Wall clock time and date at job start Tue Mar 31 2020 21:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46940 * 2 1 4 4 C 1.50697 * 109.47165 * 119.99652 * 2 1 3 5 5 H 1.07997 * 120.00704 * 114.23430 * 4 2 1 6 6 C 1.37883 * 119.99916 * 294.24179 * 4 2 1 7 7 N 1.31516 * 120.00177 * 156.46411 * 6 4 2 8 8 Si 1.86800 * 119.99905 * 336.45773 * 6 4 2 9 9 H 1.48506 * 109.46966 * 180.02562 * 8 6 4 10 10 H 1.48502 * 109.46986 * 300.00146 * 8 6 4 11 11 H 1.48501 * 109.47273 * 60.00306 * 8 6 4 12 12 N 1.46500 * 109.47610 * 239.99990 * 2 1 3 13 13 C 1.34770 * 120.00064 * 84.99855 * 12 2 1 14 14 O 1.21279 * 120.00580 * 5.00545 * 13 12 2 15 15 C 1.50707 * 119.99969 * 185.00546 * 13 12 2 16 16 C 1.50699 * 115.54985 * 303.46364 * 15 13 12 17 17 C 1.38228 * 120.41794 * 149.43868 * 16 15 13 18 18 N 1.31851 * 120.78682 * 179.97438 * 17 16 15 19 19 C 1.31875 * 121.73631 * 0.02562 * 18 17 16 20 20 C 1.38276 * 120.75164 * 0.02562 * 19 18 17 21 21 Br 1.89101 * 120.42894 * 180.02562 * 20 19 18 22 22 C 1.38622 * 120.41121 * 329.15706 * 16 15 13 23 23 C 1.52998 * 117.50100 * 157.78691 * 15 13 12 24 24 C 1.53003 * 117.49905 * 89.12740 * 15 13 12 25 25 H 1.08996 * 109.47131 * 174.00676 * 1 2 3 26 26 H 1.09001 * 109.47879 * 294.00956 * 1 2 3 27 27 H 1.09008 * 109.46733 * 54.00993 * 1 2 3 28 28 H 0.97001 * 119.99893 * 354.94677 * 7 6 4 29 29 H 0.96998 * 119.99488 * 265.00141 * 12 2 1 30 30 H 1.08001 * 119.60278 * 359.96949 * 17 16 15 31 31 H 1.08003 * 119.62377 * 180.02562 * 19 18 17 32 32 H 1.07992 * 120.79147 * 0.02562 * 22 16 15 33 33 H 1.09001 * 117.49539 * 0.02562 * 23 15 13 34 34 H 1.09002 * 117.49872 * 145.01688 * 23 15 13 35 35 H 1.08994 * 117.49863 * 214.98138 * 24 15 13 36 36 H 1.09000 * 117.49947 * 359.97438 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.5742 -1.6395 1.1343 6 6 1.7998 -0.1740 2.4793 7 7 1.8015 -0.9519 3.5397 8 14 1.4827 1.6575 2.6649 9 1 1.2640 1.9792 4.0981 10 1 2.6555 2.4165 2.1611 11 1 0.2771 2.0329 1.8833 12 7 2.0184 -0.6906 -1.1961 13 6 2.1472 -0.0183 -2.3570 14 8 1.9461 1.1772 -2.3911 15 6 2.5410 -0.7521 -3.6131 16 6 3.8352 -1.5206 -3.5381 17 6 4.0104 -2.6707 -4.2846 18 7 5.1398 -3.3485 -4.2249 19 6 6.1408 -2.9625 -3.4580 20 6 6.0382 -1.8225 -2.6821 21 35 7.4795 -1.2769 -1.5862 22 6 4.8670 -1.0796 -2.7242 23 6 2.1799 -0.1054 -4.9518 24 6 1.4178 -1.3418 -4.4685 25 1 -0.3633 -1.0220 -0.1073 26 1 -0.3635 0.4181 0.9387 27 1 -0.3633 0.6040 -0.8316 28 1 1.8931 -1.9120 3.4368 29 1 2.2491 -1.6317 -1.1525 30 1 3.2126 -3.0184 -4.9241 31 1 7.0510 -3.5434 -3.4356 32 1 4.7599 -0.1823 -2.1330 33 1 1.6578 0.8510 -4.9241 34 1 2.8783 -0.2360 -5.7785 35 1 1.6151 -2.2853 -4.9773 36 1 0.3940 -1.1994 -4.1225 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281438841.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:51 Heat of formation + Delta-G solvation = 23.572579 kcal Electronic energy + Delta-G solvation = -21172.185704 eV Core-core repulsion = 17896.339303 eV Total energy + Delta-G solvation = -3275.846401 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.037 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.93747 -39.29389 -36.76461 -34.95777 -33.32926 -32.50953 -31.76245 -29.73508 -29.58495 -25.32693 -24.79057 -24.01099 -22.78191 -22.25700 -20.27222 -19.42296 -18.00280 -17.52659 -16.90427 -16.39187 -15.44702 -15.25527 -14.71590 -14.39243 -14.17178 -13.81290 -13.44747 -13.28129 -12.86981 -12.68853 -12.28904 -12.25395 -11.74553 -11.64373 -11.49821 -11.43697 -11.14747 -10.82378 -10.57002 -10.54137 -10.17349 -9.92675 -9.86703 -9.55654 -9.29307 -9.18610 -8.94994 -8.33143 -8.26556 -6.63081 -4.24120 0.61454 0.91130 1.37265 2.88008 3.30798 3.36950 3.43037 3.56292 3.62662 3.87787 4.08625 4.27786 4.40843 4.55751 4.64426 4.70424 4.76649 4.93955 5.03246 5.08074 5.29790 5.44667 5.62024 5.70223 5.75946 5.91530 5.98030 6.23042 6.32688 6.47089 6.60675 6.88669 7.22289 7.30061 7.56609 7.60729 8.21363 8.38064 8.64039 8.86207 9.41875 10.75234 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.010362 B = 0.005116 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2701.602047 B = 5471.772275 C = 7329.115873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.242 3.758 3 H 0.042 0.958 4 C -0.625 4.625 5 H 0.062 0.938 6 C 0.048 3.952 7 N -0.888 5.888 8 Si 1.031 2.969 9 H -0.282 1.282 10 H -0.280 1.280 11 H -0.274 1.274 12 N -0.692 5.692 13 C 0.539 3.461 14 O -0.547 6.547 15 C -0.125 4.125 16 C -0.084 4.084 17 C 0.113 3.887 18 N -0.471 5.471 19 C 0.124 3.876 20 C -0.137 4.137 21 Br -0.029 7.029 22 C -0.031 4.031 23 C -0.131 4.131 24 C -0.151 4.151 25 H 0.044 0.956 26 H 0.060 0.940 27 H 0.027 0.973 28 H 0.271 0.729 29 H 0.394 0.606 30 H 0.164 0.836 31 H 0.165 0.835 32 H 0.147 0.853 33 H 0.113 0.887 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.580 -3.591 -16.574 18.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.139 3.861 3 H 0.060 0.940 4 C -0.662 4.662 5 H 0.080 0.920 6 C -0.160 4.160 7 N -0.520 5.520 8 Si 0.858 3.142 9 H -0.208 1.208 10 H -0.206 1.206 11 H -0.200 1.200 12 N -0.339 5.339 13 C 0.322 3.678 14 O -0.426 6.426 15 C -0.129 4.129 16 C -0.087 4.087 17 C -0.044 4.044 18 N -0.179 5.179 19 C -0.034 4.034 20 C -0.219 4.219 21 Br 0.056 6.944 22 C -0.058 4.058 23 C -0.169 4.169 24 C -0.188 4.188 25 H 0.063 0.937 26 H 0.079 0.921 27 H 0.046 0.954 28 H 0.081 0.919 29 H 0.226 0.774 30 H 0.181 0.819 31 H 0.182 0.818 32 H 0.165 0.835 33 H 0.131 0.869 34 H 0.121 0.879 35 H 0.125 0.875 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 7.796 -2.123 -15.497 17.477 hybrid contribution 0.033 -1.113 -0.669 1.299 sum 7.828 -3.236 -16.166 18.251 Atomic orbital electron populations 1.22424 0.98827 1.00026 1.00108 1.19034 0.90518 0.94214 0.82295 0.94049 1.21971 1.42249 1.11121 0.90897 0.91966 1.25608 0.92911 1.05828 0.91702 1.70864 1.42794 1.06459 1.31846 0.84211 0.77764 0.75839 0.76341 1.20778 1.20611 1.20022 1.46262 1.64217 1.13806 1.09599 1.19167 0.77942 0.86983 0.83671 1.90663 1.52039 1.14298 1.85608 1.20201 0.94414 1.04372 0.93888 1.19869 0.94173 0.96350 0.98281 1.22808 0.94971 0.90406 0.96237 1.67870 1.00381 1.30832 1.18776 1.22831 0.97790 0.92273 0.90554 1.22955 0.96002 1.00526 1.02403 1.96788 1.41197 1.90741 1.65674 1.21544 0.90299 0.98701 0.95303 1.23089 1.02168 0.98238 0.93368 1.23176 0.96346 0.98279 1.01008 0.93694 0.92148 0.95376 0.91902 0.77350 0.81873 0.81772 0.83500 0.86898 0.87909 0.87517 0.87446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.44 9.22 37.16 0.34 -3.10 16 2 C 0.24 5.73 2.20 -69.09 -0.15 5.58 16 3 H 0.04 1.07 6.07 -51.93 -0.32 0.75 16 4 C -0.63 -16.69 8.94 -34.44 -0.31 -16.99 16 5 H 0.06 1.75 7.96 -52.49 -0.42 1.33 16 6 C 0.05 1.32 5.20 -17.82 -0.09 1.23 16 7 N -0.89 -26.08 13.70 55.43 0.76 -25.32 16 8 Si 1.03 24.83 26.46 -169.99 -4.50 20.33 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.27 -6.22 6.17 56.52 0.35 -5.87 16 12 N -0.69 -13.75 5.05 -54.94 -0.28 -14.03 16 13 C 0.54 9.93 6.05 -10.99 -0.07 9.87 16 14 O -0.55 -11.97 16.13 5.56 0.09 -11.88 16 15 C -0.12 -1.69 2.39 -156.81 -0.37 -2.06 16 16 C -0.08 -1.08 5.39 -104.48 -0.56 -1.65 16 17 C 0.11 1.28 10.53 -17.55 -0.18 1.10 16 18 N -0.47 -5.76 10.36 -13.23 -0.14 -5.90 16 19 C 0.12 1.46 10.95 -17.52 -0.19 1.27 16 20 C -0.14 -1.78 6.25 -39.38 -0.25 -2.03 16 21 Br -0.03 -0.36 33.74 -68.01 -2.29 -2.66 16 22 C -0.03 -0.44 9.21 -39.25 -0.36 -0.81 16 23 C -0.13 -1.46 9.73 -26.69 -0.26 -1.72 16 24 C -0.15 -1.55 9.58 -26.69 -0.26 -1.81 16 25 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.06 1.38 5.52 -51.93 -0.29 1.09 16 27 H 0.03 0.58 8.14 -51.92 -0.42 0.16 16 28 H 0.27 7.89 8.73 -40.82 -0.36 7.53 16 29 H 0.39 7.31 8.45 -40.82 -0.35 6.96 16 30 H 0.16 1.39 5.96 -52.49 -0.31 1.08 16 31 H 0.17 1.53 8.06 -52.48 -0.42 1.10 16 32 H 0.15 2.36 7.46 -52.49 -0.39 1.97 16 33 H 0.11 1.38 7.85 -51.93 -0.41 0.97 16 34 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.11 0.80 6.12 -51.93 -0.32 0.49 16 36 H 0.11 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 326.19 15.07 4.92 4.92 Total: -1.00 -30.65 326.19 -8.27 -38.92 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -4.11 Total: 6.75 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -2.71 Total: -11.12 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: 0.34 Total: -45.25 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.09 Total: -11.88 kcal Atomic # 14 Polarization: 24.83 SS G_CDS: -4.50 Total: 20.33 kcal Atomic # 35 Polarization: -0.36 SS G_CDS: -2.29 Total: -2.66 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.65 -8.27 -38.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281438841.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.490 kcal (2) G-P(sol) polarization free energy of solvation -30.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds