Wall clock time and date at job start Tue Mar 31 2020 20:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47241 * 232.71516 * 3 2 1 5 5 C 1.37098 * 120.00266 * 263.93198 * 4 3 2 6 6 H 1.08000 * 120.00316 * 199.74861 * 5 4 3 7 7 C 1.38955 * 119.99701 * 19.74725 * 5 4 3 8 8 N 1.31403 * 119.99956 * 21.75124 * 7 5 4 9 9 Si 1.86802 * 119.99742 * 201.74868 * 7 5 4 10 10 H 1.48498 * 109.47195 * 90.00442 * 9 7 5 11 11 H 1.48505 * 109.46757 * 210.00547 * 9 7 5 12 12 H 1.48503 * 109.47265 * 330.00053 * 9 7 5 13 13 C 1.34775 * 119.99904 * 83.92558 * 4 3 2 14 14 O 1.21298 * 120.00274 * 180.02562 * 13 4 3 15 15 C 1.50693 * 120.00171 * 0.02562 * 13 4 3 16 16 C 1.50704 * 109.47633 * 179.97438 * 15 13 4 17 17 C 1.38832 * 120.76007 * 264.72550 * 16 15 13 18 18 C 1.38041 * 119.29435 * 179.77383 * 17 16 15 19 19 N 1.31970 * 120.85176 * 0.50392 * 18 17 16 20 20 C 1.32220 * 121.65904 * 359.74303 * 19 18 17 21 21 O 1.35703 * 119.68905 * 180.02562 * 20 19 18 22 22 C 1.38440 * 120.76146 * 84.99671 * 16 15 13 23 23 Br 1.89100 * 120.45510 * 359.95872 * 22 16 15 24 24 H 4.40640 * 5.51385 * 180.02562 * 4 1 2 25 25 H 1.09005 * 109.47032 * 112.71809 * 3 2 1 26 26 H 1.08999 * 109.47653 * 352.71874 * 3 2 1 27 27 H 0.96997 * 119.99992 * 179.97438 * 8 7 5 28 28 H 1.08996 * 109.47640 * 300.00002 * 15 13 4 29 29 H 1.09005 * 109.47549 * 59.99886 * 15 13 4 30 30 H 1.08001 * 120.35020 * 0.02562 * 17 16 15 31 31 H 1.08001 * 119.56664 * 180.24933 * 18 17 16 32 32 H 0.96703 * 113.99823 * 269.98056 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1339 0.8376 1.0989 5 6 3.4802 2.1433 0.8647 6 1 4.1231 2.6643 1.5586 7 6 3.0039 2.7962 -0.2656 8 7 1.9232 2.3579 -0.8712 9 14 3.9000 4.2972 -0.9243 10 1 4.9261 3.8687 -1.9085 11 1 2.9273 5.2035 -1.5859 12 1 4.5587 5.0125 0.1981 13 6 3.2423 0.3240 2.3403 14 8 3.6459 1.0170 3.2503 15 6 2.8622 -1.1113 2.5977 16 6 3.0749 -1.4339 4.0544 17 6 4.2543 -2.0261 4.4856 18 6 4.4191 -2.3042 5.8276 19 7 3.4682 -2.0235 6.6986 20 6 2.3293 -1.4642 6.3266 21 8 1.3789 -1.1924 7.2563 22 6 2.0966 -1.1517 4.9923 23 35 0.4663 -0.3514 4.4657 24 1 -1.0502 -0.0003 -0.0001 25 1 3.0091 0.3977 -0.9480 26 1 3.0098 -1.0185 0.1302 27 1 1.5905 2.8140 -1.6600 28 1 1.8133 -1.2610 2.3416 29 1 3.4825 -1.7668 1.9864 30 1 5.0361 -2.2629 3.7791 31 1 5.3364 -2.7611 6.1684 32 1 0.7512 -1.9139 7.3997 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281022456.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:49 Heat of formation + Delta-G solvation = 15.338550 kcal Electronic energy + Delta-G solvation = -20898.032841 eV Core-core repulsion = 17485.996291 eV Total energy + Delta-G solvation = -3412.036550 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.69536 -40.38909 -38.23521 -37.06143 -35.13926 -33.95038 -32.98416 -32.56296 -30.42187 -29.65753 -28.10261 -26.37871 -24.27087 -23.63222 -20.99713 -19.68870 -19.36396 -18.44733 -18.26109 -17.89188 -17.18611 -16.59827 -16.44350 -16.04508 -15.85011 -15.32753 -14.58786 -14.39543 -14.24009 -13.97692 -13.72640 -13.51427 -13.41172 -12.84238 -12.79360 -12.73640 -12.42334 -12.24787 -12.15767 -11.33116 -11.13558 -11.06448 -10.71688 -10.57456 -10.55177 -10.21107 -9.79838 -9.78016 -8.28703 -5.89980 -0.22246 -0.01226 0.56432 1.37525 1.43930 1.53911 1.91524 2.17856 2.35724 2.40884 2.43786 2.56958 3.07571 3.24976 3.46257 3.67653 3.83739 3.91080 4.12093 4.18349 4.25521 4.49967 4.55894 4.68037 4.78714 4.97965 5.09496 5.41589 5.45586 5.51092 6.09457 6.46116 6.47188 6.76354 7.18243 7.20301 7.45060 8.01642 8.69262 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.017843 B = 0.004822 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.842275 B = 5805.653408 C = 6392.713742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.149 4.149 3 C 0.231 3.769 4 N -0.449 5.449 5 C -0.347 4.347 6 H 0.072 0.928 7 C 0.006 3.994 8 N -0.869 5.869 9 Si 0.978 3.022 10 H -0.262 1.262 11 H -0.282 1.282 12 H -0.281 1.281 13 C 0.458 3.542 14 O -0.618 6.618 15 C -0.102 4.102 16 C 0.016 3.984 17 C -0.166 4.166 18 C 0.137 3.863 19 N -0.515 5.515 20 C 0.329 3.671 21 O -0.479 6.479 22 C -0.168 4.168 23 Br -0.031 7.031 24 H 0.225 0.775 25 H 0.091 0.909 26 H 0.105 0.895 27 H 0.270 0.730 28 H 0.104 0.896 29 H 0.135 0.865 30 H 0.177 0.823 31 H 0.209 0.791 32 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.002 -14.172 5.395 15.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.150 4.150 3 C 0.109 3.891 4 N -0.167 5.167 5 C -0.475 4.475 6 H 0.090 0.910 7 C -0.198 4.198 8 N -0.506 5.506 9 Si 0.803 3.197 10 H -0.187 1.187 11 H -0.207 1.207 12 H -0.206 1.206 13 C 0.248 3.752 14 O -0.504 6.504 15 C -0.142 4.142 16 C 0.006 3.994 17 C -0.186 4.186 18 C -0.019 4.019 19 N -0.235 5.235 20 C 0.148 3.852 21 O -0.289 6.289 22 C -0.251 4.251 23 Br 0.054 6.946 24 H 0.242 0.758 25 H 0.109 0.891 26 H 0.122 0.878 27 H 0.080 0.920 28 H 0.123 0.877 29 H 0.153 0.847 30 H 0.194 0.806 31 H 0.226 0.774 32 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -1.182 -13.113 6.395 14.637 hybrid contribution -0.286 0.936 -1.136 1.499 sum -1.468 -12.177 5.259 13.345 Atomic orbital electron populations 1.24996 0.96259 1.03962 1.01314 1.23382 0.94929 0.97265 0.99455 1.18357 0.84515 0.94162 0.92058 1.43800 1.56146 1.10523 1.06231 1.19467 1.29426 0.89397 1.09185 0.90988 1.25887 0.95262 1.01160 0.97491 1.70171 1.17982 1.42085 1.20317 0.85172 0.78316 0.77997 0.78252 1.18721 1.20726 1.20626 1.20339 0.83089 0.89644 0.82139 1.90538 1.52437 1.63516 1.43930 1.20822 1.05376 0.95147 0.92831 1.19901 0.92784 0.91918 0.94790 1.22447 0.97005 1.00280 0.98861 1.23294 0.97051 0.93169 0.88354 1.67386 1.01836 1.14513 1.39772 1.18867 0.88908 0.92936 0.84483 1.84772 1.41317 1.44323 1.58476 1.23146 0.97374 1.08691 0.95928 1.96701 1.25056 1.81470 1.91387 0.75796 0.89101 0.87767 0.91964 0.87748 0.84674 0.80572 0.77401 0.71988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.51 19.25 74.32 1.43 -8.08 16 2 C -0.15 -6.21 10.75 31.12 0.33 -5.88 16 3 C 0.23 9.45 4.91 84.57 0.42 9.87 16 4 N -0.45 -21.74 2.60 -645.42 -1.68 -23.42 16 5 C -0.35 -19.01 9.28 84.04 0.78 -18.23 16 6 H 0.07 4.30 7.42 -2.91 -0.02 4.28 16 7 C 0.01 0.30 4.83 84.93 0.41 0.71 16 8 N -0.87 -44.40 9.59 21.66 0.21 -44.19 16 9 Si 0.98 41.60 29.61 68.60 2.03 43.63 16 10 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 11 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 12 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 13 C 0.46 21.12 7.56 87.65 0.66 21.78 16 14 O -0.62 -33.86 15.70 -3.09 -0.05 -33.91 16 15 C -0.10 -3.42 3.95 29.10 0.11 -3.31 16 16 C 0.02 0.51 4.41 -19.67 -0.09 0.42 16 17 C -0.17 -4.11 9.79 22.37 0.22 -3.90 16 18 C 0.14 3.15 11.17 84.63 0.95 4.10 16 19 N -0.52 -14.88 10.38 -308.88 -3.21 -18.08 16 20 C 0.33 10.27 7.74 84.82 0.66 10.93 16 21 O -0.48 -13.16 12.91 -90.23 -1.17 -14.33 16 22 C -0.17 -5.67 6.26 22.50 0.14 -5.53 16 23 Br -0.03 -1.08 31.54 -20.37 -0.64 -1.72 16 24 H 0.23 6.93 7.80 -4.41 -0.03 6.90 16 25 H 0.09 3.97 6.60 -2.38 -0.02 3.96 16 26 H 0.10 3.24 6.70 -2.39 -0.02 3.22 16 27 H 0.27 13.18 8.31 -92.71 -0.77 12.41 16 28 H 0.10 3.53 6.36 -2.39 -0.02 3.51 16 29 H 0.14 3.39 7.35 -2.38 -0.02 3.37 16 30 H 0.18 3.15 8.06 -2.91 -0.02 3.12 16 31 H 0.21 2.79 8.06 -2.91 -0.02 2.76 16 32 H 0.42 6.87 9.06 -74.06 -0.67 6.19 16 Total: -1.00 -73.92 309.27 2.03 -71.89 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 0.51 Total: 17.25 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: 6.02 Total: 2.88 kcal Atomic # 7 Polarization: -81.02 SS G_CDS: -4.68 Total: -85.69 kcal Atomic # 8 Polarization: -47.02 SS G_CDS: -1.21 Total: -48.23 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Atomic # 35 Polarization: -1.08 SS G_CDS: -0.64 Total: -1.72 kcal Total: -73.92 2.03 -71.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281022456.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.224 kcal (2) G-P(sol) polarization free energy of solvation -73.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds