Wall clock time and date at job start Tue Mar 31 2020 21:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00063 * 2 1 4 4 H 1.48501 * 109.47118 * 239.99992 * 3 2 1 5 5 H 1.48504 * 109.46965 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47287 * 119.99808 * 3 2 1 7 7 C 1.37879 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99621 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00067 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47197 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47146 * 179.97438 * 10 9 7 12 12 C 1.34769 * 119.99902 * 180.02562 * 11 10 9 13 13 O 1.21282 * 120.00502 * 354.56274 * 12 11 10 14 14 C 1.50711 * 120.00088 * 174.56377 * 12 11 10 15 15 C 1.50695 * 115.54735 * 302.92205 * 14 12 11 16 16 C 1.38233 * 120.41390 * 149.04852 * 15 14 12 17 17 N 1.31855 * 120.78521 * 179.97438 * 16 15 14 18 18 C 1.31878 * 121.73592 * 0.02562 * 17 16 15 19 19 C 1.38277 * 120.75340 * 0.02562 * 18 17 16 20 20 Br 1.89092 * 120.43086 * 179.97438 * 19 18 17 21 21 C 1.38616 * 120.41543 * 328.76811 * 15 14 12 22 22 C 1.53000 * 117.49878 * 157.24722 * 14 12 11 23 23 C 1.53001 * 117.49891 * 88.58720 * 14 12 11 24 24 H 0.96999 * 119.99851 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46776 * 60.00518 * 9 7 2 26 26 H 1.08993 * 109.47546 * 300.00754 * 9 7 2 27 27 H 1.08993 * 109.47671 * 300.00354 * 10 9 7 28 28 H 1.09002 * 109.46636 * 60.00675 * 10 9 7 29 29 H 0.96999 * 119.99743 * 0.02562 * 11 10 9 30 30 H 1.07998 * 119.60595 * 359.97438 * 16 15 14 31 31 H 1.08005 * 119.62368 * 180.02562 * 18 17 16 32 32 H 1.07999 * 120.79145 * 0.02562 * 21 15 14 33 33 H 1.08997 * 117.50173 * 0.02562 * 22 14 12 34 34 H 1.08997 * 117.49524 * 145.02399 * 22 14 12 35 35 H 1.08997 * 117.50123 * 214.98287 * 23 14 12 36 36 H 1.09000 * 117.49650 * 0.02562 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 7 1.5128 -4.9308 -0.0012 12 6 2.1867 -6.0979 -0.0016 13 8 3.3954 -6.1004 -0.1020 14 6 1.4384 -7.4002 0.1227 15 6 0.5716 -7.5373 1.3478 16 6 -0.5847 -8.2936 1.3058 17 7 -1.3482 -8.4190 2.3735 18 6 -1.0449 -7.8338 3.5158 19 6 0.0955 -7.0606 3.6332 20 35 0.5212 -6.2251 5.2753 21 6 0.9270 -6.9114 2.5324 22 6 2.1256 -8.6627 -0.4016 23 6 0.9464 -8.0582 -1.1680 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6247 -2.5571 0.8895 27 1 2.8713 -3.6040 -0.8921 28 1 2.8726 -3.6047 0.8878 29 1 0.5428 -4.9308 -0.0005 30 1 -0.8661 -8.7876 0.3876 31 1 -1.6947 -7.9598 4.3692 32 1 1.8269 -6.3176 2.5957 33 1 3.1190 -8.5515 -0.8360 34 1 1.9504 -9.5925 0.1394 35 1 -0.0040 -8.5907 -1.1309 36 1 1.1643 -7.5495 -2.1070 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281515451.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:05 Heat of formation + Delta-G solvation = 17.377379 kcal Electronic energy + Delta-G solvation = -20535.363915 eV Core-core repulsion = 17259.248870 eV Total energy + Delta-G solvation = -3276.115045 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.037 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.04384 -39.44586 -36.84186 -34.93159 -33.41008 -32.87754 -31.86037 -29.76003 -29.66332 -25.85965 -24.42758 -24.03478 -22.64344 -22.23779 -20.94415 -19.52425 -17.90335 -17.19188 -16.62633 -16.36924 -15.50950 -15.30354 -14.76347 -14.63254 -14.47375 -14.42424 -13.84046 -13.44806 -12.97501 -12.89117 -12.38973 -12.32900 -11.74388 -11.56332 -11.34804 -11.24700 -11.05943 -10.94105 -10.69532 -10.65322 -10.38109 -10.07306 -9.77591 -9.64225 -9.49921 -9.26092 -9.02535 -8.61896 -8.40904 -6.11619 -4.14983 0.53805 0.82436 1.29307 2.65332 3.20711 3.29409 3.33100 3.34259 3.41117 3.71638 3.99121 4.19201 4.38890 4.47334 4.53631 4.59523 4.63825 4.76942 4.93549 5.17993 5.25420 5.36440 5.48366 5.61001 5.65570 5.80325 5.87986 6.14852 6.25350 6.27156 6.65762 6.80097 7.46772 7.50069 7.56731 7.85092 7.89291 8.23157 8.49286 8.90474 9.50059 10.99864 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.009928 B = 0.003933 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.727808 B = 7117.509198 C = 8999.859237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.523 4.523 8 H 0.059 0.941 9 C 0.014 3.986 10 C 0.121 3.879 11 N -0.713 5.713 12 C 0.543 3.457 13 O -0.541 6.541 14 C -0.125 4.125 15 C -0.084 4.084 16 C 0.115 3.885 17 N -0.469 5.469 18 C 0.127 3.873 19 C -0.138 4.138 20 Br -0.028 7.028 21 C -0.032 4.032 22 C -0.131 4.131 23 C -0.151 4.151 24 H 0.263 0.737 25 H 0.022 0.978 26 H 0.022 0.978 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.399 0.601 30 H 0.165 0.835 31 H 0.166 0.834 32 H 0.145 0.855 33 H 0.113 0.887 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.733 -19.772 6.533 21.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.562 4.562 8 H 0.077 0.923 9 C -0.024 4.024 10 C -0.001 4.001 11 N -0.362 5.362 12 C 0.327 3.673 13 O -0.418 6.418 14 C -0.129 4.129 15 C -0.088 4.088 16 C -0.042 4.042 17 N -0.177 5.177 18 C -0.032 4.032 19 C -0.220 4.220 20 Br 0.057 6.943 21 C -0.059 4.059 22 C -0.168 4.168 23 C -0.188 4.188 24 H 0.073 0.927 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.232 0.768 30 H 0.182 0.818 31 H 0.183 0.817 32 H 0.163 0.837 33 H 0.131 0.869 34 H 0.122 0.878 35 H 0.127 0.873 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.621 -19.801 7.049 21.182 hybrid contribution 0.592 1.450 -0.211 1.581 sum -2.029 -18.351 6.838 19.689 Atomic orbital electron populations 1.69942 1.06096 1.27031 1.50121 1.24984 0.94873 0.99381 0.94906 0.86580 0.79542 0.82677 0.78795 1.20095 1.21204 1.20088 1.20985 0.93166 0.90337 1.51698 0.92314 1.19309 0.94139 0.91044 0.97876 1.21787 0.96103 0.81319 1.00886 1.46293 1.10654 1.06275 1.72949 1.19183 0.87201 0.83932 0.77008 1.90693 1.13828 1.87262 1.50057 1.20135 1.03386 0.94998 0.94420 1.19823 0.96209 0.99238 0.93484 1.22828 0.89550 0.94727 0.97122 1.67887 1.30590 1.20132 0.99112 1.22859 0.93030 0.91180 0.96148 1.22965 1.00310 1.04182 0.94524 1.96799 1.93923 1.79222 1.24370 1.21486 0.98458 0.95607 0.90394 1.23108 0.98457 0.93890 1.01322 1.23215 0.99453 1.02182 0.93963 0.92750 0.95948 0.95948 0.92317 0.92506 0.76769 0.81790 0.81686 0.83713 0.86870 0.87763 0.87330 0.87307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.98 13.29 55.43 0.74 -25.25 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.36 9.11 -34.44 -0.31 -14.67 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 9 C 0.01 0.34 5.09 -27.88 -0.14 0.19 16 10 C 0.12 2.51 5.62 -4.04 -0.02 2.49 16 11 N -0.71 -12.10 5.53 -60.29 -0.33 -12.43 16 12 C 0.54 8.75 6.09 -10.98 -0.07 8.68 16 13 O -0.54 -10.61 16.51 5.56 0.09 -10.52 16 14 C -0.13 -1.48 2.38 -156.81 -0.37 -1.85 16 15 C -0.08 -0.96 5.46 -104.49 -0.57 -1.53 16 16 C 0.11 1.17 10.54 -17.54 -0.18 0.98 16 17 N -0.47 -5.29 10.36 -13.23 -0.14 -5.43 16 18 C 0.13 1.36 10.95 -17.52 -0.19 1.17 16 19 C -0.14 -1.62 6.25 -39.37 -0.25 -1.87 16 20 Br -0.03 -0.32 33.74 -68.01 -2.29 -2.61 16 21 C -0.03 -0.40 9.21 -39.25 -0.36 -0.77 16 22 C -0.13 -1.26 9.73 -26.69 -0.26 -1.52 16 23 C -0.15 -1.33 9.59 -26.69 -0.26 -1.58 16 24 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.40 6.18 8.48 -40.82 -0.35 5.84 16 30 H 0.17 1.21 5.96 -52.49 -0.31 0.90 16 31 H 0.17 1.39 8.06 -52.48 -0.42 0.97 16 32 H 0.15 2.01 7.47 -52.49 -0.39 1.62 16 33 H 0.11 1.22 7.85 -51.93 -0.41 0.81 16 34 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.11 0.68 6.12 -51.93 -0.32 0.36 16 36 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 334.58 15.07 5.04 5.04 Total: -1.00 -31.27 334.58 -9.28 -40.55 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -4.28 Total: 3.09 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -3.09 Total: -8.69 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: 0.27 Total: -43.11 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.09 Total: -10.52 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 35 Polarization: -0.32 SS G_CDS: -2.29 Total: -2.61 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.27 -9.28 -40.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281515451.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.928 kcal (2) G-P(sol) polarization free energy of solvation -31.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds