00024 * 17 14 13 19 19 Cl 1.73595 * 120.79666 * 0.02562 * 18 17 14 20 20 C 1.38813 * 118.40336 * 179.97438 * 18 17 14 21 21 C 1.38135 * 119.18044 * 0.02562 * 20 18 17 22 22 N 1.31897 * 120.79325 * 359.97438 * 21 20 18 23 23 C 1.32011 * 121.73847 * 359.70496 * 22 21 20 24 24 Cl 1.73600 * 119.62787 * 180.29159 * 23 22 21 25 25 H 1.09002 * 109.47001 * 305.12124 * 1 2 3 26 26 H 1.09002 * 109.46632 * 65.11543 * 1 2 3 27 27 H 1.08997 * 109.47649 * 185.11531 * 1 2 3 28 28 H 1.09000 * 109.47153 * 239.99415 * 2 1 3 29 29 H 1.09001 * 109.46592 * 119.99932 * 2 1 3 30 30 H 0.96999 * 119.99558 * 355.40015 * 8 7 5 31 31 H 0.96991 * 120.00351 * 274.91181 * 13 3 2 32 32 H 1.08002 * 120.40711 * 180.02562 * 20 18 17 33 33 H 1.07992 * 119.60409 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1297 1.4425 -0.0257 5 6 1.5090 2.1630 -1.2124 6 1 0.8233 2.9888 -1.0925 7 6 1.8985 1.7681 -2.4747 8 7 2.8170 0.8379 -2.6185 9 14 1.1214 2.5541 -3.9806 10 1 -0.0806 1.7786 -4.3791 11 1 0.7269 3.9499 -3.6624 12 1 2.1002 2.5586 -5.0973 13 7 1.5801 2.1231 1.2130 14 16 2.5602 2.1920 2.5460 15 8 1.8510 2.9355 3.5275 16 8 3.0341 0.8702 2.7644 17 6 3.9671 3.1590 2.1095 18 6 3.9619 4.5334 2.3007 19 17 2.5749 5.3320 2.9729 20 6 5.0930 5.2541 1.9426 21 6 6.1780 4.5845 1.4112 22 7 6.1482 3.2766 1.2432 23 6 5.0930 2.5573 1.5777 24 17 5.1159 0.8379 1.3398 25 1 -0.3633 0.5912 0.8406 26 1 -0.3633 0.4325 -0.9323 27 1 -0.3634 -1.0235 0.0916 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 3.2681 0.4772 -1.8392 31 1 0.7015 2.5333 1.2353 32 1 5.1242 6.3252 2.0778 33 1 7.0616 5.1383 1.1306 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273920887.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:06 Heat of formation + Delta-G solvation = -58.097020 kcal Electronic energy + Delta-G solvation = -23866.360426 eV Core-core repulsion = 20105.887178 eV Total energy + Delta-G solvation = -3760.473248 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.56468 -38.74422 -38.15544 -37.88839 -37.86693 -36.98791 -34.17572 -33.79410 -32.66725 -32.17791 -27.77423 -25.70151 -25.57345 -25.11480 -21.97996 -20.77603 -19.52389 -19.35816 -18.63204 -18.51131 -18.11294 -16.65360 -16.08893 -16.02424 -15.74881 -15.48274 -15.45654 -15.19540 -14.88060 -14.47525 -14.31396 -13.93117 -13.59067 -13.31940 -13.22574 -13.18032 -12.84774 -12.81313 -12.61582 -12.20577 -12.07277 -12.03994 -11.92627 -11.83738 -11.68202 -11.25908 -11.07560 -10.81576 -10.49962 -10.38898 -10.08623 -8.50407 -6.24691 -1.01725 -0.67152 -0.50804 0.22649 0.62473 1.58721 1.64520 1.80642 1.85913 2.07775 2.58248 2.61672 2.86460 3.20369 3.26423 3.51808 3.72168 3.72516 4.05625 4.29454 4.42958 4.46807 4.63438 4.72028 4.98980 5.10582 5.28438 5.39416 5.56178 5.61673 5.91519 6.18541 6.23191 6.40226 6.66447 7.50487 8.85819 Molecular weight = 338.00amu Principal moments of inertia in cm(-1) A = 0.011872 B = 0.006057 C = 0.005916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.935451 B = 4621.275998 C = 4731.602415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.137 4.137 3 C 0.265 3.735 4 H 0.027 0.973 5 C -0.599 4.599 6 H 0.060 0.940 7 C -0.017 4.017 8 N -0.931 5.931 9 Si 1.105 2.895 10 H -0.277 1.277 11 H -0.271 1.271 12 H -0.291 1.291 13 N -1.085 6.085 14 S 2.692 3.308 15 O -0.959 6.959 16 O -0.960 6.960 17 C -0.734 4.734 18 C 0.088 3.912 19 Cl 0.002 6.998 20 C -0.167 4.167 21 C 0.185 3.815 22 N -0.506 5.506 23 C 0.257 3.743 24 Cl 0.011 6.989 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.046 0.954 28 H 0.047 0.953 29 H 0.042 0.958 30 H 0.263 0.737 31 H 0.419 0.581 32 H 0.208 0.792 33 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.951 10.437 8.934 14.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.177 4.177 3 C 0.159 3.841 4 H 0.045 0.955 5 C -0.638 4.638 6 H 0.078 0.922 7 C -0.217 4.217 8 N -0.568 5.568 9 Si 0.929 3.071 10 H -0.203 1.203 11 H -0.196 1.196 12 H -0.217 1.217 13 N -0.846 5.846 14 S 2.776 3.224 15 O -0.949 6.949 16 O -0.950 6.950 17 C -0.822 4.822 18 C 0.052 3.948 19 Cl 0.031 6.969 20 C -0.188 4.188 21 C 0.029 3.971 22 N -0.218 5.218 23 C 0.091 3.909 24 Cl 0.040 6.960 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.255 0.745 32 H 0.225 0.775 33 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 4.574 9.430 7.787 13.057 hybrid contribution -0.551 0.483 1.458 1.632 sum 4.023 9.913 9.245 14.140 Atomic orbital electron populations 1.21469 0.95006 1.00022 1.01599 1.21949 0.97821 0.98416 0.99476 1.18574 0.93990 0.89289 0.82216 0.95496 1.22270 1.30683 1.18770 0.92083 0.92189 1.26817 0.95739 0.95624 1.03531 1.70853 1.24235 1.27530 1.34154 0.83071 0.75503 0.75815 0.72754 1.20257 1.19619 1.21734 1.55264 1.28930 1.70292 1.30153 1.01998 0.73211 0.73961 0.73184 1.93616 1.71267 1.72802 1.57244 1.93644 1.81405 1.35424 1.84565 1.31491 1.21263 1.08549 1.20879 1.21075 0.91915 0.90105 0.91700 1.98486 1.38425 1.78187 1.81759 1.22836 0.91310 1.04577 1.00071 1.24066 0.98912 0.87327 0.86768 1.67336 1.26335 1.10063 1.18105 1.21335 0.89544 0.89379 0.90592 1.98520 1.97707 1.05575 1.94170 0.92751 0.93144 0.93450 0.93387 0.93891 0.92636 0.74487 0.77515 0.74866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.93 9.47 71.98 0.68 -4.24 16 2 C -0.14 -6.20 5.59 30.59 0.17 -6.03 16 3 C 0.27 12.14 2.09 44.24 0.09 12.23 16 4 H 0.03 1.32 4.82 -2.39 -0.01 1.31 16 5 C -0.60 -29.69 7.45 25.60 0.19 -29.49 16 6 H 0.06 2.90 7.82 -2.91 -0.02 2.88 16 7 C -0.02 -0.86 5.27 84.65 0.45 -0.42 16 8 N -0.93 -52.46 12.89 21.45 0.28 -52.19 16 9 Si 1.10 46.91 29.91 68.60 2.05 48.96 16 10 H -0.28 -11.26 7.11 99.48 0.71 -10.56 16 11 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 12 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 13 N -1.08 -42.38 4.80 -172.52 -0.83 -43.21 16 14 S 2.69 100.67 5.34 -56.49 -0.30 100.37 16 15 O -0.96 -35.25 14.92 -128.00 -1.91 -37.16 16 16 O -0.96 -39.63 13.99 -128.00 -1.79 -41.42 16 17 C -0.73 -25.46 5.84 22.41 0.13 -25.32 16 18 C 0.09 2.48 6.35 22.53 0.14 2.62 16 19 Cl 0.00 0.05 25.81 -2.72 -0.07 -0.02 16 20 C -0.17 -3.25 9.93 22.38 0.22 -3.03 16 21 C 0.19 3.72 11.18 84.66 0.95 4.66 16 22 N -0.51 -15.49 10.34 -186.75 -1.93 -17.42 16 23 C 0.26 9.26 6.95 84.68 0.59 9.85 16 24 Cl 0.01 0.44 23.82 -2.72 -0.06 0.37 16 25 H 0.05 1.95 7.26 -2.39 -0.02 1.94 16 26 H 0.05 2.12 7.37 -2.39 -0.02 2.10 16 27 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.05 2.40 6.27 -2.39 -0.01 2.39 16 29 H 0.04 1.90 7.61 -2.39 -0.02 1.88 16 30 H 0.26 15.00 6.03 -92.71 -0.56 14.44 16 31 H 0.42 14.81 8.49 -96.76 -0.82 13.99 16 32 H 0.21 1.97 8.06 -2.91 -0.02 1.94 16 33 H 0.24 1.99 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -66.38 313.20 -0.38 -66.76 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 0.57 Total: 14.13 kcal Atomic # 6 Polarization: -42.78 SS G_CDS: 3.61 Total: -39.17 kcal Atomic # 7 Polarization: -110.34 SS G_CDS: -2.48 Total: -112.82 kcal Atomic # 8 Polarization: -74.88 SS G_CDS: -3.70 Total: -78.58 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.05 Total: 48.96 kcal Atomic # 16 Polarization: 100.67 SS G_CDS: -0.30 Total: 100.37 kcal Atomic # 17 Polarization: 0.48 SS G_CDS: -0.14 Total: 0.35 kcal Total: -66.38 -0.38 -66.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273920887.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.667 kcal (2) G-P(sol) polarization free energy of solvation -66.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds