Wall clock time and date at job start Tue Mar 31 2020 21:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46940 * 2 1 4 4 C 1.50697 * 109.47165 * 119.99652 * 2 1 3 5 5 H 1.07997 * 120.00704 * 114.23430 * 4 2 1 6 6 C 1.37883 * 119.99916 * 294.24179 * 4 2 1 7 7 N 1.31516 * 120.00177 * 156.46411 * 6 4 2 8 8 Si 1.86800 * 119.99905 * 336.45773 * 6 4 2 9 9 H 1.48506 * 109.46966 * 180.02562 * 8 6 4 10 10 H 1.48502 * 109.46986 * 300.00146 * 8 6 4 11 11 H 1.48501 * 109.47273 * 60.00306 * 8 6 4 12 12 N 1.46500 * 109.47610 * 239.99990 * 2 1 3 13 13 C 1.34770 * 120.00064 * 84.99855 * 12 2 1 14 14 O 1.21279 * 120.00580 * 5.00545 * 13 12 2 15 15 C 1.50707 * 119.99969 * 185.00546 * 13 12 2 16 16 C 1.50699 * 115.54985 * 303.46364 * 15 13 12 17 17 C 1.38228 * 120.41794 * 149.43868 * 16 15 13 18 18 N 1.31851 * 120.78682 * 179.97438 * 17 16 15 19 19 C 1.31875 * 121.73631 * 0.02562 * 18 17 16 20 20 C 1.38276 * 120.75164 * 0.02562 * 19 18 17 21 21 Br 1.89101 * 120.42894 * 180.02562 * 20 19 18 22 22 C 1.38622 * 120.41121 * 329.15706 * 16 15 13 23 23 C 1.52998 * 117.50100 * 157.78691 * 15 13 12 24 24 C 1.53003 * 117.49905 * 89.12740 * 15 13 12 25 25 H 1.08996 * 109.47131 * 174.00676 * 1 2 3 26 26 H 1.09001 * 109.47879 * 294.00956 * 1 2 3 27 27 H 1.09008 * 109.46733 * 54.00993 * 1 2 3 28 28 H 0.97001 * 119.99893 * 354.94677 * 7 6 4 29 29 H 0.96998 * 119.99488 * 265.00141 * 12 2 1 30 30 H 1.08001 * 119.60278 * 359.96949 * 17 16 15 31 31 H 1.08003 * 119.62377 * 180.02562 * 19 18 17 32 32 H 1.07992 * 120.79147 * 0.02562 * 22 16 15 33 33 H 1.09001 * 117.49539 * 0.02562 * 23 15 13 34 34 H 1.09002 * 117.49872 * 145.01688 * 23 15 13 35 35 H 1.08994 * 117.49863 * 214.98138 * 24 15 13 36 36 H 1.09000 * 117.49947 * 359.97438 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.5742 -1.6395 1.1343 6 6 1.7998 -0.1740 2.4793 7 7 1.8015 -0.9519 3.5397 8 14 1.4827 1.6575 2.6649 9 1 1.2640 1.9792 4.0981 10 1 2.6555 2.4165 2.1611 11 1 0.2771 2.0329 1.8833 12 7 2.0184 -0.6906 -1.1961 13 6 2.1472 -0.0183 -2.3570 14 8 1.9461 1.1772 -2.3911 15 6 2.5410 -0.7521 -3.6131 16 6 3.8352 -1.5206 -3.5381 17 6 4.0104 -2.6707 -4.2846 18 7 5.1398 -3.3485 -4.2249 19 6 6.1408 -2.9625 -3.4580 20 6 6.0382 -1.8225 -2.6821 21 35 7.4795 -1.2769 -1.5862 22 6 4.8670 -1.0796 -2.7242 23 6 2.1799 -0.1054 -4.9518 24 6 1.4178 -1.3418 -4.4685 25 1 -0.3633 -1.0220 -0.1073 26 1 -0.3635 0.4181 0.9387 27 1 -0.3633 0.6040 -0.8316 28 1 1.8931 -1.9120 3.4368 29 1 2.2491 -1.6317 -1.1525 30 1 3.2126 -3.0184 -4.9241 31 1 7.0510 -3.5434 -3.4356 32 1 4.7599 -0.1823 -2.1330 33 1 1.6578 0.8510 -4.9241 34 1 2.8783 -0.2360 -5.7785 35 1 1.6151 -2.2853 -4.9773 36 1 0.3940 -1.1994 -4.1225 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281438841.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:51 Heat of formation + Delta-G solvation = 3.573382 kcal Electronic energy + Delta-G solvation = -21173.052934 eV Core-core repulsion = 17896.339303 eV Total energy + Delta-G solvation = -3276.713631 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.037 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.99054 -40.60305 -37.96138 -36.71593 -34.53602 -34.26576 -32.76214 -31.51590 -30.55340 -26.99710 -26.26653 -25.00575 -23.95695 -23.19176 -21.96931 -20.96946 -19.66147 -18.74885 -18.08837 -17.53047 -17.03810 -16.46077 -15.87333 -15.55652 -15.34293 -15.29730 -15.08422 -14.67323 -14.37402 -14.25834 -13.92262 -13.47507 -13.34303 -13.25133 -12.54147 -12.48376 -12.38381 -12.17437 -12.04904 -11.79273 -11.78872 -11.58397 -11.26514 -11.03835 -10.59843 -10.54770 -10.48113 -9.99509 -9.87603 -8.83810 -6.44984 -0.31443 -0.09997 0.38869 1.42793 1.46664 1.51958 1.67136 2.26639 2.36245 2.39597 2.85533 2.92489 3.14919 3.38736 3.60827 3.62439 3.65776 3.75615 3.90902 4.06195 4.31294 4.45965 4.66084 4.66649 4.69760 4.72843 4.76245 4.86491 4.98741 5.05557 5.15783 5.31873 5.40143 5.55807 5.63023 5.98746 6.49360 6.63906 6.74026 7.21641 7.33056 8.53432 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.010362 B = 0.005116 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2701.602047 B = 5471.772275 C = 7329.115873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.245 3.755 3 H 0.022 0.978 4 C -0.621 4.621 5 H 0.038 0.962 6 C 0.006 3.994 7 N -0.917 5.917 8 Si 1.063 2.937 9 H -0.279 1.279 10 H -0.276 1.276 11 H -0.252 1.252 12 N -0.694 5.694 13 C 0.540 3.460 14 O -0.586 6.586 15 C -0.145 4.145 16 C -0.083 4.083 17 C 0.125 3.875 18 N -0.476 5.476 19 C 0.128 3.872 20 C -0.146 4.146 21 Br -0.033 7.033 22 C -0.053 4.053 23 C -0.123 4.123 24 C -0.125 4.125 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.040 0.960 28 H 0.261 0.739 29 H 0.400 0.600 30 H 0.200 0.800 31 H 0.188 0.812 32 H 0.118 0.882 33 H 0.098 0.902 34 H 0.130 0.870 35 H 0.145 0.855 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.024 -4.394 -19.203 20.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.141 3.859 3 H 0.039 0.961 4 C -0.658 4.658 5 H 0.056 0.944 6 C -0.197 4.197 7 N -0.550 5.550 8 Si 0.886 3.114 9 H -0.205 1.205 10 H -0.202 1.202 11 H -0.176 1.176 12 N -0.341 5.341 13 C 0.326 3.674 14 O -0.467 6.467 15 C -0.149 4.149 16 C -0.087 4.087 17 C -0.032 4.032 18 N -0.184 5.184 19 C -0.030 4.030 20 C -0.227 4.227 21 Br 0.052 6.948 22 C -0.080 4.080 23 C -0.160 4.160 24 C -0.161 4.161 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.234 0.766 30 H 0.217 0.783 31 H 0.205 0.795 32 H 0.136 0.864 33 H 0.116 0.884 34 H 0.148 0.852 35 H 0.163 0.837 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.245 -2.949 -18.154 19.768 hybrid contribution 0.251 -0.898 0.101 0.938 sum 7.496 -3.848 -18.053 19.923 Atomic orbital electron populations 1.22281 0.97328 1.00791 1.00136 1.18742 0.91531 0.92954 0.82705 0.96064 1.22099 1.41234 1.10136 0.92366 0.94360 1.26682 0.92593 1.08639 0.91760 1.70958 1.45369 1.06013 1.32685 0.83783 0.78777 0.72079 0.76785 1.20474 1.20204 1.17605 1.46088 1.64720 1.13989 1.09331 1.19899 0.76333 0.86638 0.84500 1.90634 1.53564 1.16172 1.86354 1.19994 0.96299 1.06364 0.92223 1.19829 0.93326 0.96922 0.98579 1.23276 0.95392 0.88983 0.95520 1.67985 1.00710 1.30879 1.18824 1.23191 0.98569 0.91648 0.89574 1.23008 0.95626 1.01096 1.02992 1.96774 1.41141 1.90928 1.65960 1.21443 0.91785 0.98467 0.96322 1.23213 1.02378 0.98184 0.92249 1.23408 0.94947 0.99480 0.98298 0.92810 0.93004 0.94130 0.93014 0.76648 0.78346 0.79522 0.86352 0.88389 0.85224 0.83689 0.87729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.37 9.22 71.98 0.66 -5.71 16 2 C 0.25 11.63 2.20 44.24 0.10 11.73 16 3 H 0.02 1.11 6.07 -2.39 -0.01 1.10 16 4 C -0.62 -33.78 8.94 25.60 0.23 -33.55 16 5 H 0.04 2.22 7.96 -2.91 -0.02 2.20 16 6 C 0.01 0.33 5.20 84.66 0.44 0.77 16 7 N -0.92 -54.95 13.70 21.45 0.29 -54.65 16 8 Si 1.06 50.27 26.46 68.60 1.82 52.08 16 9 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 11 H -0.25 -10.91 6.17 99.48 0.61 -10.29 16 12 N -0.69 -27.58 5.05 -446.11 -2.25 -29.83 16 13 C 0.54 19.68 6.05 87.66 0.53 20.21 16 14 O -0.59 -25.77 16.13 -3.03 -0.05 -25.82 16 15 C -0.14 -3.63 2.39 -53.67 -0.13 -3.75 16 16 C -0.08 -1.99 5.39 -19.78 -0.11 -2.10 16 17 C 0.13 2.38 10.53 84.69 0.89 3.27 16 18 N -0.48 -10.15 10.36 -195.77 -2.03 -12.18 16 19 C 0.13 2.76 10.95 84.70 0.93 3.69 16 20 C -0.15 -3.69 6.25 22.40 0.14 -3.55 16 21 Br -0.03 -0.82 33.74 -20.37 -0.69 -1.51 16 22 C -0.05 -1.49 9.21 22.48 0.21 -1.29 16 23 C -0.12 -2.37 9.73 30.62 0.30 -2.07 16 24 C -0.12 -2.06 9.58 30.62 0.29 -1.76 16 25 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.05 2.31 5.52 -2.39 -0.01 2.30 16 27 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 28 H 0.26 15.66 8.73 -92.71 -0.81 14.85 16 29 H 0.40 14.82 8.45 -92.71 -0.78 14.04 16 30 H 0.20 2.24 5.96 -2.91 -0.02 2.22 16 31 H 0.19 3.03 8.06 -2.91 -0.02 3.01 16 32 H 0.12 4.00 7.46 -2.91 -0.02 3.98 16 33 H 0.10 2.22 7.85 -2.39 -0.02 2.20 16 34 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.15 1.29 6.12 -2.39 -0.01 1.27 16 36 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -67.90 326.19 1.79 -66.11 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: 0.21 Total: 19.89 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: 4.48 Total: -14.10 kcal Atomic # 7 Polarization: -92.68 SS G_CDS: -3.99 Total: -96.66 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.05 Total: -25.82 kcal Atomic # 14 Polarization: 50.27 SS G_CDS: 1.82 Total: 52.08 kcal Atomic # 35 Polarization: -0.82 SS G_CDS: -0.69 Total: -1.51 kcal Total: -67.90 1.79 -66.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281438841.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.688 kcal (2) G-P(sol) polarization free energy of solvation -67.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds