Wall clock time and date at job start Tue Mar 31 2020 21:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46499 * 120.00220 * 2 1 4 4 C 1.50703 * 109.47002 * 269.99503 * 3 2 1 5 5 H 1.08005 * 119.99697 * 359.97438 * 4 3 2 6 6 C 1.37872 * 119.99845 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00340 * 0.02562 * 6 4 3 8 8 Si 1.86809 * 119.99808 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47145 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46924 * 119.99956 * 8 6 4 11 11 H 1.48497 * 109.47470 * 239.99950 * 8 6 4 12 12 C 1.34777 * 119.99629 * 179.97438 * 2 1 3 13 13 O 1.21289 * 119.99815 * 185.56402 * 12 2 1 14 14 C 1.50701 * 120.00060 * 5.56087 * 12 2 1 15 15 C 1.50693 * 115.54975 * 66.02147 * 14 12 2 16 16 C 1.38231 * 120.41308 * 209.54542 * 15 14 12 17 17 N 1.31858 * 120.78200 * 179.72307 * 16 15 14 18 18 C 1.31872 * 121.73886 * 0.25035 * 17 16 15 19 19 C 1.38281 * 120.75338 * 0.02562 * 18 17 16 20 20 Br 1.89096 * 120.42971 * 179.97438 * 19 18 17 21 21 C 1.38613 * 120.41458 * 29.77473 * 15 14 12 22 22 C 1.53005 * 117.49486 * 211.68710 * 14 12 2 23 23 C 1.52999 * 117.49920 * 280.34758 * 14 12 2 24 24 H 1.08991 * 109.47433 * 264.79285 * 1 2 3 25 25 H 1.09007 * 109.46653 * 24.79498 * 1 2 3 26 26 H 1.09001 * 109.47049 * 144.78898 * 1 2 3 27 27 H 1.08997 * 109.47238 * 29.99624 * 3 2 1 28 28 H 1.09004 * 109.47242 * 149.99883 * 3 2 1 29 29 H 0.97003 * 120.00032 * 180.02562 * 7 6 4 30 30 H 1.07993 * 119.61018 * 359.97438 * 16 15 14 31 31 H 1.08003 * 119.62587 * 180.02562 * 18 17 16 32 32 H 1.08007 * 120.79707 * 0.03419 * 21 15 14 33 33 H 1.08998 * 117.49444 * 214.99846 * 22 14 12 34 34 H 1.08999 * 117.50388 * 0.02744 * 22 14 12 35 35 H 1.09000 * 117.49807 * 359.97438 * 23 14 12 36 36 H 1.08999 * 117.49879 * 144.97840 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7036 -1.4209 5 1 2.0983 1.0955 -2.2417 6 6 3.1271 2.8772 -1.6728 7 7 3.5553 3.6169 -0.6732 8 14 3.4392 3.4160 -3.4340 9 1 2.8611 2.4161 -4.3674 10 1 2.8022 4.7369 -3.6678 11 1 4.9018 3.5237 -3.6670 12 6 2.1388 -1.1672 0.0005 13 8 3.3474 -1.1697 0.1024 14 6 1.3905 -2.4693 -0.1254 15 6 0.6947 -2.6943 -1.4430 16 6 -0.4543 -3.4602 -1.5057 17 7 -1.0720 -3.6573 -2.6539 18 6 -0.6222 -3.1416 -3.7811 19 6 0.5247 -2.3691 -3.7973 20 35 1.1619 -1.6347 -5.4191 21 6 1.2015 -2.1398 -2.6079 22 6 1.9778 -3.6927 0.5814 23 6 0.7171 -3.0216 1.1326 24 1 -0.3634 -0.0933 1.0233 25 1 -0.3633 0.9330 -0.4310 26 1 -0.3633 -0.8396 -0.5925 27 1 1.6085 2.0284 0.5138 28 1 3.1500 1.1383 0.5139 29 1 4.0321 4.4428 -0.8505 30 1 -0.8530 -3.8990 -0.6031 31 1 -1.1556 -3.3245 -4.7022 32 1 2.0999 -1.5405 -2.5897 33 1 1.8606 -4.6602 0.0934 34 1 2.9050 -3.5557 1.1378 35 1 0.8157 -2.4434 2.0513 36 1 -0.2294 -3.5474 1.0071 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281120178.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:33 Heat of formation + Delta-G solvation = 35.700421 kcal Electronic energy + Delta-G solvation = -21566.424674 eV Core-core repulsion = 18291.104175 eV Total energy + Delta-G solvation = -3275.320498 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.037 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.90997 -39.16642 -36.53819 -34.89771 -33.20368 -32.60007 -31.68106 -29.49048 -28.04940 -26.14337 -24.90527 -23.90846 -23.17483 -22.27021 -21.15429 -18.39658 -17.56208 -16.80166 -16.54524 -16.19758 -15.49759 -15.18363 -14.64923 -14.46746 -14.26567 -13.98586 -13.44849 -13.20037 -12.59407 -12.41446 -12.18908 -12.13236 -11.92412 -11.54257 -11.40506 -11.30825 -11.02332 -10.91026 -10.70251 -10.59439 -10.44977 -10.19264 -9.79238 -9.66648 -9.42015 -9.02870 -8.80982 -8.47910 -7.72236 -6.08885 -4.14101 0.70769 1.03023 1.48534 3.08213 3.27253 3.35357 3.38634 3.40477 3.69370 3.94069 4.17244 4.37208 4.41200 4.65874 4.78522 4.78896 4.82800 4.91003 5.12077 5.25631 5.36047 5.51880 5.63735 5.69508 5.80306 5.86985 5.90213 6.04821 6.06557 6.18078 6.33721 6.98479 7.37236 7.46319 7.64936 7.87110 8.16859 8.30927 8.81824 8.98187 9.51714 10.99183 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.009148 B = 0.006852 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3060.170156 B = 4085.250691 C = 6505.062796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.591 5.591 3 C 0.243 3.757 4 C -0.527 4.527 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.893 5.893 8 Si 0.891 3.109 9 H -0.269 1.269 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.542 3.458 13 O -0.534 6.534 14 C -0.119 4.119 15 C -0.076 4.076 16 C 0.109 3.891 17 N -0.471 5.471 18 C 0.122 3.878 19 C -0.137 4.137 20 Br -0.031 7.031 21 C -0.028 4.028 22 C -0.134 4.134 23 C -0.156 4.156 24 H 0.046 0.954 25 H 0.074 0.926 26 H 0.054 0.946 27 H 0.034 0.966 28 H 0.046 0.954 29 H 0.263 0.737 30 H 0.163 0.837 31 H 0.164 0.836 32 H 0.151 0.849 33 H 0.102 0.898 34 H 0.110 0.890 35 H 0.106 0.894 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.007 -14.784 -3.620 18.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.322 5.322 3 C 0.125 3.875 4 C -0.566 4.566 5 H 0.076 0.924 6 C -0.138 4.138 7 N -0.532 5.532 8 Si 0.719 3.281 9 H -0.194 1.194 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.327 3.673 13 O -0.411 6.411 14 C -0.123 4.123 15 C -0.080 4.080 16 C -0.048 4.048 17 N -0.180 5.180 18 C -0.037 4.037 19 C -0.218 4.218 20 Br 0.054 6.946 21 C -0.055 4.055 22 C -0.171 4.171 23 C -0.193 4.193 24 H 0.064 0.936 25 H 0.093 0.907 26 H 0.073 0.927 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.180 0.820 31 H 0.181 0.819 32 H 0.168 0.832 33 H 0.120 0.880 34 H 0.129 0.871 35 H 0.124 0.876 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -9.802 -14.800 -4.150 18.230 hybrid contribution 0.770 0.957 -0.704 1.416 sum -9.032 -13.843 -4.855 17.227 Atomic orbital electron populations 1.21668 0.81340 1.02682 1.00278 1.48061 1.06242 1.07435 1.70444 1.19370 0.92647 0.77817 0.97702 1.21427 1.36589 1.06448 0.92091 0.92392 1.24904 0.95265 0.96342 0.97332 1.69937 1.38258 1.14335 1.30670 0.86530 0.78193 0.78580 0.84821 1.19382 1.20898 1.20804 1.19007 0.87026 0.83468 0.77824 1.90687 1.13712 1.86718 1.49978 1.20168 1.04585 0.96210 0.91357 1.19796 0.96210 0.98706 0.93252 1.22773 0.91123 0.94651 0.96288 1.67855 1.31149 1.20651 0.98301 1.22788 0.91740 0.92026 0.97161 1.22955 1.00493 1.04543 0.93845 1.96783 1.87880 1.83649 1.26264 1.21630 0.98964 0.94965 0.89959 1.23088 0.98244 0.94432 1.01325 1.23183 0.97386 1.02928 0.95793 0.93591 0.90724 0.92708 0.94847 0.93635 0.92716 0.81963 0.81894 0.83163 0.87970 0.87123 0.87600 0.87664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.37 10.09 59.85 0.60 1.97 16 2 N -0.59 -12.23 2.86 -182.95 -0.52 -12.75 16 3 C 0.24 6.24 5.18 -5.19 -0.03 6.22 16 4 C -0.53 -14.59 9.39 -34.44 -0.32 -14.91 16 5 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 6 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 7 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 8 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 9 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 C 0.54 10.91 5.83 -10.98 -0.06 10.84 16 13 O -0.53 -13.06 16.26 5.55 0.09 -12.97 16 14 C -0.12 -1.74 1.38 -156.81 -0.22 -1.95 16 15 C -0.08 -1.07 3.56 -104.49 -0.37 -1.44 16 16 C 0.11 1.28 10.48 -17.54 -0.18 1.10 16 17 N -0.47 -5.94 10.36 -13.23 -0.14 -6.08 16 18 C 0.12 1.50 10.95 -17.52 -0.19 1.31 16 19 C -0.14 -1.93 6.25 -39.37 -0.25 -2.18 16 20 Br -0.03 -0.43 33.74 -68.01 -2.29 -2.72 16 21 C -0.03 -0.44 9.20 -39.25 -0.36 -0.80 16 22 C -0.13 -1.61 9.73 -26.69 -0.26 -1.87 16 23 C -0.16 -1.66 9.43 -26.69 -0.25 -1.91 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 1.26 8.03 -51.93 -0.42 0.84 16 26 H 0.05 0.80 5.38 -51.93 -0.28 0.52 16 27 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 28 H 0.05 1.32 7.35 -51.93 -0.38 0.94 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.16 1.43 5.97 -52.49 -0.31 1.12 16 31 H 0.16 1.60 8.06 -52.48 -0.42 1.18 16 32 H 0.15 2.84 7.43 -52.48 -0.39 2.45 16 33 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.11 1.46 8.01 -51.93 -0.42 1.04 16 35 H 0.11 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.11 0.82 6.14 -51.93 -0.32 0.50 16 LS Contribution 329.26 15.07 4.96 4.96 Total: -1.00 -32.13 329.26 -8.35 -40.48 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -4.17 Total: -0.15 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -1.99 Total: -1.92 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: 0.08 Total: -44.36 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.09 Total: -12.97 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 35 Polarization: -0.43 SS G_CDS: -2.29 Total: -2.72 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.13 -8.35 -40.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281120178.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.183 kcal (2) G-P(sol) polarization free energy of solvation -32.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds