Wall clock time and date at job start Tue Mar 31 2020 20:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47241 * 232.71516 * 3 2 1 5 5 C 1.37098 * 120.00266 * 263.93198 * 4 3 2 6 6 H 1.08000 * 120.00316 * 199.74861 * 5 4 3 7 7 C 1.38955 * 119.99701 * 19.74725 * 5 4 3 8 8 N 1.31403 * 119.99956 * 21.75124 * 7 5 4 9 9 Si 1.86802 * 119.99742 * 201.74868 * 7 5 4 10 10 H 1.48498 * 109.47195 * 90.00442 * 9 7 5 11 11 H 1.48505 * 109.46757 * 210.00547 * 9 7 5 12 12 H 1.48503 * 109.47265 * 330.00053 * 9 7 5 13 13 C 1.34775 * 119.99904 * 83.92558 * 4 3 2 14 14 O 1.21298 * 120.00274 * 180.02562 * 13 4 3 15 15 C 1.50693 * 120.00171 * 0.02562 * 13 4 3 16 16 C 1.50704 * 109.47633 * 179.97438 * 15 13 4 17 17 C 1.38832 * 120.76007 * 264.72550 * 16 15 13 18 18 C 1.38041 * 119.29435 * 179.77383 * 17 16 15 19 19 N 1.31970 * 120.85176 * 0.50392 * 18 17 16 20 20 C 1.32220 * 121.65904 * 359.74303 * 19 18 17 21 21 O 1.35703 * 119.68905 * 180.02562 * 20 19 18 22 22 C 1.38440 * 120.76146 * 84.99671 * 16 15 13 23 23 Br 1.89100 * 120.45510 * 359.95872 * 22 16 15 24 24 H 4.40640 * 5.51385 * 180.02562 * 4 1 2 25 25 H 1.09005 * 109.47032 * 112.71809 * 3 2 1 26 26 H 1.08999 * 109.47653 * 352.71874 * 3 2 1 27 27 H 0.96997 * 119.99992 * 179.97438 * 8 7 5 28 28 H 1.08996 * 109.47640 * 300.00002 * 15 13 4 29 29 H 1.09005 * 109.47549 * 59.99886 * 15 13 4 30 30 H 1.08001 * 120.35020 * 0.02562 * 17 16 15 31 31 H 1.08001 * 119.56664 * 180.24933 * 18 17 16 32 32 H 0.96703 * 113.99823 * 269.98056 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1339 0.8376 1.0989 5 6 3.4802 2.1433 0.8647 6 1 4.1231 2.6643 1.5586 7 6 3.0039 2.7962 -0.2656 8 7 1.9232 2.3579 -0.8712 9 14 3.9000 4.2972 -0.9243 10 1 4.9261 3.8687 -1.9085 11 1 2.9273 5.2035 -1.5859 12 1 4.5587 5.0125 0.1981 13 6 3.2423 0.3240 2.3403 14 8 3.6459 1.0170 3.2503 15 6 2.8622 -1.1113 2.5977 16 6 3.0749 -1.4339 4.0544 17 6 4.2543 -2.0261 4.4856 18 6 4.4191 -2.3042 5.8276 19 7 3.4682 -2.0235 6.6986 20 6 2.3293 -1.4642 6.3266 21 8 1.3789 -1.1924 7.2563 22 6 2.0966 -1.1517 4.9923 23 35 0.4663 -0.3514 4.4657 24 1 -1.0502 -0.0003 -0.0001 25 1 3.0091 0.3977 -0.9480 26 1 3.0098 -1.0185 0.1302 27 1 1.5905 2.8140 -1.6600 28 1 1.8133 -1.2610 2.3416 29 1 3.4825 -1.7668 1.9864 30 1 5.0361 -2.2629 3.7791 31 1 5.3364 -2.7611 6.1684 32 1 0.7512 -1.9139 7.3997 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281022456.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:50 Heat of formation + Delta-G solvation = 40.028443 kcal Electronic energy + Delta-G solvation = -20896.962207 eV Core-core repulsion = 17485.996291 eV Total energy + Delta-G solvation = -3410.965916 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.52202 -38.70351 -37.10866 -35.29065 -33.82054 -32.15147 -31.37026 -31.22747 -29.22119 -28.26997 -26.42290 -24.59951 -23.15479 -22.34056 -19.40754 -18.24608 -17.86618 -17.13471 -16.67339 -16.18878 -16.01718 -15.45756 -14.71332 -14.48268 -14.13536 -14.07935 -13.23150 -12.90250 -12.80132 -12.42183 -12.21832 -12.12191 -11.76027 -11.62543 -11.40493 -11.04217 -10.96832 -10.50620 -10.35226 -10.06035 -9.48765 -9.40342 -9.32204 -9.27778 -8.94553 -8.63924 -8.46984 -7.89317 -6.35797 -3.90010 0.89302 1.16324 1.80167 3.12792 3.24169 3.28429 3.44685 3.60906 3.68638 3.88388 4.01385 4.17019 4.60947 4.71141 4.91126 4.98322 5.02808 5.27728 5.34205 5.42439 5.59258 5.71123 5.78337 5.95451 6.19572 6.29157 6.43339 6.65221 6.98383 7.39600 7.54242 7.83599 8.00357 8.37819 8.78968 9.09145 9.30247 9.84338 10.64717 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.017843 B = 0.004822 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.842275 B = 5805.653408 C = 6392.713742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.116 4.116 3 C 0.231 3.769 4 N -0.436 5.436 5 C -0.315 4.315 6 H 0.104 0.896 7 C 0.034 3.966 8 N -0.859 5.859 9 Si 0.920 3.080 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.270 1.270 13 C 0.461 3.539 14 O -0.571 6.571 15 C -0.115 4.115 16 C 0.040 3.960 17 C -0.169 4.169 18 C 0.131 3.869 19 N -0.502 5.502 20 C 0.335 3.665 21 O -0.469 6.469 22 C -0.147 4.147 23 Br -0.015 7.015 24 H 0.197 0.803 25 H 0.107 0.893 26 H 0.062 0.938 27 H 0.268 0.732 28 H 0.105 0.895 29 H 0.097 0.903 30 H 0.145 0.855 31 H 0.165 0.835 32 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.656 -12.669 5.732 14.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C -0.118 4.118 3 C 0.108 3.892 4 N -0.154 5.154 5 C -0.442 4.442 6 H 0.121 0.879 7 C -0.171 4.171 8 N -0.496 5.496 9 Si 0.746 3.254 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.194 1.194 13 C 0.249 3.751 14 O -0.454 6.454 15 C -0.155 4.155 16 C 0.030 3.970 17 C -0.190 4.190 18 C -0.026 4.026 19 N -0.221 5.221 20 C 0.154 3.846 21 O -0.276 6.276 22 C -0.231 4.231 23 Br 0.070 6.930 24 H 0.215 0.785 25 H 0.125 0.875 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.123 0.877 29 H 0.115 0.885 30 H 0.163 0.837 31 H 0.183 0.817 32 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -1.804 -11.570 6.752 13.517 hybrid contribution -0.075 0.506 -1.312 1.408 sum -1.879 -11.064 5.440 12.471 Atomic orbital electron populations 1.24224 0.95315 1.05132 1.02620 1.23068 0.94264 0.96158 0.98269 1.18235 0.84473 0.92715 0.93802 1.43623 1.55988 1.10963 1.04871 1.19633 1.28357 0.87639 1.08619 0.87861 1.25291 0.94943 0.98977 0.97924 1.70083 1.17753 1.41351 1.20398 0.86027 0.79159 0.81013 0.79156 1.20322 1.21115 1.19407 1.19508 0.84794 0.87671 0.83139 1.90577 1.50647 1.61632 1.42589 1.20942 1.04793 0.98560 0.91192 1.19752 0.91467 0.90430 0.95375 1.22046 0.97576 1.01593 0.97755 1.22529 0.96466 0.94755 0.88832 1.67261 1.01641 1.14171 1.39056 1.18752 0.88282 0.92965 0.84595 1.84833 1.40942 1.42798 1.59027 1.22997 0.97415 1.07556 0.95083 1.96747 1.24031 1.80972 1.91246 0.78540 0.87473 0.92039 0.92135 0.87729 0.88480 0.83701 0.81743 0.74421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.07 19.25 29.55 0.57 -4.50 16 2 C -0.12 -2.47 10.75 -37.12 -0.40 -2.87 16 3 C 0.23 4.81 4.91 -6.83 -0.03 4.78 16 4 N -0.44 -10.51 2.60 -117.94 -0.31 -10.82 16 5 C -0.32 -8.43 9.28 -14.93 -0.14 -8.57 16 6 H 0.10 2.94 7.42 -52.49 -0.39 2.55 16 7 C 0.03 0.85 4.83 -17.47 -0.08 0.77 16 8 N -0.86 -22.01 9.59 55.50 0.53 -21.48 16 9 Si 0.92 20.16 29.61 -169.99 -5.03 15.13 16 10 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 11 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 12 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 13 C 0.46 10.64 7.56 -10.99 -0.08 10.55 16 14 O -0.57 -15.34 15.70 5.54 0.09 -15.26 16 15 C -0.11 -2.01 3.95 -29.04 -0.11 -2.13 16 16 C 0.04 0.67 4.41 -104.33 -0.46 0.21 16 17 C -0.17 -2.35 9.79 -39.43 -0.39 -2.73 16 18 C 0.13 1.70 11.17 -17.56 -0.20 1.51 16 19 N -0.50 -7.74 10.38 -13.31 -0.14 -7.88 16 20 C 0.34 5.39 7.74 -17.10 -0.13 5.26 16 21 O -0.47 -6.59 12.91 -18.81 -0.24 -6.83 16 22 C -0.15 -2.53 6.26 -39.22 -0.25 -2.78 16 23 Br -0.02 -0.26 31.54 -68.01 -2.14 -2.41 16 24 H 0.20 3.25 7.80 -54.08 -0.42 2.83 16 25 H 0.11 2.35 6.60 -51.93 -0.34 2.01 16 26 H 0.06 1.02 6.70 -51.93 -0.35 0.68 16 27 H 0.27 6.61 8.31 -40.82 -0.34 6.28 16 28 H 0.10 1.83 6.36 -51.93 -0.33 1.50 16 29 H 0.10 1.37 7.35 -51.93 -0.38 0.99 16 30 H 0.15 1.60 8.06 -52.49 -0.42 1.17 16 31 H 0.17 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.40 3.41 9.06 45.56 0.41 3.82 16 LS Contribution 309.27 15.07 4.66 4.66 Total: -1.00 -33.42 309.27 -6.07 -39.49 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -1.78 Total: 5.90 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -1.70 Total: -0.51 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: 0.09 Total: -40.18 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.16 Total: -22.09 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.03 Total: 15.13 kcal Atomic # 35 Polarization: -0.26 SS G_CDS: -2.14 Total: -2.41 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.42 -6.07 -39.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281022456.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.519 kcal (2) G-P(sol) polarization free energy of solvation -33.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds